Wall clock time and date at job start Tue Mar 31 2020 14:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 C 1.47197 * 109.46513 * 239.99773 * 2 1 3 5 5 N 2.60805 * 109.46746 * 239.99944 * 2 1 3 6 6 C 1.50692 * 109.46801 * 120.00035 * 2 1 3 7 7 C 1.38313 * 119.96753 * 359.97438 * 6 2 1 8 8 C 1.38274 * 120.15725 * 179.97438 * 7 6 2 9 9 C 1.38114 * 120.07823 * 0.05161 * 8 7 6 10 10 C 1.38919 * 119.91973 * 359.96824 * 9 8 7 11 11 N 1.39684 * 120.07783 * 179.97438 * 10 9 8 12 12 C 1.39798 * 119.99534 * 328.85609 * 11 10 9 13 13 C 1.38971 * 120.01050 * 333.87175 * 12 11 10 14 14 C 1.37996 * 119.99484 * 179.72080 * 13 12 11 15 15 C 1.38912 * 120.00453 * 0.55685 * 14 13 12 16 16 O 1.35787 * 119.99095 * 179.70184 * 15 14 13 17 17 C 1.34814 * 116.99615 * 186.85181 * 16 15 14 18 18 H 1.08001 * 120.00011 * 354.59617 * 17 16 15 19 19 C 1.38611 * 119.99873 * 174.60273 * 17 16 15 20 20 N 1.31589 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00113 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47398 * 119.99692 * 21 19 17 24 24 H 1.48503 * 109.46954 * 239.99408 * 21 19 17 25 25 C 1.38910 * 120.01205 * 359.71659 * 15 14 13 26 26 C 1.37989 * 120.01302 * 0.02562 * 25 15 14 27 27 C 1.38075 * 119.96015 * 180.25101 * 6 2 1 28 28 H 1.09003 * 109.46777 * 300.00491 * 1 2 3 29 29 H 1.09003 * 109.47412 * 59.99546 * 1 2 3 30 30 H 1.08997 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46840 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47170 * 299.99986 * 3 2 1 33 33 H 1.09003 * 109.47639 * 60.00037 * 3 2 1 34 34 H 1.08009 * 119.92239 * 359.97438 * 7 6 2 35 35 H 1.08003 * 119.96067 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.03829 * 179.97438 * 9 8 7 37 37 H 0.96991 * 120.00128 * 149.13100 * 11 10 9 38 38 H 1.08004 * 119.99960 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.99522 * 180.29505 * 14 13 12 40 40 H 0.96994 * 120.00002 * 180.02562 * 20 19 17 41 41 H 1.08001 * 119.99310 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.00862 * 179.97438 * 26 25 15 43 43 H 1.07999 * 120.03705 * 0.02562 * 27 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6940 -1.2019 5 7 2.3992 -1.2295 -2.1295 6 6 2.0323 -0.7104 1.2304 7 6 1.1328 -1.2353 2.1406 8 6 1.5893 -1.8884 3.2707 9 6 2.9460 -2.0178 3.4948 10 6 3.8523 -1.4914 2.5830 11 7 5.2251 -1.6199 2.8066 12 6 5.7204 -1.6507 4.1136 13 6 5.0120 -1.0375 5.1400 14 6 5.4984 -1.0731 6.4309 15 6 6.7017 -1.7118 6.7025 16 8 7.1829 -1.7414 7.9719 17 6 8.4191 -2.2503 8.1460 18 1 8.9442 -2.6908 7.3113 19 6 9.0161 -2.2085 9.3962 20 7 8.3764 -1.6716 10.4131 21 14 10.7286 -2.9144 9.6377 22 1 11.2270 -3.4562 8.3480 23 1 11.6428 -1.8445 10.1119 24 1 10.6773 -4.0041 10.6452 25 6 7.4127 -2.3199 5.6758 26 6 6.9244 -2.2893 4.3856 27 6 3.3899 -0.8316 1.4508 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 0.0713 -1.1348 1.9683 35 1 0.8842 -2.2974 3.9792 36 1 3.3019 -2.5276 4.3779 37 1 5.8350 -1.6838 2.0552 38 1 4.0789 -0.5367 4.9279 39 1 4.9455 -0.6006 7.2294 40 1 8.7943 -1.6420 11.2880 41 1 8.3485 -2.8161 5.8873 42 1 7.4775 -2.7618 3.5873 43 1 4.0917 -0.4172 0.7421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212609538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:09 Heat of formation + Delta-G solvation = 54.099405 kcal Electronic energy + Delta-G solvation = -25127.235230 eV Core-core repulsion = 21524.088393 eV Total energy + Delta-G solvation = -3603.146837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38065 -39.17631 -37.92250 -36.70166 -35.22325 -34.04475 -32.22151 -30.65239 -30.47133 -29.26398 -27.97369 -27.01575 -25.24715 -24.24334 -22.86619 -21.89604 -21.66262 -20.56391 -18.24442 -17.82899 -17.10487 -16.88200 -16.57950 -15.70179 -15.06198 -14.96718 -14.55533 -14.43254 -14.17570 -13.89259 -13.88193 -13.69227 -13.54551 -13.23239 -12.95933 -12.80360 -12.56408 -12.54628 -12.39417 -12.13783 -12.07661 -11.83100 -11.77854 -11.61563 -11.54604 -11.13462 -11.10199 -10.95952 -10.70651 -10.44867 -10.07748 -9.36992 -8.91293 -8.86210 -8.31021 -8.09548 -6.60850 -6.45287 -4.02918 1.22178 1.37041 2.07961 2.36026 2.49441 2.52811 3.11116 3.12973 3.18243 3.45952 3.55956 3.86487 3.95907 4.27077 4.44973 4.52036 4.55675 4.91542 5.07026 5.10538 5.16374 5.23015 5.27585 5.31238 5.33380 5.42138 5.50137 5.52754 5.58898 5.63680 5.70902 5.78447 5.88789 6.10330 6.13699 6.27707 6.38760 6.45103 6.51859 6.72820 6.74149 6.91485 6.99445 7.20231 7.28004 7.31698 7.49590 7.81726 7.96032 7.99004 9.00343 9.70730 10.72751 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.002210 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.133304 B =12668.178438 C =13075.154942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 C -0.139 4.139 4 C 0.220 3.780 5 N -0.434 5.434 6 C -0.053 4.053 7 C -0.156 4.156 8 C -0.083 4.083 9 C -0.161 4.161 10 C 0.205 3.795 11 N -0.684 5.684 12 C 0.074 3.926 13 C -0.111 4.111 14 C -0.163 4.163 15 C 0.133 3.867 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.205 4.205 26 C -0.110 4.110 27 C -0.168 4.168 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.402 0.598 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.269 0.731 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 4.029 -16.926 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.076 3.924 3 C -0.197 4.197 4 C -0.099 4.099 5 N -0.108 5.108 6 C -0.055 4.055 7 C -0.176 4.176 8 C -0.102 4.102 9 C -0.183 4.183 10 C 0.104 3.896 11 N -0.307 5.307 12 C -0.020 4.020 13 C -0.132 4.132 14 C -0.183 4.183 15 C 0.080 3.920 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.225 4.225 26 C -0.131 4.131 27 C -0.191 4.191 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.237 0.763 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.127 0.873 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.667 3.321 -17.742 22.641 hybrid contribution 1.186 -0.286 0.142 1.228 sum -12.481 3.035 -17.600 21.789 Atomic orbital electron populations 1.21987 0.90985 1.03514 1.03663 1.17095 0.96704 0.94209 0.84384 1.21928 1.02280 0.91917 1.03584 1.29008 0.93364 0.93508 0.93999 1.81212 1.08697 1.09082 1.11807 1.19047 0.92999 0.99066 0.94399 1.20910 0.99344 1.02028 0.95298 1.20951 0.94927 0.97516 0.96763 1.21171 0.92856 1.02510 1.01729 1.17683 0.84095 0.93509 0.94295 1.41893 1.03542 1.79511 1.05716 1.17274 0.96686 1.04079 0.83969 1.20476 1.00356 1.00563 0.91780 1.20073 0.96846 1.05133 0.96214 1.19343 0.93063 0.93946 0.85666 1.83986 1.31918 1.71908 1.20543 1.21330 0.90297 1.38306 0.96683 0.89147 1.25269 0.99742 0.97087 0.94498 1.70056 1.37522 1.41542 1.00723 0.85662 0.80414 0.78587 0.78849 1.19166 1.20165 1.20174 1.21002 1.02879 1.06490 0.92153 1.20412 0.96081 1.00120 0.96458 1.20561 0.95043 1.03435 1.00029 0.89775 0.91453 0.91207 0.91420 0.91464 0.89949 0.85535 0.85765 0.85136 0.76330 0.86417 0.86121 0.92109 0.85209 0.87296 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 7.09 37.16 0.26 -0.43 16 2 C 0.08 0.57 0.78 -158.45 -0.12 0.45 16 3 C -0.14 -0.80 8.24 37.15 0.31 -0.49 16 4 C 0.22 2.21 13.47 -20.76 -0.28 1.93 16 5 N -0.43 -5.55 18.54 42.16 0.78 -4.77 16 6 C -0.05 -0.48 4.73 -104.66 -0.50 -0.98 16 7 C -0.16 -1.35 8.97 -39.54 -0.35 -1.71 16 8 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 9 C -0.16 -2.01 7.75 -39.37 -0.31 -2.31 16 10 C 0.20 2.58 5.93 -83.76 -0.50 2.08 16 11 N -0.68 -9.20 5.47 -8.37 -0.05 -9.25 16 12 C 0.07 1.22 6.04 -83.68 -0.51 0.72 16 13 C -0.11 -1.91 7.85 -39.40 -0.31 -2.22 16 14 C -0.16 -3.29 9.98 -39.42 -0.39 -3.69 16 15 C 0.13 3.11 6.64 -39.08 -0.26 2.85 16 16 O -0.18 -5.01 9.76 -0.02 0.00 -5.01 16 17 C -0.39 -10.69 9.48 30.87 0.29 -10.39 16 18 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 19 C 0.04 1.03 5.49 -17.52 -0.10 0.94 16 20 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 21 Si 0.94 20.29 29.55 -169.99 -5.02 15.26 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.21 -4.28 9.16 -39.42 -0.36 -4.64 16 26 C -0.11 -1.92 9.94 -39.40 -0.39 -2.31 16 27 C -0.17 -1.82 8.72 -39.37 -0.34 -2.16 16 28 H 0.08 0.29 7.51 -51.93 -0.39 -0.10 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.35 7.51 -51.93 -0.39 -0.04 16 31 H 0.07 0.44 7.37 -51.93 -0.38 0.05 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.13 0.77 5.88 -52.48 -0.31 0.46 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.13 1.81 6.55 -52.49 -0.34 1.46 16 37 H 0.40 4.66 8.89 -40.82 -0.36 4.30 16 38 H 0.12 1.82 6.34 -52.48 -0.33 1.48 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.13 2.72 5.65 -52.49 -0.30 2.43 16 42 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.12 1.18 7.55 -52.49 -0.40 0.79 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -31.67 364.00 -7.44 -39.12 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.15 Total: 7.04 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -4.25 Total: -23.61 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 1.49 Total: -38.29 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.01 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.67 -7.44 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.215 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds