Wall clock time and date at job start Tue Mar 31 2020 14:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 C 1.47201 * 109.47245 * 239.99796 * 2 1 3 5 5 N 2.60794 * 109.47049 * 239.99735 * 2 1 3 6 6 C 1.50706 * 109.46826 * 119.99848 * 2 1 3 7 7 C 1.38297 * 119.91818 * 179.97438 * 6 2 1 8 8 C 1.38098 * 120.07341 * 180.02562 * 7 6 2 9 9 C 1.38936 * 119.92077 * 359.97438 * 8 7 6 10 10 N 1.39681 * 120.07422 * 179.97438 * 9 8 7 11 11 C 1.39790 * 120.00124 * 150.95311 * 10 9 8 12 12 C 1.38974 * 120.00685 * 146.39399 * 11 10 9 13 13 C 1.37996 * 119.99010 * 180.29949 * 12 11 10 14 14 C 1.38915 * 120.00538 * 359.44592 * 13 12 11 15 15 O 1.35794 * 119.99182 * 180.27419 * 14 13 12 16 16 C 1.34811 * 116.99822 * 354.12690 * 15 14 13 17 17 H 1.08004 * 120.00544 * 356.02609 * 16 15 14 18 18 C 1.38620 * 120.00025 * 176.03051 * 16 15 14 19 19 N 1.31586 * 119.99491 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00190 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47311 * 59.99588 * 20 18 16 22 22 H 1.48504 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47088 * 300.00056 * 20 18 16 24 24 C 1.38912 * 120.01638 * 0.26080 * 14 13 12 25 25 C 1.37996 * 120.00529 * 0.02562 * 24 14 13 26 26 C 1.38938 * 119.85067 * 0.25831 * 9 8 7 27 27 C 1.38096 * 119.91703 * 359.51039 * 26 9 8 28 28 H 1.09000 * 109.46749 * 300.00499 * 1 2 3 29 29 H 1.08999 * 109.46558 * 59.99861 * 1 2 3 30 30 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46803 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47048 * 299.99349 * 3 2 1 33 33 H 1.08993 * 109.47371 * 60.00065 * 3 2 1 34 34 H 1.07999 * 119.96419 * 0.02707 * 7 6 2 35 35 H 1.08001 * 120.03988 * 179.97438 * 8 7 6 36 36 H 0.97008 * 120.00110 * 330.95016 * 10 9 8 37 37 H 1.08003 * 120.01124 * 0.02562 * 12 11 10 38 38 H 1.07998 * 120.00006 * 179.72763 * 13 12 11 39 39 H 0.96998 * 119.99617 * 179.97438 * 19 18 16 40 40 H 1.07993 * 119.99299 * 180.02562 * 24 14 13 41 41 H 1.08000 * 120.00294 * 179.97438 * 25 24 14 42 42 H 1.07996 * 120.04109 * 179.74078 * 26 9 8 43 43 H 1.08000 * 119.95906 * 180.21198 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1293 6 6 2.0323 -0.7104 1.2305 7 6 3.3923 -0.8363 1.4475 8 6 3.8561 -1.4871 2.5738 9 6 2.9546 -2.0152 3.4896 10 7 3.4202 -2.6746 4.6296 11 6 2.6560 -2.6712 5.8001 12 6 2.6727 -3.7751 6.6442 13 6 1.9133 -3.7738 7.7965 14 6 1.1414 -2.6647 8.1185 15 8 0.3986 -2.6616 9.2553 16 6 0.3586 -3.8081 9.9633 17 1 0.8493 -4.6932 9.5862 18 6 -0.3126 -3.8511 11.1755 19 7 -0.9101 -2.7726 11.6352 20 14 -0.3687 -5.4398 12.1562 21 1 1.0142 -5.8606 12.4966 22 1 -1.1425 -5.2236 13.4051 23 1 -1.0229 -6.4987 11.3462 24 6 1.1293 -1.5587 7.2781 25 6 1.8838 -1.5617 6.1227 26 6 1.5890 -1.8911 3.2660 27 6 1.1323 -1.2349 2.1400 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.0925 -0.4252 0.7354 35 1 4.9183 -1.5855 2.7425 36 1 4.2738 -3.1349 4.6090 37 1 3.2763 -4.6356 6.3962 38 1 1.9228 -4.6333 8.4503 39 1 -1.3800 -2.8027 12.4832 40 1 0.5293 -0.6966 7.5290 41 1 1.8740 -0.7020 5.4691 42 1 0.8855 -2.3041 3.9737 43 1 0.0709 -1.1351 1.9673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212609684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:13 Heat of formation + Delta-G solvation = 52.530444 kcal Electronic energy + Delta-G solvation = -25064.002696 eV Core-core repulsion = 21460.787824 eV Total energy + Delta-G solvation = -3603.214872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30837 -39.18640 -37.95377 -36.67223 -35.25741 -33.73505 -32.21283 -31.19815 -30.36165 -29.11760 -27.80126 -27.09142 -25.28715 -24.04554 -22.70014 -22.15549 -21.43189 -20.71825 -18.16600 -17.79929 -17.45903 -16.99415 -16.48399 -15.58647 -15.08005 -14.63490 -14.58214 -14.33628 -14.08958 -13.91280 -13.80277 -13.68067 -13.49066 -13.25741 -12.95754 -12.86327 -12.78501 -12.50655 -12.43134 -12.26849 -11.96368 -11.82386 -11.71434 -11.58410 -11.48293 -11.09073 -11.04403 -10.86594 -10.75824 -10.49003 -10.06166 -9.41769 -8.96915 -8.87067 -8.32489 -8.02892 -6.65921 -6.47545 -4.05019 1.26931 1.39308 2.07316 2.30979 2.54512 2.58170 3.11371 3.11635 3.14935 3.52436 3.57665 3.90289 3.94353 4.38509 4.49342 4.50163 4.63073 4.92594 4.94317 5.07095 5.22549 5.23070 5.31980 5.37606 5.39286 5.47078 5.50640 5.56412 5.60556 5.68437 5.72519 5.83247 5.96325 6.09451 6.12817 6.27046 6.35422 6.47253 6.52012 6.72413 6.74675 6.91138 6.99750 7.17529 7.30051 7.33553 7.48358 7.80280 7.95588 7.96874 8.97858 9.67640 10.70321 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.002217 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.310637 B =12624.069493 C =13041.298720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 C -0.138 4.138 4 C 0.221 3.779 5 N -0.439 5.439 6 C -0.140 4.140 7 C -0.069 4.069 8 C -0.182 4.182 9 C 0.212 3.788 10 N -0.683 5.683 11 C 0.065 3.935 12 C -0.103 4.103 13 C -0.209 4.209 14 C 0.137 3.863 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.167 4.167 25 C -0.101 4.101 26 C -0.168 4.168 27 C -0.069 4.069 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.402 0.598 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.271 0.729 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.131 0.869 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 5.553 -18.223 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.082 3.918 3 C -0.196 4.196 4 C -0.097 4.097 5 N -0.114 5.114 6 C -0.143 4.143 7 C -0.088 4.088 8 C -0.204 4.204 9 C 0.111 3.889 10 N -0.306 5.306 11 C -0.029 4.029 12 C -0.124 4.124 13 C -0.229 4.229 14 C 0.083 3.917 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.187 4.187 25 C -0.122 4.122 26 C -0.189 4.189 27 C -0.088 4.088 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.237 0.763 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.556 4.999 -19.213 20.616 hybrid contribution 0.370 -0.948 0.899 1.358 sum 5.926 4.051 -18.314 19.671 Atomic orbital electron populations 1.21996 0.91199 1.03500 1.03644 1.16995 0.96519 0.93917 0.84365 1.21926 1.01988 0.92257 1.03473 1.29141 0.93235 0.93388 0.93952 1.81192 1.08979 1.09297 1.11909 1.19109 0.93621 1.05312 0.96264 1.20636 0.94520 0.97267 0.96377 1.20701 0.98936 1.03678 0.97087 1.17870 0.92715 0.91743 0.86607 1.41904 1.22738 1.58023 1.07953 1.17228 1.01365 0.95314 0.88975 1.20501 1.00529 0.95750 0.95605 1.21013 1.01976 1.00578 0.99372 1.19365 0.90746 0.93415 0.88167 1.83994 1.58484 1.36272 1.29334 1.21240 1.35890 0.87378 1.02235 0.89210 1.25271 0.96050 0.99019 0.96196 1.70037 1.31693 1.27855 1.20129 0.85794 0.78781 0.80097 0.78848 1.19539 1.20276 1.19513 1.20064 1.04881 0.98637 0.95117 1.20477 0.98804 0.96159 0.96748 1.21040 0.94317 1.04203 0.99381 1.20920 0.99516 0.95480 0.92872 0.89776 0.91532 0.91257 0.91646 0.91655 0.90024 0.86535 0.86139 0.76320 0.87280 0.85209 0.91959 0.86122 0.86619 0.85108 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 7.08 37.16 0.26 -0.57 16 2 C 0.09 0.63 0.79 -158.44 -0.12 0.51 16 3 C -0.14 -0.78 8.24 37.16 0.31 -0.47 16 4 C 0.22 2.24 13.46 -20.76 -0.28 1.96 16 5 N -0.44 -5.63 18.54 42.15 0.78 -4.85 16 6 C -0.14 -1.29 4.74 -104.58 -0.50 -1.79 16 7 C -0.07 -0.67 8.79 -39.61 -0.35 -1.02 16 8 C -0.18 -1.93 9.95 -39.37 -0.39 -2.33 16 9 C 0.21 2.61 5.92 -83.76 -0.50 2.11 16 10 N -0.68 -8.87 5.45 -8.37 -0.05 -8.92 16 11 C 0.07 1.05 5.81 -83.68 -0.49 0.56 16 12 C -0.10 -1.76 9.96 -39.40 -0.39 -2.16 16 13 C -0.21 -4.29 9.13 -39.42 -0.36 -4.65 16 14 C 0.14 3.14 6.65 -39.08 -0.26 2.88 16 15 O -0.18 -4.88 9.76 -0.03 0.00 -4.88 16 16 C -0.39 -10.59 9.45 30.87 0.29 -10.30 16 17 H 0.09 2.23 5.27 -52.48 -0.28 1.96 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -24.75 13.67 55.48 0.76 -24.00 16 20 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.17 -3.32 9.98 -39.42 -0.39 -3.71 16 25 C -0.10 -1.71 7.99 -39.40 -0.31 -2.02 16 26 C -0.17 -2.05 8.08 -39.37 -0.32 -2.37 16 27 C -0.07 -0.69 8.97 -39.62 -0.36 -1.04 16 28 H 0.08 0.38 7.51 -51.93 -0.39 -0.01 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 7.51 -51.93 -0.39 0.03 16 31 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.12 0.97 7.56 -52.49 -0.40 0.57 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.40 4.39 8.91 -40.82 -0.36 4.02 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.13 2.67 5.69 -52.49 -0.30 2.37 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.12 1.75 6.89 -52.49 -0.36 1.39 16 42 H 0.13 1.78 6.71 -52.49 -0.35 1.43 16 43 H 0.13 1.01 5.88 -52.49 -0.31 0.70 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -31.12 365.00 -7.47 -38.59 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.19 Total: 6.99 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -4.25 Total: -23.44 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 1.49 Total: -37.76 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.12 -7.47 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.122 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds