Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 C 1.47201 * 109.47245 * 239.99796 * 2 1 3 5 5 N 2.60794 * 109.47049 * 239.99735 * 2 1 3 6 6 C 1.50706 * 109.46826 * 119.99848 * 2 1 3 7 7 C 1.38297 * 119.91818 * 179.97438 * 6 2 1 8 8 C 1.38098 * 120.07341 * 180.02562 * 7 6 2 9 9 C 1.38936 * 119.92077 * 359.97438 * 8 7 6 10 10 N 1.39681 * 120.07422 * 179.97438 * 9 8 7 11 11 C 1.39790 * 120.00124 * 150.95311 * 10 9 8 12 12 C 1.38974 * 120.00685 * 146.39399 * 11 10 9 13 13 C 1.37996 * 119.99010 * 180.29949 * 12 11 10 14 14 C 1.38915 * 120.00538 * 359.44592 * 13 12 11 15 15 O 1.35794 * 119.99182 * 180.27419 * 14 13 12 16 16 C 1.34811 * 116.99822 * 354.12690 * 15 14 13 17 17 H 1.08004 * 120.00544 * 356.02609 * 16 15 14 18 18 C 1.38620 * 120.00025 * 176.03051 * 16 15 14 19 19 N 1.31586 * 119.99491 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00190 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47311 * 59.99588 * 20 18 16 22 22 H 1.48504 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47088 * 300.00056 * 20 18 16 24 24 C 1.38912 * 120.01638 * 0.26080 * 14 13 12 25 25 C 1.37996 * 120.00529 * 0.02562 * 24 14 13 26 26 C 1.38938 * 119.85067 * 0.25831 * 9 8 7 27 27 C 1.38096 * 119.91703 * 359.51039 * 26 9 8 28 28 H 1.09000 * 109.46749 * 300.00499 * 1 2 3 29 29 H 1.08999 * 109.46558 * 59.99861 * 1 2 3 30 30 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46803 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47048 * 299.99349 * 3 2 1 33 33 H 1.08993 * 109.47371 * 60.00065 * 3 2 1 34 34 H 1.07999 * 119.96419 * 0.02707 * 7 6 2 35 35 H 1.08001 * 120.03988 * 179.97438 * 8 7 6 36 36 H 0.97008 * 120.00110 * 330.95016 * 10 9 8 37 37 H 1.08003 * 120.01124 * 0.02562 * 12 11 10 38 38 H 1.07998 * 120.00006 * 179.72763 * 13 12 11 39 39 H 0.96998 * 119.99617 * 179.97438 * 19 18 16 40 40 H 1.07993 * 119.99299 * 180.02562 * 24 14 13 41 41 H 1.08000 * 120.00294 * 179.97438 * 25 24 14 42 42 H 1.07996 * 120.04109 * 179.74078 * 26 9 8 43 43 H 1.08000 * 119.95906 * 180.21198 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1293 6 6 2.0323 -0.7104 1.2305 7 6 3.3923 -0.8363 1.4475 8 6 3.8561 -1.4871 2.5738 9 6 2.9546 -2.0152 3.4896 10 7 3.4202 -2.6746 4.6296 11 6 2.6560 -2.6712 5.8001 12 6 2.6727 -3.7751 6.6442 13 6 1.9133 -3.7738 7.7965 14 6 1.1414 -2.6647 8.1185 15 8 0.3986 -2.6616 9.2553 16 6 0.3586 -3.8081 9.9633 17 1 0.8493 -4.6932 9.5862 18 6 -0.3126 -3.8511 11.1755 19 7 -0.9101 -2.7726 11.6352 20 14 -0.3687 -5.4398 12.1562 21 1 1.0142 -5.8606 12.4966 22 1 -1.1425 -5.2236 13.4051 23 1 -1.0229 -6.4987 11.3462 24 6 1.1293 -1.5587 7.2781 25 6 1.8838 -1.5617 6.1227 26 6 1.5890 -1.8911 3.2660 27 6 1.1323 -1.2349 2.1400 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.0925 -0.4252 0.7354 35 1 4.9183 -1.5855 2.7425 36 1 4.2738 -3.1349 4.6090 37 1 3.2763 -4.6356 6.3962 38 1 1.9228 -4.6333 8.4503 39 1 -1.3800 -2.8027 12.4832 40 1 0.5293 -0.6966 7.5290 41 1 1.8740 -0.7020 5.4691 42 1 0.8855 -2.3041 3.9737 43 1 0.0709 -1.1351 1.9673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212609684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = 35.876303 kcal Electronic energy + Delta-G solvation = -25064.724874 eV Core-core repulsion = 21460.787824 eV Total energy + Delta-G solvation = -3603.937050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29010 -40.57016 -39.15979 -37.88150 -36.28930 -34.80846 -34.05743 -32.11852 -31.76478 -30.25315 -28.49347 -28.18020 -27.08283 -24.81588 -23.82200 -23.46489 -22.48376 -21.95014 -19.84663 -18.96068 -18.63214 -18.06592 -17.87733 -16.44141 -16.21856 -16.16746 -15.77647 -15.48499 -15.36861 -15.20379 -14.90985 -14.61309 -14.46744 -14.35556 -14.23071 -14.05156 -13.82216 -13.53155 -13.41478 -13.18853 -13.00552 -12.98550 -12.71540 -12.62083 -12.51797 -12.39983 -12.30855 -12.13616 -11.79320 -11.58594 -11.31244 -11.13186 -10.65474 -9.85738 -9.76967 -9.30406 -8.42322 -7.99303 -6.07527 0.31007 0.51635 0.58594 0.89640 1.37713 1.47902 1.53257 1.75920 1.78073 2.20833 2.47301 2.71766 2.87695 3.13098 3.22110 3.57603 3.72016 3.89031 4.07654 4.09515 4.13710 4.15917 4.20485 4.52689 4.54723 4.56237 4.69133 4.77848 4.86868 4.92061 4.95419 4.98429 5.01750 5.10120 5.17035 5.22816 5.30995 5.38083 5.40909 5.45576 5.53087 5.60183 5.71066 5.71537 5.89127 6.06466 6.07344 6.55444 6.59815 6.87911 7.02836 7.85070 8.80830 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.002217 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.310637 B =12624.069493 C =13041.298720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 C -0.138 4.138 4 C 0.242 3.758 5 N -0.489 5.489 6 C -0.130 4.130 7 C -0.074 4.074 8 C -0.176 4.176 9 C 0.189 3.811 10 N -0.680 5.680 11 C 0.103 3.897 12 C -0.106 4.106 13 C -0.212 4.212 14 C 0.093 3.907 15 O -0.233 6.233 16 C -0.409 4.409 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.170 4.170 25 C -0.096 4.096 26 C -0.183 4.183 27 C -0.069 4.069 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.414 0.586 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.113 0.887 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 5.600 -20.923 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.085 3.915 3 C -0.197 4.197 4 C -0.075 4.075 5 N -0.164 5.164 6 C -0.132 4.132 7 C -0.093 4.093 8 C -0.198 4.198 9 C 0.090 3.910 10 N -0.305 5.305 11 C 0.007 3.993 12 C -0.127 4.127 13 C -0.232 4.232 14 C 0.042 3.958 15 O -0.140 6.140 16 C -0.485 4.485 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.835 3.165 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.190 4.190 25 C -0.117 4.117 26 C -0.205 4.205 27 C -0.087 4.087 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.252 0.748 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.131 0.869 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.026 5.055 -22.016 23.656 hybrid contribution 0.108 -0.806 1.232 1.476 sum 7.134 4.249 -20.784 22.381 Atomic orbital electron populations 1.22074 0.89666 1.03751 1.05142 1.17207 0.97671 0.94432 0.82204 1.21975 1.02089 0.90826 1.04766 1.29627 0.91875 0.92250 0.93775 1.81223 1.10729 1.10924 1.13569 1.19331 0.93483 1.04040 0.96381 1.20918 0.95137 0.96851 0.96357 1.20896 0.99598 1.02689 0.96574 1.18001 0.93084 0.92964 0.86941 1.41807 1.22951 1.58574 1.07161 1.17322 0.98960 0.93988 0.89062 1.20755 1.00246 0.97196 0.94495 1.21086 1.02092 0.99572 1.00407 1.19853 0.92281 0.95540 0.88093 1.83951 1.61520 1.36927 1.31579 1.21723 1.36067 0.88055 1.02686 0.88186 1.26523 0.95546 1.02922 0.97174 1.70188 1.34154 1.30618 1.21036 0.84685 0.79346 0.75393 0.77052 1.18217 1.19848 1.18293 1.20245 1.05193 0.97862 0.95664 1.20640 0.98092 0.97236 0.95741 1.21050 0.94147 1.05173 1.00088 1.21139 1.00841 0.94618 0.92092 0.88175 0.90290 0.91671 0.91619 0.90404 0.88800 0.84926 0.84520 0.74799 0.84039 0.85943 0.91979 0.86355 0.84359 0.86911 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.08 71.98 0.51 -0.67 16 2 C 0.09 1.01 0.79 -54.73 -0.04 0.97 16 3 C -0.14 -1.04 8.24 71.98 0.59 -0.44 16 4 C 0.24 4.30 13.46 89.44 1.20 5.51 16 5 N -0.49 -11.75 18.54 20.01 0.37 -11.38 16 6 C -0.13 -1.95 4.74 -19.84 -0.09 -2.04 16 7 C -0.07 -1.17 8.79 22.25 0.20 -0.98 16 8 C -0.18 -3.13 9.95 22.40 0.22 -2.90 16 9 C 0.19 4.10 5.92 38.23 0.23 4.33 16 10 N -0.68 -15.58 5.45 -180.39 -0.98 -16.57 16 11 C 0.10 3.07 5.81 38.22 0.22 3.29 16 12 C -0.11 -3.46 9.96 22.39 0.22 -3.23 16 13 C -0.21 -8.80 9.13 22.37 0.20 -8.59 16 14 C 0.09 4.44 6.65 22.59 0.15 4.59 16 15 O -0.23 -13.68 9.76 -23.03 -0.22 -13.90 16 16 C -0.41 -23.33 9.45 67.91 0.64 -22.69 16 17 H 0.10 5.20 5.27 -2.91 -0.02 5.19 16 18 C -0.02 -1.37 5.49 84.82 0.47 -0.90 16 19 N -0.92 -55.97 13.67 21.61 0.30 -55.68 16 20 Si 1.02 42.27 29.55 68.60 2.03 44.30 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C -0.17 -6.90 9.98 22.37 0.22 -6.67 16 25 C -0.10 -3.13 7.99 22.39 0.18 -2.95 16 26 C -0.18 -4.04 8.08 22.40 0.18 -3.86 16 27 C -0.07 -1.15 8.97 22.25 0.20 -0.95 16 28 H 0.10 0.52 7.51 -2.39 -0.02 0.50 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.60 7.51 -2.39 -0.02 0.58 16 31 H 0.06 0.51 7.38 -2.39 -0.02 0.49 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 1.70 7.56 -2.91 -0.02 1.68 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.41 7.59 8.91 -92.70 -0.83 6.76 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.12 5.18 5.69 -2.91 -0.02 5.16 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 41 H 0.14 3.87 6.89 -2.91 -0.02 3.85 16 42 H 0.11 2.91 6.71 -2.91 -0.02 2.89 16 43 H 0.15 1.87 5.88 -2.91 -0.02 1.85 16 Total: -1.00 -72.73 365.00 7.22 -65.51 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.23 Total: 25.94 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 5.50 Total: -38.22 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -0.32 Total: -83.63 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.22 Total: -13.90 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.73 7.22 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.387 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds