Wall clock time and date at job start Tue Mar 31 2020 14:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 245.98446 * 3 2 1 5 5 N 1.46895 * 109.47308 * 309.45229 * 4 3 2 6 6 C 1.49321 * 111.00386 * 75.46706 * 5 4 3 7 7 C 1.55035 * 102.76729 * 161.50356 * 6 5 4 8 8 C 1.55044 * 103.30469 * 324.40106 * 7 6 5 9 9 H 1.09010 * 109.32420 * 258.11643 * 8 7 6 10 10 C 1.51197 * 107.28294 * 139.27929 * 8 7 6 11 11 C 1.52078 * 114.39354 * 205.43213 * 10 8 7 12 12 N 1.45509 * 110.65068 * 47.77599 * 11 10 8 13 13 C 1.34780 * 119.37978 * 131.23767 * 12 11 10 14 14 O 1.21280 * 120.00423 * 179.72912 * 13 12 11 15 15 C 1.50701 * 119.99795 * 359.73589 * 13 12 11 16 16 S 1.81002 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00049 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00121 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99856 * 0.02562 * 19 17 16 22 22 H 1.48489 * 109.47437 * 89.99924 * 21 19 17 23 23 H 1.48500 * 109.46931 * 210.00082 * 21 19 17 24 24 H 1.48503 * 109.46655 * 329.99597 * 21 19 17 25 25 C 1.45225 * 121.24494 * 310.96746 * 12 11 10 26 26 C 1.47175 * 111.00585 * 190.00301 * 5 4 3 27 27 H 1.09005 * 103.92296 * 318.07548 * 26 5 4 28 28 H 1.09002 * 109.47333 * 344.56014 * 1 2 3 29 29 H 1.08994 * 109.47296 * 104.56554 * 1 2 3 30 30 H 1.09001 * 109.46860 * 224.56596 * 1 2 3 31 31 H 1.09007 * 109.47032 * 189.45259 * 4 3 2 32 32 H 1.09004 * 109.47429 * 69.45481 * 4 3 2 33 33 H 1.08998 * 110.75551 * 279.82859 * 6 5 4 34 34 H 1.09001 * 110.74731 * 43.18449 * 6 5 4 35 35 H 1.09003 * 110.65394 * 82.38580 * 7 6 5 36 36 H 1.09001 * 110.66296 * 205.33547 * 7 6 5 37 37 H 1.09003 * 108.39031 * 328.02896 * 10 8 7 38 38 H 1.09001 * 108.39812 * 85.38975 * 10 8 7 39 39 H 1.08999 * 110.33542 * 286.94683 * 11 10 8 40 40 H 1.08996 * 108.59372 * 167.49330 * 11 10 8 41 41 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 43 43 H 0.96999 * 120.00138 * 179.97438 * 20 19 17 44 44 H 1.08991 * 108.52385 * 157.89828 * 25 12 11 45 45 H 1.08995 * 108.51829 * 275.56903 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0015 0.0006 5 7 4.6078 -0.8783 1.0702 6 6 4.4574 -2.3150 0.6923 7 6 5.4284 -3.0291 1.6675 8 6 6.6026 -2.0254 1.8006 9 1 7.4362 -2.3617 1.1840 10 6 7.0186 -2.0111 3.2542 11 6 7.6892 -0.7220 3.7028 12 7 6.9230 0.4347 3.2643 13 6 6.6308 1.4084 4.1492 14 8 5.9971 2.3798 3.7947 15 6 7.0919 1.2903 5.5791 16 16 6.5486 2.7442 6.5103 17 6 7.2046 2.3532 8.0981 18 1 7.7518 1.4337 8.2449 19 6 7.0172 3.2265 9.1607 20 7 7.5069 2.9342 10.3470 21 14 6.0690 4.8159 8.9073 22 1 4.6270 4.5794 9.1708 23 1 6.5796 5.8511 9.8415 24 1 6.2470 5.2807 7.5082 25 6 6.4720 0.5624 1.8898 26 6 6.0591 -0.7225 1.2582 27 1 6.4509 -0.6692 0.2424 28 1 -0.3634 0.9906 0.2736 29 1 -0.3633 -0.2584 -0.9946 30 1 -0.3633 -0.7322 0.7212 31 1 4.4806 1.0155 0.1695 32 1 4.4820 -0.3590 -0.9616 33 1 3.4330 -2.6513 0.8520 34 1 4.7611 -2.4761 -0.3421 35 1 4.9541 -3.1856 2.6364 36 1 5.7663 -3.9770 1.2485 37 1 6.1359 -2.1961 3.8664 38 1 7.7255 -2.8245 3.4178 39 1 8.6976 -0.6575 3.2941 40 1 7.7460 -0.7204 4.7913 41 1 6.6649 0.3921 6.0254 42 1 8.1797 1.2276 5.6061 43 1 7.3763 3.5446 11.0895 44 1 5.6250 1.2479 1.8656 45 1 7.2807 0.9921 1.2987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222306051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:31 Heat of formation + Delta-G solvation = 29.012173 kcal Electronic energy + Delta-G solvation = -24795.234195 eV Core-core repulsion = 21326.443446 eV Total energy + Delta-G solvation = -3468.790749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87478 -39.00750 -36.23635 -34.64796 -33.41200 -32.41167 -31.49612 -30.50652 -28.95895 -28.37439 -25.64018 -25.58978 -24.59072 -23.08830 -21.63744 -20.34959 -18.37623 -17.79115 -17.28161 -16.72631 -16.30543 -15.84877 -15.60856 -15.20574 -15.02269 -14.87684 -14.19724 -14.14841 -13.90514 -13.76886 -13.72260 -13.45980 -13.26429 -13.03089 -12.99886 -12.75616 -12.28013 -12.16022 -11.93428 -11.72172 -11.43185 -11.22112 -11.05536 -10.98102 -10.84996 -10.69349 -10.55487 -10.05895 -9.87840 -9.82957 -9.41933 -8.97596 -8.75358 -8.52593 -8.44642 -6.88361 -6.26435 -3.97560 2.41561 2.58876 2.75848 2.99330 3.24602 3.36147 3.53483 3.62437 3.65182 4.03614 4.20535 4.29825 4.35926 4.46629 4.65550 4.74800 4.88756 4.97399 5.00906 5.04240 5.12489 5.12867 5.13873 5.17615 5.31725 5.33573 5.36895 5.40264 5.44490 5.50911 5.55959 5.61952 5.64196 5.71886 5.74481 5.80178 5.84328 5.94488 6.02139 6.05465 6.54487 6.63937 6.72481 7.50520 7.52216 7.96697 8.43898 8.50347 9.20064 10.82811 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.003130 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.930825 B = 8942.639558 C =10235.204326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.181 4.181 3 C -0.177 4.177 4 C 0.158 3.842 5 N -0.503 5.503 6 C 0.033 3.967 7 C -0.121 4.121 8 C -0.078 4.078 9 H 0.079 0.921 10 C -0.124 4.124 11 C 0.108 3.892 12 N -0.605 5.605 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.120 4.120 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.130 3.870 26 C 0.071 3.929 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.270 0.730 44 H 0.096 0.904 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 -13.771 -23.314 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.182 4.182 3 C -0.178 4.178 4 C 0.032 3.968 5 N -0.228 5.228 6 C -0.095 4.095 7 C -0.159 4.159 8 C -0.097 4.097 9 H 0.098 0.902 10 C -0.162 4.162 11 C -0.016 4.016 12 N -0.340 5.340 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.006 3.994 26 C -0.038 4.038 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.623 -12.132 -23.197 26.775 hybrid contribution 0.836 -0.748 -0.190 1.138 sum -4.787 -12.880 -23.387 27.125 Atomic orbital electron populations 1.18850 0.84678 1.03246 1.02740 1.22374 0.93854 1.01037 1.00962 1.21853 0.93067 1.01578 1.01287 1.19110 0.85488 0.99061 0.93174 1.64895 1.14589 1.03747 1.39537 1.23406 1.00752 0.88055 0.97261 1.22868 0.95120 0.97410 1.00490 1.20864 0.97912 0.93634 0.97317 0.90237 1.21372 1.01769 0.97677 0.95419 1.21219 0.94254 0.84776 1.01352 1.47104 1.55941 1.21478 1.09519 1.20322 0.78808 0.82082 0.86855 1.90683 1.38673 1.30626 1.79170 1.23309 1.04609 1.05056 0.94089 1.84809 1.74439 1.24765 1.07659 1.22313 1.40869 1.10903 0.92635 0.89405 1.24709 0.94553 0.98007 0.94036 1.69938 1.44058 1.37286 1.00521 0.86736 0.80910 0.83300 0.80934 1.19208 1.19983 1.15903 1.20120 1.00647 0.96124 0.82508 1.20914 0.88240 0.95600 0.98999 0.94809 0.90121 0.90461 0.90101 0.88292 0.92246 0.89863 0.93431 0.90203 0.90869 0.90896 0.90728 0.91677 0.88992 0.88507 0.88511 0.91972 0.88606 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.30 10.32 34.37 0.35 0.06 16 2 C -0.18 -2.09 14.13 -37.12 -0.52 -2.61 16 3 C -0.18 -2.16 13.28 -37.12 -0.49 -2.65 16 4 C 0.16 1.65 5.03 -6.61 -0.03 1.61 16 5 N -0.50 -5.55 5.12 -229.94 -1.18 -6.73 16 6 C 0.03 0.29 6.17 -1.40 -0.01 0.28 16 7 C -0.12 -0.94 6.54 -24.58 -0.16 -1.10 16 8 C -0.08 -0.65 3.20 -91.34 -0.29 -0.94 16 9 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 10 C -0.12 -1.10 5.43 -28.11 -0.15 -1.25 16 11 C 0.11 1.16 6.28 -5.04 -0.03 1.13 16 12 N -0.61 -8.60 3.05 -178.41 -0.55 -9.15 16 13 C 0.53 10.01 7.66 -10.98 -0.08 9.92 16 14 O -0.52 -11.64 15.22 5.56 0.08 -11.55 16 15 C -0.12 -2.39 4.47 36.01 0.16 -2.23 16 16 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 17 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 18 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 21 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 22 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 25 C 0.13 1.63 5.79 -6.68 -0.04 1.59 16 26 C 0.07 0.72 2.13 -70.41 -0.15 0.57 16 27 H 0.03 0.29 7.58 -51.93 -0.39 -0.10 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.04 6.90 -51.92 -0.36 0.68 16 32 H 0.06 0.50 7.80 -51.93 -0.40 0.09 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.36 7.82 -51.93 -0.41 -0.04 16 35 H 0.08 0.70 7.13 -51.93 -0.37 0.33 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.74 7.14 -51.93 -0.37 0.37 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.03 5.74 -51.93 -0.30 0.73 16 41 H 0.10 1.81 7.54 -51.92 -0.39 1.42 16 42 H 0.10 1.78 7.96 -51.91 -0.41 1.36 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.10 1.44 5.85 -51.93 -0.30 1.14 16 45 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -35.28 371.62 -10.30 -45.58 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.09 Total: -1.72 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.24 Total: -7.68 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.95 Total: -41.87 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.28 -10.30 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222306051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.588 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds