Wall clock time and date at job start Tue Mar 31 2020 14:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 245.98446 * 3 2 1 5 5 N 1.46895 * 109.47308 * 309.45229 * 4 3 2 6 6 C 1.49321 * 111.00386 * 75.46706 * 5 4 3 7 7 C 1.55035 * 102.76729 * 161.50356 * 6 5 4 8 8 C 1.55044 * 103.30469 * 324.40106 * 7 6 5 9 9 H 1.09010 * 109.32420 * 258.11643 * 8 7 6 10 10 C 1.51197 * 107.28294 * 139.27929 * 8 7 6 11 11 C 1.52078 * 114.39354 * 205.43213 * 10 8 7 12 12 N 1.45509 * 110.65068 * 47.77599 * 11 10 8 13 13 C 1.34780 * 119.37978 * 131.23767 * 12 11 10 14 14 O 1.21280 * 120.00423 * 179.72912 * 13 12 11 15 15 C 1.50701 * 119.99795 * 359.73589 * 13 12 11 16 16 S 1.81002 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00049 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00121 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99856 * 0.02562 * 19 17 16 22 22 H 1.48489 * 109.47437 * 89.99924 * 21 19 17 23 23 H 1.48500 * 109.46931 * 210.00082 * 21 19 17 24 24 H 1.48503 * 109.46655 * 329.99597 * 21 19 17 25 25 C 1.45225 * 121.24494 * 310.96746 * 12 11 10 26 26 C 1.47175 * 111.00585 * 190.00301 * 5 4 3 27 27 H 1.09005 * 103.92296 * 318.07548 * 26 5 4 28 28 H 1.09002 * 109.47333 * 344.56014 * 1 2 3 29 29 H 1.08994 * 109.47296 * 104.56554 * 1 2 3 30 30 H 1.09001 * 109.46860 * 224.56596 * 1 2 3 31 31 H 1.09007 * 109.47032 * 189.45259 * 4 3 2 32 32 H 1.09004 * 109.47429 * 69.45481 * 4 3 2 33 33 H 1.08998 * 110.75551 * 279.82859 * 6 5 4 34 34 H 1.09001 * 110.74731 * 43.18449 * 6 5 4 35 35 H 1.09003 * 110.65394 * 82.38580 * 7 6 5 36 36 H 1.09001 * 110.66296 * 205.33547 * 7 6 5 37 37 H 1.09003 * 108.39031 * 328.02896 * 10 8 7 38 38 H 1.09001 * 108.39812 * 85.38975 * 10 8 7 39 39 H 1.08999 * 110.33542 * 286.94683 * 11 10 8 40 40 H 1.08996 * 108.59372 * 167.49330 * 11 10 8 41 41 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 43 43 H 0.96999 * 120.00138 * 179.97438 * 20 19 17 44 44 H 1.08991 * 108.52385 * 157.89828 * 25 12 11 45 45 H 1.08995 * 108.51829 * 275.56903 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0015 0.0006 5 7 4.6078 -0.8783 1.0702 6 6 4.4574 -2.3150 0.6923 7 6 5.4284 -3.0291 1.6675 8 6 6.6026 -2.0254 1.8006 9 1 7.4362 -2.3617 1.1840 10 6 7.0186 -2.0111 3.2542 11 6 7.6892 -0.7220 3.7028 12 7 6.9230 0.4347 3.2643 13 6 6.6308 1.4084 4.1492 14 8 5.9971 2.3798 3.7947 15 6 7.0919 1.2903 5.5791 16 16 6.5486 2.7442 6.5103 17 6 7.2046 2.3532 8.0981 18 1 7.7518 1.4337 8.2449 19 6 7.0172 3.2265 9.1607 20 7 7.5069 2.9342 10.3470 21 14 6.0690 4.8159 8.9073 22 1 4.6270 4.5794 9.1708 23 1 6.5796 5.8511 9.8415 24 1 6.2470 5.2807 7.5082 25 6 6.4720 0.5624 1.8898 26 6 6.0591 -0.7225 1.2582 27 1 6.4509 -0.6692 0.2424 28 1 -0.3634 0.9906 0.2736 29 1 -0.3633 -0.2584 -0.9946 30 1 -0.3633 -0.7322 0.7212 31 1 4.4806 1.0155 0.1695 32 1 4.4820 -0.3590 -0.9616 33 1 3.4330 -2.6513 0.8520 34 1 4.7611 -2.4761 -0.3421 35 1 4.9541 -3.1856 2.6364 36 1 5.7663 -3.9770 1.2485 37 1 6.1359 -2.1961 3.8664 38 1 7.7255 -2.8245 3.4178 39 1 8.6976 -0.6575 3.2941 40 1 7.7460 -0.7204 4.7913 41 1 6.6649 0.3921 6.0254 42 1 8.1797 1.2276 5.6061 43 1 7.3763 3.5446 11.0895 44 1 5.6250 1.2479 1.8656 45 1 7.2807 0.9921 1.2987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222306051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:30 Heat of formation + Delta-G solvation = 5.693594 kcal Electronic energy + Delta-G solvation = -24796.245365 eV Core-core repulsion = 21326.443446 eV Total energy + Delta-G solvation = -3469.801919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81462 -40.19967 -37.30947 -35.52613 -34.67369 -34.20387 -32.57889 -31.33575 -30.18226 -29.18408 -27.86076 -26.40554 -25.56133 -23.92147 -22.29930 -21.58317 -19.84956 -19.13664 -18.36477 -17.94706 -17.36430 -17.08462 -16.90797 -16.49994 -16.18020 -15.89302 -15.70684 -15.10481 -14.95260 -14.93044 -14.75484 -14.42575 -14.23601 -14.13135 -14.01231 -13.82842 -13.54334 -13.35664 -13.10899 -13.01886 -12.75684 -12.60956 -12.57879 -12.15911 -11.86959 -11.78917 -11.53787 -11.42423 -11.17540 -10.92467 -10.85498 -10.67817 -10.51158 -9.69104 -9.47762 -9.00846 -8.51851 -6.22623 0.96874 1.30763 1.45486 1.50676 1.54448 1.57977 1.72863 2.08753 2.24914 2.68722 2.86387 2.90388 3.29946 3.48250 3.58804 3.63534 3.79210 4.04357 4.10990 4.16689 4.23298 4.28532 4.34249 4.37981 4.40325 4.44571 4.51526 4.66515 4.67658 4.73564 4.78158 4.79199 4.82038 4.88869 4.97638 5.04590 5.05381 5.18730 5.22898 5.33973 5.60247 5.70910 5.85149 5.92191 6.11174 6.25070 6.67871 6.93576 7.09323 8.60530 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.003130 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.930825 B = 8942.639558 C =10235.204326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.194 4.194 3 C -0.212 4.212 4 C 0.159 3.841 5 N -0.531 5.531 6 C 0.034 3.966 7 C -0.114 4.114 8 C -0.077 4.077 9 H 0.109 0.891 10 C -0.120 4.120 11 C 0.097 3.903 12 N -0.592 5.592 13 C 0.529 3.471 14 O -0.564 6.564 15 C -0.103 4.103 16 S -0.180 6.180 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.257 1.257 24 H -0.238 1.238 25 C 0.128 3.872 26 C 0.069 3.931 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -15.350 -25.327 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.196 4.196 3 C -0.212 4.212 4 C 0.033 3.967 5 N -0.256 5.256 6 C -0.093 4.093 7 C -0.152 4.152 8 C -0.096 4.096 9 H 0.127 0.873 10 C -0.158 4.158 11 C -0.025 4.025 12 N -0.325 5.325 13 C 0.317 3.683 14 O -0.443 6.443 15 C -0.254 4.254 16 S 0.046 5.954 17 C -0.673 4.673 18 H 0.082 0.918 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.181 1.181 24 H -0.162 1.162 25 C 0.005 3.995 26 C -0.040 4.040 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.114 -13.765 -25.225 29.188 hybrid contribution 0.696 -0.395 0.350 0.874 sum -4.418 -14.160 -24.875 28.962 Atomic orbital electron populations 1.19070 0.82432 1.03981 1.04324 1.23365 0.95256 1.00484 1.00463 1.22525 0.94193 1.02393 1.02135 1.19142 0.84719 0.98722 0.94131 1.64826 1.15377 1.04997 1.40410 1.23419 1.00510 0.86831 0.98515 1.22839 0.94488 0.98276 0.99616 1.20952 0.98868 0.92576 0.97172 0.87330 1.21360 1.01621 0.97234 0.95594 1.21566 0.95306 0.84285 1.01321 1.47144 1.54733 1.21040 1.09550 1.20109 0.78747 0.82655 0.86832 1.90666 1.41094 1.32760 1.79765 1.23267 1.05623 1.02160 0.94308 1.84767 1.74890 1.28863 1.06844 1.22429 1.40443 1.10046 0.94401 0.91769 1.25527 0.95429 1.01038 0.93856 1.70008 1.45287 1.38746 1.01368 0.85895 0.79725 0.80023 0.80912 1.18843 1.18143 1.16229 1.20295 1.00177 0.97440 0.81593 1.20900 0.88006 0.95145 0.99924 0.92553 0.89420 0.88333 0.89183 0.89268 0.90100 0.91145 0.91720 0.91690 0.88286 0.92720 0.87700 0.88929 0.89634 0.87294 0.86706 0.91339 0.91684 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.60 10.32 70.18 0.72 0.12 16 2 C -0.19 -4.47 14.13 31.13 0.44 -4.03 16 3 C -0.21 -5.21 13.28 31.13 0.41 -4.80 16 4 C 0.16 3.26 5.03 84.50 0.42 3.68 16 5 N -0.53 -11.16 5.12 -881.39 -4.51 -15.67 16 6 C 0.03 0.54 6.17 86.53 0.53 1.07 16 7 C -0.11 -1.44 6.54 31.99 0.21 -1.23 16 8 C -0.08 -0.99 3.20 -11.26 -0.04 -1.03 16 9 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 10 C -0.12 -1.75 5.43 29.70 0.16 -1.58 16 11 C 0.10 1.84 6.28 86.26 0.54 2.38 16 12 N -0.59 -16.06 3.05 -836.75 -2.56 -18.61 16 13 C 0.53 19.86 7.66 87.66 0.67 20.53 16 14 O -0.56 -25.96 15.22 -3.03 -0.05 -26.00 16 15 C -0.10 -4.07 4.47 71.24 0.32 -3.76 16 16 S -0.18 -9.42 18.55 -56.49 -1.05 -10.47 16 17 C -0.53 -31.01 10.04 67.96 0.68 -30.32 16 18 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 19 C 0.05 2.79 5.50 84.86 0.47 3.26 16 20 N -0.92 -56.19 13.97 21.65 0.30 -55.89 16 21 Si 0.91 45.82 27.74 68.60 1.90 47.73 16 22 H -0.26 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.24 -12.02 6.74 99.48 0.67 -11.35 16 25 C 0.13 3.06 5.79 85.35 0.49 3.56 16 26 C 0.07 1.22 2.13 43.02 0.09 1.31 16 27 H 0.06 0.77 7.58 -2.38 -0.02 0.75 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.93 6.90 -2.38 -0.02 1.91 16 32 H 0.08 1.23 7.80 -2.39 -0.02 1.21 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 0.79 7.82 -2.39 -0.02 0.77 16 35 H 0.06 1.02 7.13 -2.39 -0.02 1.00 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 1.01 7.14 -2.39 -0.02 0.99 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.74 5.74 -2.39 -0.01 1.73 16 41 H 0.11 4.04 7.54 -2.39 -0.02 4.02 16 42 H 0.11 4.12 7.96 -2.40 -0.02 4.10 16 43 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.06 2.00 5.85 -2.39 -0.01 1.99 16 45 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 Total: -1.00 -78.68 371.62 1.12 -77.56 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.94 Total: 12.19 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 6.14 Total: -10.83 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -6.77 Total: -90.18 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.73 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.05 Total: -10.47 kcal Total: -78.68 1.12 -77.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222306051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.254 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds