Wall clock time and date at job start Tue Mar 31 2020 14:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99632 * 2 1 4 4 C 1.52998 * 109.47137 * 125.00022 * 3 2 1 5 5 H 1.09001 * 109.47411 * 55.00017 * 4 3 2 6 6 O 1.42906 * 109.47205 * 294.99818 * 4 3 2 7 7 C 1.42900 * 113.99774 * 90.00138 * 6 4 3 8 8 C 1.52998 * 109.46835 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47132 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47239 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47239 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47273 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00051 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00269 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99999 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00237 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46996 * 60.00620 * 16 14 12 18 18 H 1.48506 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47197 * 300.00458 * 16 14 12 20 20 C 1.50696 * 109.47396 * 174.99920 * 4 3 2 21 21 C 1.38247 * 119.98658 * 265.00270 * 20 4 3 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 4 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00135 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00135 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47543 * 4.99689 * 3 2 1 31 31 H 1.09003 * 109.46922 * 244.99754 * 3 2 1 32 32 H 1.09004 * 109.46636 * 299.99900 * 7 6 4 33 33 H 1.08995 * 109.47586 * 60.00284 * 7 6 4 34 34 H 1.08997 * 109.47003 * 299.99614 * 8 7 6 35 35 H 1.09003 * 109.47384 * 59.99523 * 8 7 6 36 36 H 1.08997 * 109.47164 * 299.99885 * 9 8 7 37 37 H 1.08995 * 109.47135 * 60.00048 * 9 8 7 38 38 H 1.08997 * 109.47212 * 300.00178 * 10 9 8 39 39 H 1.09003 * 109.47068 * 60.00022 * 10 9 8 40 40 H 1.08997 * 109.47164 * 300.00208 * 11 10 9 41 41 H 1.09003 * 109.47073 * 60.00025 * 11 10 9 42 42 H 0.97004 * 120.00060 * 179.97438 * 15 14 12 43 43 H 1.08003 * 119.99321 * 359.97438 * 21 20 4 44 44 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 46 46 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 8 2.2971 1.3226 2.4054 7 6 2.0266 0.0132 2.9097 8 6 1.2358 0.1228 4.2149 9 6 0.9456 -1.2791 4.7546 10 6 0.1553 -1.1695 6.0601 11 6 -0.1343 -2.5714 6.6001 12 6 -0.9121 -2.4635 7.8864 13 1 -1.1741 -1.4922 8.2791 14 6 -1.2903 -3.6048 8.5612 15 7 -0.9717 -4.7877 8.0827 16 14 -2.2551 -3.4711 10.1552 17 1 -3.5359 -2.7640 9.9006 18 1 -2.5361 -4.8318 10.6794 19 1 -1.4599 -2.7111 11.1529 20 6 3.8746 2.5826 1.1121 21 6 5.1205 2.5454 0.5142 22 6 5.8909 3.6912 0.4496 23 6 5.4151 4.8754 0.9841 24 17 6.3819 6.3150 0.9028 25 6 4.1709 4.9104 1.5880 26 6 3.3987 3.7656 1.6461 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4431 -0.5447 2.1774 33 1 2.9668 -0.5055 3.0967 34 1 1.8190 0.6809 4.9473 35 1 0.2956 0.6415 4.0276 36 1 0.3623 -1.8369 4.0220 37 1 1.8856 -1.7981 4.9418 38 1 0.7390 -0.6119 6.7925 39 1 -0.7847 -0.6504 5.8733 40 1 -0.7178 -3.1295 5.8679 41 1 0.8060 -3.0902 6.7871 42 1 -1.2374 -5.5907 8.5577 43 1 5.4920 1.6209 0.0974 44 1 6.8641 3.6621 -0.0179 45 1 3.8009 5.8334 2.0094 46 1 2.4252 3.7941 2.1129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:44 Heat of formation + Delta-G solvation = -44.677591 kcal Electronic energy + Delta-G solvation = -23484.505653 eV Core-core repulsion = 19978.183019 eV Total energy + Delta-G solvation = -3506.322635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13065 -38.42246 -36.78844 -35.54329 -34.59483 -32.98472 -32.12776 -31.43664 -30.16721 -28.46706 -26.38829 -24.20804 -23.52250 -22.96797 -21.38975 -20.97438 -20.02843 -19.96003 -17.58843 -16.97438 -16.19459 -16.13485 -16.00614 -15.39157 -15.05053 -14.63698 -14.49908 -14.39259 -13.85896 -13.85424 -13.65279 -13.24934 -12.93149 -12.59527 -12.26235 -12.04135 -12.00576 -11.86837 -11.72920 -11.49939 -11.35556 -11.19168 -11.05938 -11.00862 -10.90401 -10.48435 -10.45375 -10.37854 -10.11114 -9.61687 -9.40303 -9.24185 -9.19429 -9.00894 -8.86507 -8.31451 -5.96857 -3.98928 0.72036 0.93331 1.76754 2.08421 3.20226 3.35137 3.39118 3.41888 3.48450 4.33141 4.42074 4.48545 4.52546 4.67194 4.77468 4.96041 4.96773 5.04558 5.11536 5.19654 5.27884 5.31265 5.32810 5.38611 5.54032 5.58195 5.67811 5.73209 5.76323 5.78127 5.82960 5.89014 6.10045 6.14877 6.30717 6.40224 6.43360 6.43729 6.52013 6.55426 6.83770 6.97319 7.15445 7.20045 7.71664 7.87546 8.04055 8.47348 9.08322 9.64811 11.14439 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.001876 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.074644 B =14924.555622 C =16050.622230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C -0.109 4.109 4 C 0.134 3.866 5 H 0.072 0.928 6 O -0.375 6.375 7 C 0.057 3.943 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.079 4.079 21 C -0.100 4.100 22 C -0.112 4.112 23 C -0.035 4.035 24 Cl -0.075 7.075 25 C -0.113 4.113 26 C -0.077 4.077 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 17.653 -21.563 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.180 4.180 3 C -0.146 4.146 4 C 0.076 3.924 5 H 0.090 0.910 6 O -0.294 6.294 7 C -0.019 4.019 8 C -0.153 4.153 9 C -0.152 4.152 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.061 4.061 24 Cl -0.046 7.046 25 C -0.131 4.131 26 C -0.095 4.095 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.055 17.757 -21.434 30.744 hybrid contribution -0.341 -0.189 0.797 0.888 sum 12.715 17.568 -20.636 29.936 Atomic orbital electron populations 1.23888 0.95874 1.02123 0.99854 1.22813 0.96289 0.97877 1.01027 1.21277 0.98813 0.96608 0.97941 1.20758 0.91510 0.94704 0.85457 0.91031 1.87903 1.74639 1.29003 1.37892 1.22847 0.98911 0.83739 0.96356 1.21574 0.99948 0.99052 0.94676 1.21573 1.00565 0.94407 0.98694 1.21611 0.98016 1.00973 0.94095 1.19104 0.96597 0.90506 0.95495 1.21257 1.34761 0.92356 1.07457 0.92789 1.25037 0.96256 0.95473 0.97803 1.69960 1.46875 0.97318 1.39482 0.86665 0.80535 0.77002 0.83830 1.20261 1.21317 1.20262 1.19896 0.94474 0.95104 0.98448 1.20936 0.93288 0.98253 0.99326 1.20985 1.00599 0.91070 1.00453 1.20982 0.93697 0.88379 1.03075 1.98374 1.71123 1.37882 1.97210 1.21122 0.92842 0.99665 0.99494 1.21038 1.00304 0.90927 0.97278 0.88243 0.88512 0.87374 0.90386 0.90111 0.92398 0.93639 0.91604 0.91510 0.92471 0.92512 0.93444 0.93437 0.96717 0.96724 0.93021 0.84990 0.84859 0.84833 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 14.12 29.01 0.41 -1.22 16 2 C -0.16 -1.40 6.89 -36.03 -0.25 -1.65 16 3 C -0.11 -0.88 5.35 -27.89 -0.15 -1.03 16 4 C 0.13 1.21 2.53 -27.89 -0.07 1.14 16 5 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 6 O -0.38 -4.37 9.09 -35.23 -0.32 -4.69 16 7 C 0.06 0.69 5.52 37.16 0.21 0.90 16 8 C -0.11 -1.62 5.58 -26.73 -0.15 -1.77 16 9 C -0.11 -1.92 5.21 -26.73 -0.14 -2.06 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C -0.08 -0.70 5.01 -104.62 -0.52 -1.22 16 21 C -0.10 -0.75 9.68 -39.59 -0.38 -1.13 16 22 C -0.11 -0.86 9.83 -39.55 -0.39 -1.25 16 23 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 24 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 25 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 26 C -0.08 -0.70 9.35 -39.59 -0.37 -1.07 16 27 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 29 H 0.11 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.66 5.50 -51.93 -0.29 0.38 16 33 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.14 1.27 7.63 -52.49 -0.40 0.87 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -30.85 396.28 -11.05 -41.90 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.78 Total: -3.31 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -3.13 Total: -28.12 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.32 Total: -4.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.85 -11.05 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.780 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds