Wall clock time and date at job start Tue Mar 31 2020 14:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99632 * 2 1 4 4 C 1.52998 * 109.47137 * 125.00022 * 3 2 1 5 5 H 1.09001 * 109.47411 * 55.00017 * 4 3 2 6 6 O 1.42906 * 109.47205 * 294.99818 * 4 3 2 7 7 C 1.42900 * 113.99774 * 90.00138 * 6 4 3 8 8 C 1.52998 * 109.46835 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47132 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47239 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47239 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47273 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00051 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00269 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99999 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00237 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46996 * 60.00620 * 16 14 12 18 18 H 1.48506 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47197 * 300.00458 * 16 14 12 20 20 C 1.50696 * 109.47396 * 174.99920 * 4 3 2 21 21 C 1.38247 * 119.98658 * 265.00270 * 20 4 3 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 4 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 1.08002 * 119.99522 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00135 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00135 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47543 * 4.99689 * 3 2 1 31 31 H 1.09003 * 109.46922 * 244.99754 * 3 2 1 32 32 H 1.09004 * 109.46636 * 299.99900 * 7 6 4 33 33 H 1.08995 * 109.47586 * 60.00284 * 7 6 4 34 34 H 1.08997 * 109.47003 * 299.99614 * 8 7 6 35 35 H 1.09003 * 109.47384 * 59.99523 * 8 7 6 36 36 H 1.08997 * 109.47164 * 299.99885 * 9 8 7 37 37 H 1.08995 * 109.47135 * 60.00048 * 9 8 7 38 38 H 1.08997 * 109.47212 * 300.00178 * 10 9 8 39 39 H 1.09003 * 109.47068 * 60.00022 * 10 9 8 40 40 H 1.08997 * 109.47164 * 300.00208 * 11 10 9 41 41 H 1.09003 * 109.47073 * 60.00025 * 11 10 9 42 42 H 0.97004 * 120.00060 * 179.97438 * 15 14 12 43 43 H 1.08003 * 119.99321 * 359.97438 * 21 20 4 44 44 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 46 46 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6827 0.4574 1.1404 6 8 2.2971 1.3226 2.4054 7 6 2.0266 0.0132 2.9097 8 6 1.2358 0.1228 4.2149 9 6 0.9456 -1.2791 4.7546 10 6 0.1553 -1.1695 6.0601 11 6 -0.1343 -2.5714 6.6001 12 6 -0.9121 -2.4635 7.8864 13 1 -1.1741 -1.4922 8.2791 14 6 -1.2903 -3.6048 8.5612 15 7 -0.9717 -4.7877 8.0827 16 14 -2.2551 -3.4711 10.1552 17 1 -3.5359 -2.7640 9.9006 18 1 -2.5361 -4.8318 10.6794 19 1 -1.4599 -2.7111 11.1529 20 6 3.8746 2.5826 1.1121 21 6 5.1205 2.5454 0.5142 22 6 5.8909 3.6912 0.4496 23 6 5.4151 4.8754 0.9841 24 17 6.3819 6.3150 0.9028 25 6 4.1709 4.9104 1.5880 26 6 3.3987 3.7656 1.6461 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4431 -0.5447 2.1774 33 1 2.9668 -0.5055 3.0967 34 1 1.8190 0.6809 4.9473 35 1 0.2956 0.6415 4.0276 36 1 0.3623 -1.8369 4.0220 37 1 1.8856 -1.7981 4.9418 38 1 0.7390 -0.6119 6.7925 39 1 -0.7847 -0.6504 5.8733 40 1 -0.7178 -3.1295 5.8679 41 1 0.8060 -3.0902 6.7871 42 1 -1.2374 -5.5907 8.5577 43 1 5.4920 1.6209 0.0974 44 1 6.8641 3.6621 -0.0179 45 1 3.8009 5.8334 2.0094 46 1 2.4252 3.7941 2.1129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:44 Heat of formation + Delta-G solvation = -57.591557 kcal Electronic energy + Delta-G solvation = -23485.065645 eV Core-core repulsion = 19978.183019 eV Total energy + Delta-G solvation = -3506.882626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79154 -39.19207 -37.46243 -36.93707 -35.53863 -34.74553 -33.09213 -32.06562 -31.67200 -29.20592 -28.02649 -25.33120 -24.61042 -23.76843 -22.43646 -22.00758 -21.60953 -20.67957 -18.44624 -18.20281 -17.70674 -17.11840 -16.70275 -16.50127 -16.17951 -15.84842 -15.69346 -15.13526 -14.68102 -14.52639 -14.46115 -14.41608 -14.28052 -13.92074 -13.51855 -13.30347 -13.16524 -12.80756 -12.75312 -12.59465 -12.53435 -12.37242 -12.30806 -12.13410 -11.87286 -11.84467 -11.71506 -11.68343 -11.33418 -11.30465 -11.00252 -10.89783 -10.54222 -10.00655 -9.91470 -9.53023 -8.19475 -6.30630 0.08897 0.32950 1.14489 1.39612 1.40701 1.42880 1.50815 2.40978 2.52399 2.72892 3.13020 3.64665 3.82808 3.95374 4.01398 4.05268 4.13461 4.13767 4.32848 4.36572 4.39383 4.42840 4.47161 4.51338 4.58039 4.70905 4.73587 4.78732 4.92014 4.97824 5.01604 5.03811 5.09357 5.12642 5.22365 5.26490 5.31686 5.33772 5.40595 5.51218 5.56562 5.75746 5.79484 5.80834 5.87266 5.87888 6.26943 6.33389 6.86443 7.38369 8.91967 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.001876 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.074644 B =14924.555622 C =16050.622230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.104 4.104 4 C 0.133 3.867 5 H 0.085 0.915 6 O -0.389 6.389 7 C 0.063 3.937 8 C -0.107 4.107 9 C -0.105 4.105 10 C -0.100 4.100 11 C 0.022 3.978 12 C -0.546 4.546 13 H 0.058 0.942 14 C -0.003 4.003 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.088 4.088 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.045 4.045 24 Cl -0.075 7.075 25 C -0.120 4.120 26 C -0.090 4.090 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.049 0.951 40 H -0.009 1.009 41 H -0.009 1.009 42 H 0.264 0.736 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.141 0.859 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.672 18.295 -21.945 31.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.180 4.180 3 C -0.142 4.142 4 C 0.075 3.925 5 H 0.103 0.897 6 O -0.309 6.309 7 C -0.013 4.013 8 C -0.144 4.144 9 C -0.143 4.143 10 C -0.137 4.137 11 C -0.015 4.015 12 C -0.584 4.584 13 H 0.076 0.924 14 C -0.200 4.200 15 N -0.573 5.573 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.072 4.072 24 Cl -0.046 7.046 25 C -0.139 4.139 26 C -0.108 4.108 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.174 0.826 44 H 0.169 0.831 45 H 0.159 0.841 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.684 18.419 -21.828 31.670 hybrid contribution -0.501 -0.381 0.880 1.082 sum 13.183 18.038 -20.948 30.626 Atomic orbital electron populations 1.23968 0.96289 1.02182 1.00672 1.22966 0.96229 0.98492 1.00263 1.21245 0.98578 0.95982 0.98345 1.20895 0.91650 0.95372 0.84556 0.89747 1.87875 1.75218 1.28563 1.39212 1.22682 0.98997 0.84222 0.95363 1.21401 1.00297 0.96880 0.95838 1.21414 0.99884 0.96348 0.96640 1.21446 0.98845 0.97372 0.96056 1.19040 0.94708 0.93218 0.94566 1.21720 1.35298 0.92766 1.08626 0.92363 1.26007 0.97267 0.95024 1.01716 1.70092 1.47929 0.98127 1.41172 0.85506 0.79166 0.77340 0.79065 1.19175 1.20712 1.19211 1.19979 0.95098 0.94778 0.98973 1.21197 0.92545 0.99184 0.98594 1.21254 1.01335 0.90694 0.99962 1.21139 0.93789 0.88824 1.03421 1.98372 1.71042 1.37979 1.97221 1.21232 0.93042 0.99897 0.99698 1.21063 1.00309 0.91502 0.97938 0.88197 0.88638 0.86519 0.91226 0.88439 0.91794 0.92900 0.91842 0.91680 0.92306 0.92395 0.93332 0.93265 0.99014 0.99074 0.92778 0.82566 0.83077 0.84146 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 14.12 67.78 0.96 -2.40 16 2 C -0.16 -2.55 6.89 25.64 0.18 -2.37 16 3 C -0.10 -1.51 5.35 29.85 0.16 -1.35 16 4 C 0.13 2.15 2.53 29.85 0.08 2.23 16 5 H 0.08 1.16 7.70 -2.39 -0.02 1.14 16 6 O -0.39 -8.52 9.09 -148.98 -1.35 -9.88 16 7 C 0.06 1.42 5.52 71.98 0.40 1.82 16 8 C -0.11 -2.89 5.58 30.59 0.17 -2.72 16 9 C -0.11 -3.46 5.21 30.59 0.16 -3.30 16 10 C -0.10 -4.15 5.15 30.59 0.16 -4.00 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.55 -31.84 9.11 25.60 0.23 -31.60 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 15 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 16 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 C -0.09 -1.41 5.01 -19.86 -0.10 -1.51 16 21 C -0.10 -1.23 9.68 22.27 0.22 -1.02 16 22 C -0.11 -1.51 9.83 22.29 0.22 -1.29 16 23 C -0.05 -0.72 6.32 22.32 0.14 -0.58 16 24 Cl -0.07 -1.15 28.96 -2.72 -0.08 -1.23 16 25 C -0.12 -1.97 9.83 22.29 0.22 -1.75 16 26 C -0.09 -1.58 9.35 22.27 0.21 -1.37 16 27 H 0.10 1.68 8.06 -2.91 -0.02 1.65 16 28 H 0.10 1.63 7.84 -2.91 -0.02 1.61 16 29 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.07 1.14 7.79 -2.39 -0.02 1.12 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.36 5.50 -2.38 -0.01 1.35 16 33 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.13 2.43 7.63 -2.91 -0.02 2.40 16 Total: -1.00 -65.90 396.28 5.80 -60.10 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.92 Total: 10.93 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 4.00 Total: -49.58 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.28 Total: -57.21 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.35 Total: -9.88 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -65.90 5.80 -60.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.508 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds