Wall clock time and date at job start Tue Mar 31 2020 13:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 C 1.50692 * 109.47316 * 119.99792 * 2 1 3 5 5 C 1.38325 * 119.40858 * 274.73647 * 4 2 1 6 6 C 1.38373 * 119.46142 * 179.72960 * 5 4 2 7 7 C 1.39987 * 118.34040 * 0.52634 * 6 5 4 8 8 C 1.43205 * 120.59750 * 179.75271 * 7 6 5 9 9 N 6.80282 * 109.55283 * 121.10189 * 2 1 3 10 10 C 1.40319 * 118.80482 * 359.73721 * 7 6 5 11 11 O 1.35476 * 119.80351 * 179.97438 * 10 7 6 12 12 C 1.42898 * 117.00021 * 180.02562 * 11 10 7 13 13 H 1.08993 * 109.47058 * 30.00065 * 12 11 10 14 14 C 1.50694 * 109.46955 * 269.99837 * 12 11 10 15 15 H 1.07995 * 120.00050 * 125.46581 * 14 12 11 16 16 C 1.37885 * 120.00177 * 305.45716 * 14 12 11 17 17 N 1.31510 * 119.99484 * 8.46319 * 16 14 12 18 18 Si 1.86799 * 119.99910 * 188.46181 * 16 14 12 19 19 H 1.48494 * 109.47121 * 60.00232 * 18 16 14 20 20 H 1.48508 * 109.46704 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47108 * 299.99926 * 18 16 14 22 22 C 1.50706 * 109.46665 * 149.99810 * 12 11 10 23 23 C 1.38235 * 120.00196 * 29.27616 * 22 12 11 24 24 C 1.38234 * 119.99746 * 179.81025 * 23 22 12 25 25 C 1.38241 * 119.99964 * 0.39264 * 24 23 22 26 26 C 1.38234 * 120.00083 * 359.86082 * 25 24 23 27 27 C 1.38235 * 120.00102 * 359.95284 * 26 25 24 28 28 N 1.31914 * 119.40752 * 95.00609 * 4 2 1 29 29 H 1.09003 * 109.47165 * 60.00150 * 1 2 3 30 30 H 1.08991 * 109.47351 * 299.99748 * 1 2 3 31 31 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47572 * 240.00175 * 2 1 3 33 33 H 1.09003 * 109.47201 * 300.00443 * 3 2 1 34 34 H 1.09000 * 109.46860 * 59.99739 * 3 2 1 35 35 H 1.08994 * 109.47228 * 179.97438 * 3 2 1 36 36 H 1.08004 * 120.26880 * 359.97438 * 5 4 2 37 37 H 1.07996 * 120.83016 * 180.24098 * 6 5 4 38 38 H 0.97008 * 119.99818 * 179.97438 * 17 16 14 39 39 H 1.07998 * 119.99952 * 359.97438 * 23 22 12 40 40 H 1.07995 * 119.99960 * 180.23086 * 24 23 22 41 41 H 1.07998 * 119.99718 * 179.83427 * 25 24 23 42 42 H 1.08002 * 120.00000 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00419 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 2.1649 -0.0070 2.4141 6 6 2.6208 -0.6595 3.5460 7 6 2.9440 -2.0179 3.4452 8 6 3.4251 -2.7392 4.5849 9 7 3.8067 -3.3114 5.4890 10 6 2.7876 -2.6600 2.2074 11 8 3.0948 -3.9739 2.0869 12 6 2.9136 -4.5671 0.7995 13 1 3.0661 -3.8132 0.0274 14 6 1.5156 -5.1194 0.6933 15 1 0.8765 -4.8179 -0.1234 16 6 1.0523 -6.0099 1.6387 17 7 1.7623 -6.2500 2.7193 18 14 -0.5837 -6.8749 1.3844 19 1 -0.5320 -7.6740 0.1339 20 1 -0.8527 -7.7734 2.5359 21 1 -1.6672 -5.8645 1.2819 22 6 3.9099 -5.6829 0.6160 23 6 4.3685 -6.3875 1.7132 24 6 5.2794 -7.4136 1.5443 25 6 5.7378 -7.7296 0.2790 26 6 5.2831 -7.0215 -0.8177 27 6 4.3693 -5.9980 -0.6493 28 7 2.3428 -1.9904 1.1580 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6765 1.9565 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.9110 1.0419 2.4556 37 1 2.7290 -0.1329 4.4826 38 1 1.4362 -6.8762 3.3846 39 1 4.0132 -6.1382 2.7021 40 1 5.6349 -7.9665 2.4011 41 1 6.4514 -8.5294 0.1473 42 1 5.6415 -7.2681 -1.8062 43 1 4.0137 -5.4450 -1.5061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226353673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:13 Heat of formation + Delta-G solvation = 48.309883 kcal Electronic energy + Delta-G solvation = -26865.815707 eV Core-core repulsion = 23262.417818 eV Total energy + Delta-G solvation = -3603.397889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29017 -38.49159 -37.17276 -36.10296 -34.82920 -33.01039 -32.05129 -30.84243 -29.91142 -29.30907 -27.14702 -26.90111 -24.49771 -23.70317 -22.42169 -21.56211 -20.55126 -20.25528 -18.62008 -17.52900 -16.58694 -16.21816 -15.64359 -15.23092 -14.81205 -14.54716 -14.29812 -14.01125 -13.73387 -13.44905 -13.38798 -13.08524 -13.02014 -12.85191 -12.45837 -12.40743 -12.20419 -12.09765 -11.84809 -11.77882 -11.65282 -11.44812 -11.12435 -11.03104 -10.99445 -10.79380 -10.63736 -10.54559 -10.14180 -9.69705 -9.55532 -9.24283 -8.96702 -8.73465 -7.98638 -7.76302 -7.58572 -6.18407 -4.36288 1.10707 1.77342 2.30080 2.40903 3.21842 3.27839 3.29479 3.29817 3.53888 3.93807 4.26665 4.30964 4.40016 4.60998 4.80140 4.85796 5.11889 5.17383 5.25831 5.33505 5.41945 5.56226 5.64745 5.69153 5.80576 5.82323 5.83457 5.91086 5.93975 6.01364 6.16089 6.24032 6.33491 6.36237 6.38600 6.48171 6.59977 6.75518 6.81013 6.92156 7.10910 7.33698 7.50303 7.68502 7.78713 7.89537 8.04043 8.11288 8.26406 8.46391 8.77194 9.35411 10.79392 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010226 B = 0.004902 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.478841 B = 5710.966256 C = 5958.162242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.145 4.145 4 C 0.208 3.792 5 C -0.244 4.244 6 C 0.007 3.993 7 C -0.138 4.138 8 C 0.281 3.719 9 N -0.433 5.433 10 C 0.409 3.591 11 O -0.262 6.262 12 C 0.242 3.758 13 H 0.058 0.942 14 C -0.537 4.537 15 H 0.070 0.930 16 C 0.082 3.918 17 N -0.841 5.841 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.040 4.040 23 C -0.070 4.070 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.123 4.123 28 N -0.528 5.528 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.266 0.734 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 11.952 -4.495 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.203 4.203 4 C 0.067 3.933 5 C -0.265 4.265 6 C -0.021 4.021 7 C -0.145 4.145 8 C -0.034 4.034 9 N -0.110 5.110 10 C 0.227 3.773 11 O -0.163 6.163 12 C 0.188 3.812 13 H 0.076 0.924 14 C -0.573 4.573 15 H 0.088 0.912 16 C -0.126 4.126 17 N -0.475 5.475 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.041 4.041 23 C -0.089 4.089 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.156 4.156 27 C -0.141 4.141 28 N -0.253 5.253 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.076 0.924 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.998 10.207 -3.510 10.977 hybrid contribution -1.196 -0.246 0.186 1.235 sum 0.802 9.961 -3.324 10.531 Atomic orbital electron populations 1.21780 0.93447 1.02920 1.01693 1.20110 0.96377 0.95124 0.95364 1.21915 1.01341 0.94946 1.02056 1.21099 0.89295 0.88545 0.94350 1.21487 1.10034 1.01693 0.93247 1.21274 0.91133 0.90894 0.98767 1.15972 1.15908 0.93725 0.88923 1.25040 0.92972 0.93027 0.92398 1.81105 1.10601 1.07526 1.11742 1.19947 0.84313 0.86096 0.86984 1.86543 1.75807 1.14964 1.39011 1.19029 0.93428 0.88960 0.79759 0.92380 1.21186 0.97238 1.27006 1.11883 0.91225 1.25050 0.97447 0.95586 0.94544 1.69947 1.37340 1.32596 1.07617 0.86661 0.83762 0.79733 0.78016 1.19870 1.21074 1.20015 1.20030 0.93132 0.98165 0.92732 1.21476 0.92948 0.93351 1.01084 1.21129 0.99340 0.99022 0.96368 1.20857 1.01701 1.00563 0.93314 1.20790 0.99566 0.97559 0.97714 1.20753 0.98010 0.98721 0.96622 1.67419 1.18017 1.09041 1.30774 0.92160 0.92550 0.91695 0.88991 0.92117 0.92096 0.92344 0.84510 0.84350 0.92434 0.83627 0.87670 0.87815 0.87491 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.19 16 2 C -0.05 -0.59 3.23 -91.77 -0.30 -0.88 16 3 C -0.14 -1.24 8.61 37.16 0.32 -0.92 16 4 C 0.21 3.08 5.79 -82.53 -0.48 2.60 16 5 C -0.24 -3.07 9.15 -39.50 -0.36 -3.43 16 6 C 0.01 0.09 9.90 -38.88 -0.39 -0.29 16 7 C -0.14 -2.53 5.77 -106.53 -0.61 -3.14 16 8 C 0.28 5.66 14.91 -22.47 -0.34 5.32 16 9 N -0.43 -9.35 18.54 41.84 0.78 -8.57 16 10 C 0.41 8.57 7.46 -16.61 -0.12 8.44 16 11 O -0.26 -6.29 7.03 -18.12 -0.13 -6.42 16 12 C 0.24 5.78 2.33 -29.03 -0.07 5.71 16 13 H 0.06 1.34 6.93 -51.93 -0.36 0.98 16 14 C -0.54 -13.85 8.85 -34.44 -0.30 -14.15 16 15 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 16 C 0.08 2.15 5.22 -17.82 -0.09 2.06 16 17 N -0.84 -22.63 9.55 55.43 0.53 -22.10 16 18 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.04 -0.93 4.82 -104.62 -0.50 -1.43 16 23 C -0.07 -1.64 8.08 -39.58 -0.32 -1.96 16 24 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 25 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 26 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 27 C -0.12 -2.52 9.70 -39.58 -0.38 -2.91 16 28 N -0.53 -10.04 8.54 -9.20 -0.08 -10.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.45 6.47 -51.93 -0.34 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.14 1.26 6.27 -52.48 -0.33 0.93 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.15 3.77 5.99 -52.49 -0.31 3.46 16 40 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -29.27 368.61 -8.71 -37.98 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.54 Total: 3.53 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -4.80 Total: -15.52 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.23 Total: -40.79 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.13 Total: -6.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.27 -8.71 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226353673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.286 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds