Wall clock time and date at job start Tue Mar 31 2020 13:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 C 1.50692 * 109.47316 * 119.99792 * 2 1 3 5 5 C 1.38325 * 119.40858 * 274.73647 * 4 2 1 6 6 C 1.38373 * 119.46142 * 179.72960 * 5 4 2 7 7 C 1.39987 * 118.34040 * 0.52634 * 6 5 4 8 8 C 1.43205 * 120.59750 * 179.75271 * 7 6 5 9 9 N 6.80282 * 109.55283 * 121.10189 * 2 1 3 10 10 C 1.40319 * 118.80482 * 359.73721 * 7 6 5 11 11 O 1.35476 * 119.80351 * 179.97438 * 10 7 6 12 12 C 1.42898 * 117.00021 * 180.02562 * 11 10 7 13 13 H 1.08993 * 109.47058 * 30.00065 * 12 11 10 14 14 C 1.50694 * 109.46955 * 269.99837 * 12 11 10 15 15 H 1.07995 * 120.00050 * 125.46581 * 14 12 11 16 16 C 1.37885 * 120.00177 * 305.45716 * 14 12 11 17 17 N 1.31510 * 119.99484 * 8.46319 * 16 14 12 18 18 Si 1.86799 * 119.99910 * 188.46181 * 16 14 12 19 19 H 1.48494 * 109.47121 * 60.00232 * 18 16 14 20 20 H 1.48508 * 109.46704 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47108 * 299.99926 * 18 16 14 22 22 C 1.50706 * 109.46665 * 149.99810 * 12 11 10 23 23 C 1.38235 * 120.00196 * 29.27616 * 22 12 11 24 24 C 1.38234 * 119.99746 * 179.81025 * 23 22 12 25 25 C 1.38241 * 119.99964 * 0.39264 * 24 23 22 26 26 C 1.38234 * 120.00083 * 359.86082 * 25 24 23 27 27 C 1.38235 * 120.00102 * 359.95284 * 26 25 24 28 28 N 1.31914 * 119.40752 * 95.00609 * 4 2 1 29 29 H 1.09003 * 109.47165 * 60.00150 * 1 2 3 30 30 H 1.08991 * 109.47351 * 299.99748 * 1 2 3 31 31 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47572 * 240.00175 * 2 1 3 33 33 H 1.09003 * 109.47201 * 300.00443 * 3 2 1 34 34 H 1.09000 * 109.46860 * 59.99739 * 3 2 1 35 35 H 1.08994 * 109.47228 * 179.97438 * 3 2 1 36 36 H 1.08004 * 120.26880 * 359.97438 * 5 4 2 37 37 H 1.07996 * 120.83016 * 180.24098 * 6 5 4 38 38 H 0.97008 * 119.99818 * 179.97438 * 17 16 14 39 39 H 1.07998 * 119.99952 * 359.97438 * 23 22 12 40 40 H 1.07995 * 119.99960 * 180.23086 * 24 23 22 41 41 H 1.07998 * 119.99718 * 179.83427 * 25 24 23 42 42 H 1.08002 * 120.00000 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00419 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 2.1649 -0.0070 2.4141 6 6 2.6208 -0.6595 3.5460 7 6 2.9440 -2.0179 3.4452 8 6 3.4251 -2.7392 4.5849 9 7 3.8067 -3.3114 5.4890 10 6 2.7876 -2.6600 2.2074 11 8 3.0948 -3.9739 2.0869 12 6 2.9136 -4.5671 0.7995 13 1 3.0661 -3.8132 0.0274 14 6 1.5156 -5.1194 0.6933 15 1 0.8765 -4.8179 -0.1234 16 6 1.0523 -6.0099 1.6387 17 7 1.7623 -6.2500 2.7193 18 14 -0.5837 -6.8749 1.3844 19 1 -0.5320 -7.6740 0.1339 20 1 -0.8527 -7.7734 2.5359 21 1 -1.6672 -5.8645 1.2819 22 6 3.9099 -5.6829 0.6160 23 6 4.3685 -6.3875 1.7132 24 6 5.2794 -7.4136 1.5443 25 6 5.7378 -7.7296 0.2790 26 6 5.2831 -7.0215 -0.8177 27 6 4.3693 -5.9980 -0.6493 28 7 2.3428 -1.9904 1.1580 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6765 1.9565 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.9110 1.0419 2.4556 37 1 2.7290 -0.1329 4.4826 38 1 1.4362 -6.8762 3.3846 39 1 4.0132 -6.1382 2.7021 40 1 5.6349 -7.9665 2.4011 41 1 6.4514 -8.5294 0.1473 42 1 5.6415 -7.2681 -1.8062 43 1 4.0137 -5.4450 -1.5061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226353673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:12 Heat of formation + Delta-G solvation = 33.127129 kcal Electronic energy + Delta-G solvation = -26866.474081 eV Core-core repulsion = 23262.417818 eV Total energy + Delta-G solvation = -3604.056263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64141 -40.06914 -38.65150 -37.64891 -36.01735 -34.82835 -33.36248 -32.52630 -31.49523 -30.62662 -28.74485 -27.88147 -25.70438 -25.39613 -23.88079 -23.11330 -21.91446 -21.61460 -20.02877 -19.20736 -18.07101 -17.69058 -17.15754 -16.88295 -16.18894 -16.08644 -15.77053 -15.34839 -14.99849 -14.94503 -14.82049 -14.51533 -14.29525 -14.16023 -14.02409 -13.75805 -13.70875 -13.52671 -13.41314 -13.25952 -12.92764 -12.86076 -12.67135 -12.42338 -12.28609 -12.15930 -11.92142 -11.78411 -11.68681 -11.40624 -11.12787 -10.72610 -10.65040 -10.30992 -9.58023 -9.32906 -9.12570 -8.12864 -6.37360 -0.20088 0.52062 0.69173 0.81173 1.34091 1.35841 1.42236 1.71620 2.05541 2.33935 2.47287 2.92349 3.03157 3.12080 3.20635 3.40461 3.84162 4.10849 4.24707 4.27911 4.28661 4.31335 4.36633 4.40879 4.50801 4.61675 4.77785 4.82094 4.93711 4.94693 5.01361 5.04029 5.07426 5.08365 5.18539 5.32650 5.34759 5.46741 5.49194 5.55644 5.59699 5.69488 5.76136 5.90474 5.99630 6.14304 6.38542 6.48529 6.57081 6.92567 7.11616 7.37194 8.80912 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010226 B = 0.004902 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.478841 B = 5710.966256 C = 5958.162242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C -0.138 4.138 4 C 0.196 3.804 5 C -0.219 4.219 6 C 0.023 3.977 7 C -0.161 4.161 8 C 0.292 3.708 9 N -0.472 5.472 10 C 0.374 3.626 11 O -0.290 6.290 12 C 0.249 3.751 13 H 0.051 0.949 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.043 3.957 17 N -0.861 5.861 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.067 4.067 23 C -0.093 4.093 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.129 4.129 27 C -0.134 4.134 28 N -0.556 5.556 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.187 0.813 37 H 0.181 0.819 38 H 0.258 0.742 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.144 0.856 42 H 0.149 0.851 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 14.104 -5.866 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C -0.196 4.196 4 C 0.057 3.943 5 C -0.238 4.238 6 C -0.004 4.004 7 C -0.169 4.169 8 C -0.022 4.022 9 N -0.150 5.150 10 C 0.192 3.808 11 O -0.193 6.193 12 C 0.195 3.805 13 H 0.069 0.931 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.163 4.163 17 N -0.496 5.496 18 Si 0.767 3.233 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.068 4.068 23 C -0.112 4.112 24 C -0.168 4.168 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.152 4.152 28 N -0.281 5.281 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.204 0.796 37 H 0.198 0.802 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.052 12.394 -4.891 13.481 hybrid contribution -1.188 -0.737 0.511 1.488 sum 0.864 11.657 -4.380 12.483 Atomic orbital electron populations 1.21766 0.92756 1.01278 1.03656 1.20244 0.96791 0.96806 0.93163 1.21899 1.01246 0.92380 1.04033 1.21887 0.88244 0.87433 0.96754 1.22018 1.06854 1.03525 0.91430 1.21786 0.88979 0.88727 1.00948 1.16253 1.17692 0.95603 0.87307 1.25463 0.92067 0.92395 0.92292 1.81081 1.12256 1.08404 1.13243 1.20268 0.86312 0.85590 0.88604 1.86456 1.77170 1.17147 1.38532 1.18817 0.92860 0.88963 0.79821 0.93128 1.21336 0.98445 1.27289 1.11447 0.92304 1.25634 0.99937 0.96297 0.94433 1.70133 1.38355 1.32999 1.08064 0.85881 0.80884 0.78799 0.77743 1.19479 1.21230 1.19682 1.20170 0.94207 0.98489 0.93939 1.21233 0.94963 0.95326 0.99688 1.21355 0.98812 0.98351 0.98309 1.21289 1.01325 1.00847 0.92088 1.21256 0.97869 0.95877 0.99699 1.21025 0.98588 0.99699 0.95881 1.67391 1.18844 1.11222 1.30647 0.89775 0.91027 0.95105 0.90649 0.90291 0.90028 0.92491 0.79567 0.80186 0.93296 0.87199 0.86250 0.83785 0.83372 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.05 -1.09 3.23 -11.54 -0.04 -1.12 16 3 C -0.14 -1.81 8.61 71.98 0.62 -1.19 16 4 C 0.20 5.59 5.79 42.56 0.25 5.84 16 5 C -0.22 -4.75 9.15 22.32 0.20 -4.55 16 6 C 0.02 0.57 9.90 22.73 0.23 0.79 16 7 C -0.16 -6.03 5.77 -21.10 -0.12 -6.15 16 8 C 0.29 12.26 14.91 88.33 1.32 13.57 16 9 N -0.47 -21.38 18.54 19.01 0.35 -21.03 16 10 C 0.37 16.45 7.46 85.14 0.64 17.09 16 11 O -0.29 -14.95 7.03 -87.76 -0.62 -15.57 16 12 C 0.25 12.69 2.33 29.10 0.07 12.75 16 13 H 0.05 2.52 6.93 -2.39 -0.02 2.50 16 14 C -0.55 -29.83 8.85 25.60 0.23 -29.60 16 15 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 16 C 0.04 2.33 5.22 84.66 0.44 2.77 16 17 N -0.86 -49.12 9.55 21.45 0.20 -48.92 16 18 Si 0.94 43.92 29.55 68.60 2.03 45.94 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 C -0.07 -3.28 4.82 -19.86 -0.10 -3.37 16 23 C -0.09 -4.61 8.08 22.27 0.18 -4.43 16 24 C -0.15 -6.20 10.05 22.27 0.22 -5.98 16 25 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 26 C -0.13 -4.48 10.05 22.27 0.22 -4.25 16 27 C -0.13 -5.51 9.70 22.27 0.22 -5.29 16 28 N -0.56 -21.88 8.54 -296.02 -2.53 -24.41 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.74 6.47 -2.39 -0.02 0.73 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.19 2.25 6.27 -2.91 -0.02 2.23 16 37 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 39 H 0.11 6.18 5.99 -2.91 -0.02 6.16 16 40 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 43 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -70.75 368.61 5.92 -64.83 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.03 Total: 18.90 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 5.46 Total: -19.76 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -1.97 Total: -94.35 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.62 Total: -15.57 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.75 5.92 -64.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226353673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.960 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds