Wall clock time and date at job start Tue Mar 31 2020 13:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.47044 * 2 1 4 4 C 1.38322 * 119.40295 * 125.00082 * 3 2 1 5 5 C 1.38372 * 119.45418 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.82496 * 179.97438 * 5 4 3 7 7 C 1.39987 * 118.34610 * 0.25314 * 5 4 3 8 8 C 1.43196 * 120.59889 * 179.75048 * 7 5 4 9 9 N 6.80283 * 108.76363 * 359.17796 * 2 1 3 10 10 C 1.40317 * 118.79915 * 359.52983 * 7 5 4 11 11 O 1.35475 * 119.80029 * 180.20658 * 10 7 5 12 12 C 1.42894 * 117.00314 * 180.27395 * 11 10 7 13 13 H 1.09004 * 109.47346 * 329.99297 * 12 11 10 14 14 C 1.50695 * 109.47313 * 89.99882 * 12 11 10 15 15 H 1.08005 * 119.99984 * 240.00246 * 14 12 11 16 16 C 1.37878 * 120.00418 * 60.00253 * 14 12 11 17 17 N 1.31515 * 119.99714 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00153 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47599 * 59.99847 * 18 16 14 20 20 H 1.48500 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47082 * 299.99584 * 18 16 14 22 22 C 1.50706 * 109.47401 * 209.99660 * 12 11 10 23 23 C 1.38238 * 119.99799 * 324.72820 * 22 12 11 24 24 C 1.38234 * 119.99487 * 179.80715 * 23 22 12 25 25 C 1.38235 * 120.00309 * 0.39635 * 24 23 22 26 26 C 1.38232 * 119.99668 * 359.85645 * 25 24 23 27 27 C 1.38230 * 120.00517 * 359.95649 * 26 25 24 28 28 N 1.31907 * 119.40269 * 305.02506 * 3 2 1 29 29 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47073 * 299.99632 * 1 2 3 31 31 H 1.09005 * 109.47766 * 59.99963 * 1 2 3 32 32 H 1.09000 * 109.47073 * 240.00368 * 2 1 3 33 33 H 1.08994 * 109.47352 * 119.99804 * 2 1 3 34 34 H 1.07996 * 120.27289 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.47152 * 90.00055 * 6 5 4 36 36 H 1.09001 * 109.46980 * 330.00155 * 6 5 4 37 37 H 1.09004 * 109.47113 * 210.00136 * 6 5 4 38 38 H 0.96995 * 120.00136 * 179.97438 * 17 16 14 39 39 H 1.07993 * 119.99860 * 359.97438 * 23 22 12 40 40 H 1.07998 * 119.99444 * 180.22817 * 24 23 22 41 41 H 1.08000 * 119.99666 * 179.83195 * 25 24 23 42 42 H 1.08003 * 119.99429 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.00085 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9103 1.8308 0.9871 5 6 3.3718 3.1353 0.9884 6 6 4.3286 3.6148 2.0494 7 6 2.9231 4.0000 -0.0168 8 6 3.3656 5.3613 -0.0583 9 7 3.7182 6.4406 -0.0924 10 6 2.0358 3.5075 -0.9858 11 8 1.5920 4.3256 -1.9703 12 6 0.6858 3.7637 -2.9215 13 1 0.8916 2.6993 -3.0347 14 6 -0.7295 3.9534 -2.4398 15 1 -1.3599 3.0941 -2.2644 16 6 -1.2196 5.2237 -2.2231 17 7 -0.4518 6.2700 -2.4362 18 14 -2.9737 5.4587 -1.6253 19 1 -3.1457 4.7795 -0.3159 20 1 -3.2540 6.9088 -1.4708 21 1 -3.9158 4.8745 -2.6135 22 6 0.8608 4.4531 -4.2502 23 6 1.1611 5.8017 -4.2948 24 6 1.3256 6.4332 -5.5134 25 6 1.1816 5.7179 -6.6875 26 6 0.8760 4.3705 -6.6429 27 6 0.7154 3.7381 -5.4243 28 7 1.6263 2.2513 -0.9410 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.2324 1.1386 1.7510 35 1 5.3532 3.4502 1.7160 36 1 4.1538 3.0625 2.9727 37 1 4.1707 4.6787 2.2270 38 1 -0.7967 7.1637 -2.2841 39 1 1.2700 6.3613 -3.3776 40 1 1.5639 7.4860 -5.5482 41 1 1.3074 6.2119 -7.6396 42 1 0.7631 3.8118 -7.5603 43 1 0.4771 2.6854 -5.3895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233554897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:28 Heat of formation + Delta-G solvation = 48.268388 kcal Electronic energy + Delta-G solvation = -26983.607093 eV Core-core repulsion = 23380.207405 eV Total energy + Delta-G solvation = -3603.399689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33756 -38.42499 -37.00639 -36.18586 -34.19524 -33.36447 -32.27939 -30.70549 -29.76141 -29.35494 -27.98865 -26.90836 -24.44164 -23.53916 -22.25418 -21.37886 -20.87821 -20.12376 -18.41470 -17.60637 -16.63662 -16.14671 -15.66139 -15.15272 -14.71906 -14.44283 -14.21647 -13.87607 -13.75680 -13.52596 -13.40229 -13.06410 -12.90389 -12.75556 -12.54326 -12.39069 -12.35092 -12.08324 -12.01380 -11.83484 -11.66646 -11.56181 -11.22955 -11.09677 -11.02019 -10.81782 -10.62158 -10.48886 -10.11565 -9.60502 -9.35033 -9.09201 -8.98834 -8.84572 -7.89889 -7.72712 -7.54124 -6.09705 -4.43261 1.06441 1.71609 2.39109 2.55569 3.20170 3.25592 3.26020 3.27584 3.50396 3.90068 4.23395 4.29887 4.37078 4.62424 4.77560 4.93401 5.06090 5.25517 5.30576 5.37640 5.43743 5.53105 5.54760 5.73145 5.77302 5.78972 5.90507 5.98292 5.99487 6.05473 6.14512 6.28660 6.31684 6.40043 6.54593 6.58788 6.67929 6.78555 6.84631 7.01866 7.23661 7.43338 7.54929 7.74015 7.88772 7.94651 8.07810 8.20755 8.26158 8.45127 8.74171 9.31896 10.73907 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.005210 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.733534 B = 5372.911012 C = 5781.158894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.204 3.796 4 C -0.243 4.243 5 C 0.038 3.962 6 C -0.119 4.119 7 C -0.142 4.142 8 C 0.282 3.718 9 N -0.434 5.434 10 C 0.412 3.588 11 O -0.272 6.272 12 C 0.241 3.759 13 H 0.058 0.942 14 C -0.527 4.527 15 H 0.070 0.930 16 C 0.079 3.921 17 N -0.847 5.847 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.049 4.049 23 C -0.048 4.048 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.122 4.122 28 N -0.529 5.529 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.267 0.733 39 H 0.162 0.838 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -10.019 4.529 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.064 3.936 4 C -0.264 4.264 5 C 0.029 3.971 6 C -0.176 4.176 7 C -0.150 4.150 8 C -0.033 4.033 9 N -0.111 5.111 10 C 0.229 3.771 11 O -0.175 6.175 12 C 0.188 3.812 13 H 0.076 0.924 14 C -0.563 4.563 15 H 0.088 0.912 16 C -0.128 4.128 17 N -0.482 5.482 18 Si 0.723 3.277 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.050 4.050 23 C -0.067 4.067 24 C -0.170 4.170 25 C -0.161 4.161 26 C -0.167 4.167 27 C -0.140 4.140 28 N -0.254 5.254 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.179 0.821 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.772 -8.087 3.727 10.611 hybrid contribution -0.985 0.104 0.698 1.212 sum 4.787 -7.983 4.425 10.307 Atomic orbital electron populations 1.21677 0.93779 1.01272 1.03558 1.20533 0.97356 0.90388 1.02834 1.21165 0.89177 0.95195 0.88050 1.21361 1.05269 0.96090 1.03699 1.19989 0.92711 0.92288 0.92139 1.20878 0.98021 1.02136 0.96566 1.15860 1.08719 0.88526 1.01853 1.24991 0.92859 0.92146 0.93264 1.81116 1.10473 1.11102 1.08375 1.19908 0.84531 0.86151 0.86527 1.86535 1.58516 1.37350 1.35060 1.19049 0.87545 0.92601 0.81986 0.92373 1.21271 0.96407 0.92968 1.45639 0.91206 1.25107 0.97929 0.95928 0.93824 1.69788 1.35553 0.98686 1.44164 0.86577 0.84234 0.77322 0.79531 1.19942 1.21000 1.19889 1.19873 0.96527 0.94844 0.93736 1.21887 0.92114 0.94230 0.98488 1.21146 1.03439 0.99052 0.93338 1.20850 1.03249 0.94637 0.97319 1.20711 1.04301 0.94908 0.96742 1.20745 1.02007 0.99126 0.92158 1.67372 1.27940 1.03085 1.27052 0.92778 0.92899 0.90701 0.89853 0.90495 0.84698 0.90035 0.90343 0.91166 0.92278 0.82082 0.87934 0.88112 0.87774 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.77 37.15 0.36 -1.41 16 2 C -0.07 -0.82 6.33 -27.88 -0.18 -1.00 16 3 C 0.20 3.01 6.18 -82.52 -0.51 2.50 16 4 C -0.24 -3.11 9.39 -39.50 -0.37 -3.48 16 5 C 0.04 0.54 5.95 -103.92 -0.62 -0.07 16 6 C -0.12 -1.28 9.68 36.01 0.35 -0.93 16 7 C -0.14 -2.63 5.76 -106.54 -0.61 -3.24 16 8 C 0.28 5.65 13.51 -22.48 -0.30 5.34 16 9 N -0.43 -9.22 18.54 41.84 0.78 -8.45 16 10 C 0.41 8.59 7.46 -16.61 -0.12 8.47 16 11 O -0.27 -6.56 7.75 -18.12 -0.14 -6.70 16 12 C 0.24 5.78 2.35 -29.03 -0.07 5.71 16 13 H 0.06 1.35 6.89 -51.93 -0.36 0.99 16 14 C -0.53 -13.52 8.89 -34.44 -0.31 -13.83 16 15 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 16 C 0.08 2.05 5.24 -17.82 -0.09 1.96 16 17 N -0.85 -22.49 8.50 55.43 0.47 -22.02 16 18 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.05 -1.16 4.80 -104.62 -0.50 -1.66 16 23 C -0.05 -1.15 7.46 -39.58 -0.30 -1.45 16 24 C -0.15 -3.21 10.05 -39.58 -0.40 -3.61 16 25 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 26 C -0.15 -2.84 10.05 -39.59 -0.40 -3.24 16 27 C -0.12 -2.57 9.68 -39.59 -0.38 -2.95 16 28 N -0.53 -9.96 8.14 -9.20 -0.07 -10.04 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 34 H 0.14 1.24 7.93 -52.49 -0.42 0.82 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.83 7.18 -51.93 -0.37 0.46 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 39 H 0.16 4.24 5.50 -52.49 -0.29 3.95 16 40 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -28.97 368.71 -8.88 -37.85 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.60 Total: 4.23 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -4.85 Total: -16.03 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.17 Total: -40.50 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.14 Total: -6.70 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.97 -8.88 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233554897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.123 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds