Wall clock time and date at job start Tue Mar 31 2020 13:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.47044 * 2 1 4 4 C 1.38322 * 119.40295 * 125.00082 * 3 2 1 5 5 C 1.38372 * 119.45418 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.82496 * 179.97438 * 5 4 3 7 7 C 1.39987 * 118.34610 * 0.25314 * 5 4 3 8 8 C 1.43196 * 120.59889 * 179.75048 * 7 5 4 9 9 N 6.80283 * 108.76363 * 359.17796 * 2 1 3 10 10 C 1.40317 * 118.79915 * 359.52983 * 7 5 4 11 11 O 1.35475 * 119.80029 * 180.20658 * 10 7 5 12 12 C 1.42894 * 117.00314 * 180.27395 * 11 10 7 13 13 H 1.09004 * 109.47346 * 329.99297 * 12 11 10 14 14 C 1.50695 * 109.47313 * 89.99882 * 12 11 10 15 15 H 1.08005 * 119.99984 * 240.00246 * 14 12 11 16 16 C 1.37878 * 120.00418 * 60.00253 * 14 12 11 17 17 N 1.31515 * 119.99714 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00153 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47599 * 59.99847 * 18 16 14 20 20 H 1.48500 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47082 * 299.99584 * 18 16 14 22 22 C 1.50706 * 109.47401 * 209.99660 * 12 11 10 23 23 C 1.38238 * 119.99799 * 324.72820 * 22 12 11 24 24 C 1.38234 * 119.99487 * 179.80715 * 23 22 12 25 25 C 1.38235 * 120.00309 * 0.39635 * 24 23 22 26 26 C 1.38232 * 119.99668 * 359.85645 * 25 24 23 27 27 C 1.38230 * 120.00517 * 359.95649 * 26 25 24 28 28 N 1.31907 * 119.40269 * 305.02506 * 3 2 1 29 29 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47073 * 299.99632 * 1 2 3 31 31 H 1.09005 * 109.47766 * 59.99963 * 1 2 3 32 32 H 1.09000 * 109.47073 * 240.00368 * 2 1 3 33 33 H 1.08994 * 109.47352 * 119.99804 * 2 1 3 34 34 H 1.07996 * 120.27289 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.47152 * 90.00055 * 6 5 4 36 36 H 1.09001 * 109.46980 * 330.00155 * 6 5 4 37 37 H 1.09004 * 109.47113 * 210.00136 * 6 5 4 38 38 H 0.96995 * 120.00136 * 179.97438 * 17 16 14 39 39 H 1.07993 * 119.99860 * 359.97438 * 23 22 12 40 40 H 1.07998 * 119.99444 * 180.22817 * 24 23 22 41 41 H 1.08000 * 119.99666 * 179.83195 * 25 24 23 42 42 H 1.08003 * 119.99429 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.00085 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9103 1.8308 0.9871 5 6 3.3718 3.1353 0.9884 6 6 4.3286 3.6148 2.0494 7 6 2.9231 4.0000 -0.0168 8 6 3.3656 5.3613 -0.0583 9 7 3.7182 6.4406 -0.0924 10 6 2.0358 3.5075 -0.9858 11 8 1.5920 4.3256 -1.9703 12 6 0.6858 3.7637 -2.9215 13 1 0.8916 2.6993 -3.0347 14 6 -0.7295 3.9534 -2.4398 15 1 -1.3599 3.0941 -2.2644 16 6 -1.2196 5.2237 -2.2231 17 7 -0.4518 6.2700 -2.4362 18 14 -2.9737 5.4587 -1.6253 19 1 -3.1457 4.7795 -0.3159 20 1 -3.2540 6.9088 -1.4708 21 1 -3.9158 4.8745 -2.6135 22 6 0.8608 4.4531 -4.2502 23 6 1.1611 5.8017 -4.2948 24 6 1.3256 6.4332 -5.5134 25 6 1.1816 5.7179 -6.6875 26 6 0.8760 4.3705 -6.6429 27 6 0.7154 3.7381 -5.4243 28 7 1.6263 2.2513 -0.9410 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.2324 1.1386 1.7510 35 1 5.3532 3.4502 1.7160 36 1 4.1538 3.0625 2.9727 37 1 4.1707 4.6787 2.2270 38 1 -0.7967 7.1637 -2.2841 39 1 1.2700 6.3613 -3.3776 40 1 1.5639 7.4860 -5.5482 41 1 1.3074 6.2119 -7.6396 42 1 0.7631 3.8118 -7.5603 43 1 0.4771 2.6854 -5.3895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233554897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:27 Heat of formation + Delta-G solvation = 33.424534 kcal Electronic energy + Delta-G solvation = -26984.250771 eV Core-core repulsion = 23380.207405 eV Total energy + Delta-G solvation = -3604.043366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68106 -40.04012 -38.56268 -37.69865 -35.39598 -35.10021 -33.59922 -32.37079 -31.37723 -30.68001 -29.11786 -28.63348 -25.57058 -25.27053 -23.68938 -22.95829 -22.20596 -21.58882 -19.82184 -19.24498 -18.07925 -17.77233 -17.19014 -16.87631 -16.26925 -15.79157 -15.60226 -15.30039 -15.05963 -14.95600 -14.80780 -14.49701 -14.21826 -14.05488 -13.95714 -13.85919 -13.67328 -13.58910 -13.36668 -13.27895 -13.24072 -12.95200 -12.85400 -12.62683 -12.31389 -12.20218 -12.13942 -11.83303 -11.74363 -11.31860 -10.97909 -10.80254 -10.39033 -10.32348 -9.51625 -9.28552 -9.14385 -8.01037 -6.42459 -0.23029 0.47099 0.73712 0.91593 1.34469 1.34876 1.41978 1.69036 2.03082 2.32484 2.43196 2.91423 2.99961 3.13784 3.25836 3.48196 3.69135 4.02022 4.26428 4.28866 4.32217 4.36563 4.45578 4.50379 4.56189 4.62101 4.68459 4.75128 4.83693 4.91248 4.96137 5.05621 5.12327 5.14400 5.18150 5.28829 5.31061 5.38587 5.54368 5.57239 5.60132 5.70870 5.81067 5.96462 6.05373 6.25457 6.44334 6.50466 6.56440 6.91312 7.11264 7.35080 8.77478 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.005210 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.733534 B = 5372.911012 C = 5781.158894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.192 3.808 4 C -0.218 4.218 5 C 0.046 3.954 6 C -0.117 4.117 7 C -0.169 4.169 8 C 0.293 3.707 9 N -0.472 5.472 10 C 0.377 3.623 11 O -0.302 6.302 12 C 0.250 3.750 13 H 0.052 0.948 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.946 3.054 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.269 1.269 22 C -0.076 4.076 23 C -0.071 4.071 24 C -0.162 4.162 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.133 4.133 28 N -0.554 5.554 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.189 0.811 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.053 0.947 38 H 0.259 0.741 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -12.766 5.134 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C 0.053 3.947 4 C -0.238 4.238 5 C 0.037 3.963 6 C -0.173 4.173 7 C -0.176 4.176 8 C -0.021 4.021 9 N -0.149 5.149 10 C 0.195 3.805 11 O -0.206 6.206 12 C 0.197 3.803 13 H 0.070 0.930 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.771 3.229 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.077 4.077 23 C -0.090 4.090 24 C -0.181 4.181 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.151 4.151 28 N -0.280 5.280 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.207 0.793 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.511 -10.861 4.350 13.389 hybrid contribution -1.122 0.781 0.557 1.476 sum 5.389 -10.080 4.907 12.439 Atomic orbital electron populations 1.21641 0.94845 1.02332 1.01297 1.20708 0.96281 0.88295 1.05369 1.21997 0.89089 0.96237 0.87404 1.21924 1.02680 0.95911 1.03290 1.20488 0.92333 0.92247 0.91266 1.21003 0.97930 1.01550 0.96836 1.16169 1.09776 0.88392 1.03255 1.25408 0.91969 0.92525 0.92218 1.81085 1.12074 1.12034 1.09741 1.20199 0.86218 0.87154 0.86921 1.86437 1.59225 1.38666 1.36286 1.18826 0.86846 0.92234 0.82440 0.92973 1.21412 0.97566 0.92634 1.46002 0.92199 1.25712 1.00753 0.95878 0.94272 1.70030 1.36291 0.98405 1.45191 0.85807 0.81011 0.76942 0.79090 1.19834 1.21117 1.19350 1.20058 0.97939 0.95137 0.94554 1.21635 0.94342 0.94604 0.98464 1.21357 1.03485 0.99948 0.93286 1.21262 1.01360 0.94763 0.97994 1.21170 1.02151 0.95141 0.97372 1.21023 1.01946 0.99921 0.92230 1.67352 1.28831 1.02757 1.29040 0.90027 0.93570 0.94565 0.89071 0.86014 0.79347 0.88100 0.86590 0.92845 0.93087 0.85373 0.86684 0.84222 0.83750 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.77 71.98 0.70 -2.58 16 2 C -0.07 -1.33 6.33 29.85 0.19 -1.14 16 3 C 0.19 5.30 6.18 42.57 0.26 5.56 16 4 C -0.22 -4.74 9.39 22.32 0.21 -4.53 16 5 C 0.05 1.22 5.95 -19.41 -0.12 1.11 16 6 C -0.12 -2.15 9.68 71.24 0.69 -1.46 16 7 C -0.17 -6.40 5.76 -21.10 -0.12 -6.52 16 8 C 0.29 12.33 13.51 88.33 1.19 13.53 16 9 N -0.47 -21.23 18.54 19.00 0.35 -20.87 16 10 C 0.38 16.55 7.46 85.14 0.64 17.19 16 11 O -0.30 -15.63 7.75 -87.74 -0.68 -16.31 16 12 C 0.25 12.75 2.35 29.10 0.07 12.82 16 13 H 0.05 2.59 6.89 -2.39 -0.02 2.57 16 14 C -0.54 -29.26 8.89 25.60 0.23 -29.03 16 15 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 16 C 0.04 2.07 5.24 84.65 0.44 2.51 16 17 N -0.86 -48.72 8.50 21.45 0.18 -48.54 16 18 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.08 -3.77 4.80 -19.86 -0.10 -3.87 16 23 C -0.07 -3.60 7.46 22.27 0.17 -3.43 16 24 C -0.16 -6.97 10.05 22.27 0.22 -6.75 16 25 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 26 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 27 C -0.13 -5.62 9.68 22.27 0.22 -5.41 16 28 N -0.55 -21.38 8.14 -296.01 -2.41 -23.79 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.10 7.94 -2.38 -0.02 1.08 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.12 1.31 7.85 -2.39 -0.02 1.29 16 34 H 0.19 2.11 7.93 -2.91 -0.02 2.09 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.05 1.20 7.18 -2.38 -0.02 1.18 16 38 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.13 7.31 5.50 -2.91 -0.02 7.30 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -70.46 368.71 5.84 -64.62 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.03 Total: 20.65 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 5.34 Total: -21.62 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -1.87 Total: -93.20 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.68 Total: -16.31 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -70.46 5.84 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233554897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.045 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds