Wall clock time and date at job start Tue Mar 31 2020 13:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47189 * 2 1 4 4 C 1.38326 * 119.40348 * 124.99801 * 3 2 1 5 5 C 1.38374 * 119.45405 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.82405 * 179.97438 * 5 4 3 7 7 C 1.39984 * 118.34720 * 359.97438 * 5 4 3 8 8 C 1.43201 * 120.59997 * 179.97438 * 7 5 4 9 9 N 6.80284 * 108.86533 * 359.10230 * 2 1 3 10 10 C 1.40322 * 118.80214 * 0.02562 * 7 5 4 11 11 O 1.35473 * 119.80316 * 179.97438 * 10 7 5 12 12 C 1.42896 * 117.00177 * 179.97438 * 11 10 7 13 13 H 1.08999 * 109.46890 * 30.00230 * 12 11 10 14 14 C 1.50700 * 109.47399 * 270.00187 * 12 11 10 15 15 H 1.07999 * 119.99849 * 332.15253 * 14 12 11 16 16 C 1.37869 * 120.00243 * 152.14858 * 14 12 11 17 17 N 1.31516 * 119.99964 * 353.91944 * 16 14 12 18 18 Si 1.86801 * 120.00318 * 173.91688 * 16 14 12 19 19 H 1.48501 * 109.46810 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47281 * 120.00093 * 18 16 14 21 21 H 1.48494 * 109.47353 * 240.00334 * 18 16 14 22 22 C 1.50699 * 109.47208 * 150.00122 * 12 11 10 23 23 C 1.38235 * 119.99915 * 38.49279 * 22 12 11 24 24 C 1.38238 * 119.99993 * 179.78930 * 23 22 12 25 25 C 1.38237 * 119.99938 * 0.44243 * 24 23 22 26 26 C 1.38227 * 119.99865 * 359.81106 * 25 24 23 27 27 C 1.38229 * 120.00235 * 218.76975 * 22 12 11 28 28 N 1.31909 * 119.40198 * 305.25360 * 3 2 1 29 29 H 1.09002 * 109.47039 * 59.99976 * 1 2 3 30 30 H 1.08995 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00254 * 1 2 3 32 32 H 1.08997 * 109.47450 * 239.99746 * 2 1 3 33 33 H 1.09002 * 109.47039 * 120.00024 * 2 1 3 34 34 H 1.08000 * 120.27083 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.46689 * 270.02251 * 6 5 4 36 36 H 1.09002 * 109.47346 * 30.02057 * 6 5 4 37 37 H 1.09002 * 109.47101 * 150.02052 * 6 5 4 38 38 H 0.96993 * 119.99869 * 4.99433 * 17 16 14 39 39 H 1.08002 * 120.00378 * 0.02562 * 23 22 12 40 40 H 1.08005 * 119.99635 * 180.27969 * 24 23 22 41 41 H 1.07994 * 119.99511 * 179.83376 * 25 24 23 42 42 H 1.07996 * 120.00022 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.00230 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9104 1.8307 0.9872 5 6 3.3719 3.1352 0.9885 6 6 4.3286 3.6148 2.0495 7 6 2.9279 3.9983 -0.0203 8 6 3.3743 5.3583 -0.0647 9 7 3.7296 6.4366 -0.1009 10 6 2.0367 3.5072 -0.9865 11 8 1.5938 4.3250 -1.9715 12 6 0.6887 3.7627 -2.9236 13 1 0.1009 2.9782 -2.4468 14 6 1.4681 3.1780 -4.0733 15 1 2.4349 3.5839 -4.3320 16 6 0.9471 2.1250 -4.7947 17 7 -0.1721 1.5528 -4.4078 18 14 1.8306 1.5109 -6.3217 19 1 3.0584 2.3169 -6.5408 20 1 2.2014 0.0846 -6.1391 21 1 0.9348 1.6428 -7.4986 22 6 -0.2328 4.8389 -3.4372 23 6 0.2536 6.1115 -3.6711 24 6 -0.5906 7.0976 -4.1464 25 6 -1.9233 6.8134 -4.3790 26 6 -2.4108 5.5422 -4.1402 27 6 -1.5656 4.5550 -3.6690 28 7 1.6228 2.2525 -0.9384 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2323 1.1385 1.7511 35 1 3.7652 4.0103 2.8947 36 1 4.9480 2.7823 2.3834 37 1 4.9645 4.3986 1.6379 38 1 -0.6690 1.9166 -3.6584 39 1 1.2941 6.3345 -3.4862 40 1 -0.2095 8.0907 -4.3334 41 1 -2.5834 7.5845 -4.7478 42 1 -3.4519 5.3201 -4.3223 43 1 -1.9466 3.5618 -3.4824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233554905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:33 Heat of formation + Delta-G solvation = 37.131662 kcal Electronic energy + Delta-G solvation = -26824.888161 eV Core-core repulsion = 23221.005548 eV Total energy + Delta-G solvation = -3603.882613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52943 -38.75003 -37.34116 -36.41482 -34.31473 -33.61100 -32.49386 -30.79032 -30.18476 -29.56576 -28.09294 -26.44542 -24.51543 -23.60988 -22.50878 -21.70493 -21.04912 -20.34494 -18.62308 -17.79409 -16.89328 -16.71302 -15.95109 -15.15791 -14.70575 -14.53549 -14.15811 -13.97962 -13.85578 -13.72699 -13.61495 -13.22371 -13.12238 -12.99858 -12.77350 -12.62761 -12.54163 -12.32101 -12.19026 -12.08954 -11.90667 -11.72939 -11.18310 -11.13644 -10.93876 -10.84896 -10.58992 -10.42664 -10.25380 -10.07010 -9.31386 -9.13890 -9.05257 -8.54394 -8.23352 -8.08488 -7.75740 -6.56075 -4.30545 0.90521 1.55406 2.08180 2.10194 2.98990 3.29850 3.35839 3.38266 3.52617 3.64057 4.11981 4.15811 4.36616 4.49733 4.58670 4.65038 5.06568 5.17832 5.22569 5.29305 5.41404 5.42880 5.52032 5.52752 5.56901 5.60805 5.71532 5.73778 5.91121 5.99829 6.05481 6.08848 6.23621 6.24642 6.29534 6.30397 6.58790 6.62745 6.63856 6.72808 6.83796 7.13115 7.17941 7.41569 7.66458 7.76498 7.79228 7.89987 8.24495 8.40896 8.62012 9.39488 10.79896 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.005595 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.013414 B = 5003.178757 C = 6337.072105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.209 3.791 4 C -0.235 4.235 5 C 0.038 3.962 6 C -0.119 4.119 7 C -0.143 4.143 8 C 0.282 3.718 9 N -0.435 5.435 10 C 0.410 3.590 11 O -0.299 6.299 12 C 0.227 3.773 13 H 0.073 0.927 14 C -0.600 4.600 15 H 0.059 0.941 16 C 0.039 3.961 17 N -0.887 5.887 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.043 4.043 23 C -0.106 4.106 24 C -0.128 4.128 25 C -0.145 4.145 26 C -0.123 4.123 27 C -0.113 4.113 28 N -0.512 5.512 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.272 0.728 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -1.596 10.407 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C 0.069 3.931 4 C -0.256 4.256 5 C 0.028 3.972 6 C -0.176 4.176 7 C -0.150 4.150 8 C -0.033 4.033 9 N -0.112 5.112 10 C 0.227 3.773 11 O -0.203 6.203 12 C 0.173 3.827 13 H 0.090 0.910 14 C -0.637 4.637 15 H 0.077 0.923 16 C -0.168 4.168 17 N -0.521 5.521 18 Si 0.900 3.100 19 H -0.214 1.214 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.044 4.044 23 C -0.124 4.124 24 C -0.146 4.146 25 C -0.163 4.163 26 C -0.141 4.141 27 C -0.131 4.131 28 N -0.236 5.236 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.488 -1.063 8.429 8.625 hybrid contribution 0.389 0.961 1.386 1.731 sum 1.877 -0.102 9.815 9.993 Atomic orbital electron populations 1.21657 0.93798 1.01702 1.02973 1.20568 0.97425 0.90143 1.03189 1.21265 0.89103 0.95438 0.87251 1.21470 1.04786 0.96031 1.03281 1.19997 0.92703 0.92215 0.92235 1.20885 0.97702 1.02266 0.96740 1.15823 1.08496 0.88639 1.02027 1.25061 0.92999 0.92161 0.93055 1.81140 1.09981 1.11346 1.08757 1.19697 0.85955 0.86611 0.85059 1.86162 1.60347 1.38195 1.35629 1.19342 0.86970 0.89782 0.86567 0.90978 1.22050 1.05945 1.19756 1.15960 0.92276 1.25755 0.96918 0.92720 1.01451 1.70754 1.15447 1.38956 1.26953 0.83501 0.75288 0.76131 0.75129 1.21388 1.21011 1.21049 1.20328 0.93114 0.94163 0.96789 1.20904 0.99478 0.92912 0.99145 1.21014 0.94018 0.98809 1.00764 1.20890 0.95596 0.96705 1.03128 1.20956 0.99114 0.93473 1.00559 1.20913 0.92796 0.99015 1.00411 1.67436 1.28293 1.02342 1.25506 0.90705 0.92473 0.93278 0.89222 0.90412 0.84314 0.89927 0.90126 0.91148 0.91545 0.86699 0.87135 0.87194 0.86909 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.77 37.16 0.36 -1.56 16 2 C -0.08 -0.97 6.33 -27.88 -0.18 -1.14 16 3 C 0.21 3.25 6.18 -82.52 -0.51 2.74 16 4 C -0.24 -2.98 9.39 -39.50 -0.37 -3.35 16 5 C 0.04 0.52 5.95 -103.92 -0.62 -0.10 16 6 C -0.12 -1.18 9.68 36.01 0.35 -0.83 16 7 C -0.14 -2.49 5.77 -106.53 -0.61 -3.10 16 8 C 0.28 5.16 13.51 -22.47 -0.30 4.85 16 9 N -0.44 -8.40 18.54 41.84 0.78 -7.62 16 10 C 0.41 8.42 7.46 -16.61 -0.12 8.29 16 11 O -0.30 -6.96 8.46 -18.11 -0.15 -7.11 16 12 C 0.23 5.54 1.94 -29.04 -0.06 5.49 16 13 H 0.07 1.83 5.18 -51.93 -0.27 1.56 16 14 C -0.60 -16.07 8.62 -34.44 -0.30 -16.37 16 15 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 16 C 0.04 1.04 5.45 -17.82 -0.10 0.94 16 17 N -0.89 -24.13 13.63 55.43 0.76 -23.38 16 18 Si 1.07 24.44 29.91 -169.99 -5.08 19.36 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.04 -1.00 4.96 -104.63 -0.52 -1.52 16 23 C -0.11 -2.30 9.36 -39.58 -0.37 -2.67 16 24 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 25 C -0.14 -2.54 10.05 -39.59 -0.40 -2.93 16 26 C -0.12 -2.27 10.05 -39.58 -0.40 -2.67 16 27 C -0.11 -2.42 9.52 -39.58 -0.38 -2.80 16 28 N -0.51 -10.12 8.13 -9.19 -0.07 -10.20 16 29 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.14 1.25 7.93 -52.49 -0.42 0.83 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.07 0.76 7.19 -51.93 -0.37 0.38 16 38 H 0.27 7.30 5.30 -40.82 -0.22 7.09 16 39 H 0.11 2.53 7.73 -52.49 -0.41 2.12 16 40 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.12 2.57 6.95 -52.49 -0.36 2.20 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -30.12 372.74 -8.53 -38.65 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.45 Total: 4.19 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -4.92 Total: -19.50 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 1.46 Total: -41.20 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.15 Total: -7.11 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.12 -8.53 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233554905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.782 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds