Wall clock time and date at job start Tue Mar 31 2020 13:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47189 * 2 1 4 4 C 1.38326 * 119.40348 * 124.99801 * 3 2 1 5 5 C 1.38374 * 119.45405 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.82405 * 179.97438 * 5 4 3 7 7 C 1.39984 * 118.34720 * 359.97438 * 5 4 3 8 8 C 1.43201 * 120.59997 * 179.97438 * 7 5 4 9 9 N 6.80284 * 108.86533 * 359.10230 * 2 1 3 10 10 C 1.40322 * 118.80214 * 0.02562 * 7 5 4 11 11 O 1.35473 * 119.80316 * 179.97438 * 10 7 5 12 12 C 1.42896 * 117.00177 * 179.97438 * 11 10 7 13 13 H 1.08999 * 109.46890 * 30.00230 * 12 11 10 14 14 C 1.50700 * 109.47399 * 270.00187 * 12 11 10 15 15 H 1.07999 * 119.99849 * 332.15253 * 14 12 11 16 16 C 1.37869 * 120.00243 * 152.14858 * 14 12 11 17 17 N 1.31516 * 119.99964 * 353.91944 * 16 14 12 18 18 Si 1.86801 * 120.00318 * 173.91688 * 16 14 12 19 19 H 1.48501 * 109.46810 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47281 * 120.00093 * 18 16 14 21 21 H 1.48494 * 109.47353 * 240.00334 * 18 16 14 22 22 C 1.50699 * 109.47208 * 150.00122 * 12 11 10 23 23 C 1.38235 * 119.99915 * 38.49279 * 22 12 11 24 24 C 1.38238 * 119.99993 * 179.78930 * 23 22 12 25 25 C 1.38237 * 119.99938 * 0.44243 * 24 23 22 26 26 C 1.38227 * 119.99865 * 359.81106 * 25 24 23 27 27 C 1.38229 * 120.00235 * 218.76975 * 22 12 11 28 28 N 1.31909 * 119.40198 * 305.25360 * 3 2 1 29 29 H 1.09002 * 109.47039 * 59.99976 * 1 2 3 30 30 H 1.08995 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00254 * 1 2 3 32 32 H 1.08997 * 109.47450 * 239.99746 * 2 1 3 33 33 H 1.09002 * 109.47039 * 120.00024 * 2 1 3 34 34 H 1.08000 * 120.27083 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.46689 * 270.02251 * 6 5 4 36 36 H 1.09002 * 109.47346 * 30.02057 * 6 5 4 37 37 H 1.09002 * 109.47101 * 150.02052 * 6 5 4 38 38 H 0.96993 * 119.99869 * 4.99433 * 17 16 14 39 39 H 1.08002 * 120.00378 * 0.02562 * 23 22 12 40 40 H 1.08005 * 119.99635 * 180.27969 * 24 23 22 41 41 H 1.07994 * 119.99511 * 179.83376 * 25 24 23 42 42 H 1.07996 * 120.00022 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.00230 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9104 1.8307 0.9872 5 6 3.3719 3.1352 0.9885 6 6 4.3286 3.6148 2.0495 7 6 2.9279 3.9983 -0.0203 8 6 3.3743 5.3583 -0.0647 9 7 3.7296 6.4366 -0.1009 10 6 2.0367 3.5072 -0.9865 11 8 1.5938 4.3250 -1.9715 12 6 0.6887 3.7627 -2.9236 13 1 0.1009 2.9782 -2.4468 14 6 1.4681 3.1780 -4.0733 15 1 2.4349 3.5839 -4.3320 16 6 0.9471 2.1250 -4.7947 17 7 -0.1721 1.5528 -4.4078 18 14 1.8306 1.5109 -6.3217 19 1 3.0584 2.3169 -6.5408 20 1 2.2014 0.0846 -6.1391 21 1 0.9348 1.6428 -7.4986 22 6 -0.2328 4.8389 -3.4372 23 6 0.2536 6.1115 -3.6711 24 6 -0.5906 7.0976 -4.1464 25 6 -1.9233 6.8134 -4.3790 26 6 -2.4108 5.5422 -4.1402 27 6 -1.5656 4.5550 -3.6690 28 7 1.6228 2.2525 -0.9384 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2323 1.1385 1.7511 35 1 3.7652 4.0103 2.8947 36 1 4.9480 2.7823 2.3834 37 1 4.9645 4.3986 1.6379 38 1 -0.6690 1.9166 -3.6584 39 1 1.2941 6.3345 -3.4862 40 1 -0.2095 8.0907 -4.3334 41 1 -2.5834 7.5845 -4.7478 42 1 -3.4519 5.3201 -4.3223 43 1 -1.9466 3.5618 -3.4824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233554905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:32 Heat of formation + Delta-G solvation = 20.978481 kcal Electronic energy + Delta-G solvation = -26825.588615 eV Core-core repulsion = 23221.005548 eV Total energy + Delta-G solvation = -3604.583068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88703 -40.31962 -38.87026 -37.84576 -35.58879 -35.35365 -33.82411 -32.41906 -31.75316 -30.86286 -29.13174 -28.23457 -25.68658 -25.43546 -23.95215 -23.22010 -22.42276 -21.74097 -20.01893 -19.48079 -18.54857 -18.12335 -17.42621 -16.68334 -16.09669 -15.98216 -15.73419 -15.50458 -15.33618 -15.05305 -14.99161 -14.64244 -14.39019 -14.30475 -14.13599 -14.11005 -13.87156 -13.71100 -13.55865 -13.48431 -13.29247 -12.91763 -12.75722 -12.52725 -12.42217 -12.25379 -12.06058 -12.01526 -11.84862 -11.73433 -10.94445 -10.56543 -10.50624 -10.40185 -9.80818 -9.56237 -9.35675 -8.65206 -6.40800 -0.38321 0.32515 0.50852 0.52219 1.46764 1.52461 1.54706 1.71506 1.89042 2.16301 2.48447 2.76865 2.82762 2.94228 3.16136 3.31949 3.58516 3.84930 4.02532 4.12495 4.13921 4.21919 4.26541 4.34047 4.37461 4.46677 4.55011 4.62721 4.71555 4.73657 4.81694 4.84768 4.92183 5.03719 5.10126 5.14053 5.17793 5.19318 5.22579 5.47219 5.52237 5.58711 5.60846 5.73519 5.83801 5.95258 6.16161 6.34838 6.47599 6.54762 6.99242 7.35925 8.69645 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.005595 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.013414 B = 5003.178757 C = 6337.072105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C 0.189 3.811 4 C -0.206 4.206 5 C 0.048 3.952 6 C -0.116 4.116 7 C -0.156 4.156 8 C 0.292 3.708 9 N -0.461 5.461 10 C 0.371 3.629 11 O -0.324 6.324 12 C 0.240 3.760 13 H 0.051 0.949 14 C -0.611 4.611 15 H 0.031 0.969 16 C 0.001 3.999 17 N -0.902 5.902 18 Si 1.108 2.892 19 H -0.285 1.285 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.074 4.074 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.119 4.119 27 C -0.133 4.133 28 N -0.550 5.550 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.194 0.806 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.058 0.942 38 H 0.265 0.735 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -2.006 12.054 12.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C 0.051 3.949 4 C -0.226 4.226 5 C 0.038 3.962 6 C -0.172 4.172 7 C -0.163 4.163 8 C -0.022 4.022 9 N -0.138 5.138 10 C 0.189 3.811 11 O -0.230 6.230 12 C 0.186 3.814 13 H 0.069 0.931 14 C -0.649 4.649 15 H 0.050 0.950 16 C -0.202 4.202 17 N -0.537 5.537 18 Si 0.931 3.069 19 H -0.211 1.211 20 H -0.197 1.197 21 H -0.201 1.201 22 C -0.075 4.075 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.136 4.136 27 C -0.151 4.151 28 N -0.274 5.274 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.211 0.789 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.165 0.835 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.635 -1.486 10.111 10.349 hybrid contribution 0.333 1.092 1.026 1.535 sum 1.968 -0.394 11.137 11.316 Atomic orbital electron populations 1.21596 0.94659 1.02411 1.01042 1.20714 0.96646 0.88754 1.04882 1.21953 0.89731 0.96040 0.87215 1.22003 1.01884 0.96149 1.02553 1.20536 0.92251 0.91905 0.91483 1.21027 0.97143 1.03382 0.95694 1.16085 1.08621 0.88805 1.02830 1.25276 0.92330 0.92324 0.92309 1.81117 1.11095 1.11925 1.09682 1.20033 0.87913 0.87328 0.85813 1.86081 1.60939 1.39221 1.36724 1.18977 0.86754 0.89891 0.85796 0.93128 1.22111 1.05271 1.20369 1.17116 0.95013 1.26853 0.97097 0.92878 1.03329 1.70812 1.16068 1.39467 1.27325 0.83040 0.74709 0.76362 0.72804 1.21113 1.19681 1.20055 1.20374 0.93932 0.94751 0.98399 1.20900 0.99332 0.93469 1.00927 1.21388 0.94335 0.99289 0.99145 1.21394 0.95485 0.97136 1.00924 1.21361 1.00251 0.93161 0.98858 1.20966 0.92819 0.99447 1.01898 1.67366 1.29621 1.02631 1.27816 0.95587 0.90366 0.92233 0.90708 0.85286 0.78851 0.87937 0.86414 0.92304 0.92390 0.88565 0.83937 0.82543 0.83545 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.77 71.98 0.70 -3.04 16 2 C -0.07 -1.75 6.33 29.85 0.19 -1.56 16 3 C 0.19 5.74 6.18 42.57 0.26 6.01 16 4 C -0.21 -4.54 9.39 22.32 0.21 -4.33 16 5 C 0.05 1.20 5.95 -19.41 -0.12 1.08 16 6 C -0.12 -1.87 9.68 71.24 0.69 -1.18 16 7 C -0.16 -5.60 5.77 -21.10 -0.12 -5.72 16 8 C 0.29 11.06 13.51 88.33 1.19 12.25 16 9 N -0.46 -18.37 18.54 19.00 0.35 -18.02 16 10 C 0.37 16.31 7.46 85.14 0.64 16.95 16 11 O -0.32 -16.47 8.46 -87.72 -0.74 -17.21 16 12 C 0.24 12.76 1.94 29.10 0.06 12.82 16 13 H 0.05 2.85 5.18 -2.39 -0.01 2.84 16 14 C -0.61 -35.23 8.62 25.60 0.22 -35.01 16 15 H 0.03 1.93 7.82 -2.91 -0.02 1.91 16 16 C 0.00 0.08 5.45 84.65 0.46 0.54 16 17 N -0.90 -51.80 13.63 21.44 0.29 -51.51 16 18 Si 1.11 50.87 29.91 68.60 2.05 52.92 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 C -0.07 -3.64 4.96 -19.87 -0.10 -3.74 16 23 C -0.13 -5.80 9.36 22.27 0.21 -5.59 16 24 C -0.12 -4.48 10.05 22.27 0.22 -4.26 16 25 C -0.13 -4.25 10.05 22.27 0.22 -4.02 16 26 C -0.12 -4.24 10.05 22.27 0.22 -4.02 16 27 C -0.13 -5.95 9.52 22.27 0.21 -5.74 16 28 N -0.55 -23.05 8.13 -296.00 -2.41 -25.45 16 29 H 0.02 0.93 7.93 -2.39 -0.02 0.91 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.13 1.79 7.85 -2.39 -0.02 1.77 16 34 H 0.19 2.16 7.93 -2.91 -0.02 2.13 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.12 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.06 1.13 7.19 -2.39 -0.02 1.12 16 38 H 0.26 15.32 5.30 -92.71 -0.49 14.83 16 39 H 0.10 4.59 7.73 -2.91 -0.02 4.57 16 40 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.10 4.83 6.95 -2.91 -0.02 4.81 16 Total: -1.00 -74.34 372.74 6.23 -68.11 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.31 Total: 19.71 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 5.38 Total: -28.55 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -1.76 Total: -94.98 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.74 Total: -17.21 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -74.34 6.23 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233554905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.085 kcal (2) G-P(sol) polarization free energy of solvation -74.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds