Wall clock time and date at job start Tue Mar 31 2020 13:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35594 * 117.00010 * 2 1 4 4 N 1.32165 * 119.77049 * 0.02562 * 3 2 1 5 5 C 1.31957 * 121.77488 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.44040 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47395 * 264.99827 * 6 5 4 8 8 C 1.53006 * 109.46758 * 144.99919 * 6 5 4 9 9 C 1.38216 * 121.11324 * 0.27383 * 5 4 3 10 10 C 1.38522 * 119.41747 * 359.43167 * 9 5 4 11 11 C 1.39628 * 118.37063 * 0.55525 * 10 9 5 12 12 C 1.48217 * 120.56813 * 179.71330 * 11 10 9 13 13 C 1.39858 * 119.53933 * 129.74854 * 12 11 10 14 14 C 1.37694 * 121.16196 * 179.75278 * 13 12 11 15 15 C 1.39595 * 120.19232 * 0.51618 * 14 13 12 16 16 C 1.43200 * 120.45213 * 179.72205 * 15 14 13 17 17 N 7.26741 * 141.79926 * 178.70200 * 2 1 3 18 18 C 1.46550 * 119.09530 * 359.74717 * 15 14 13 19 19 C 1.40849 * 120.54988 * 179.97438 * 18 15 14 20 20 H 1.07992 * 119.99867 * 330.14315 * 19 18 15 21 21 C 1.40228 * 119.99702 * 150.15354 * 19 18 15 22 22 N 1.30664 * 119.99711 * 161.89283 * 21 19 18 23 23 Si 1.86795 * 120.00268 * 341.88286 * 21 19 18 24 24 H 1.48498 * 109.47171 * 95.39752 * 23 21 19 25 25 H 1.48503 * 109.47487 * 215.39521 * 23 21 19 26 26 H 1.48507 * 109.47186 * 335.39600 * 23 21 19 27 27 C 1.38649 * 119.53832 * 310.01737 * 12 11 10 28 28 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46453 * 299.99659 * 1 2 3 30 30 H 1.08995 * 109.47020 * 59.99782 * 1 2 3 31 31 H 1.08996 * 109.47394 * 25.00342 * 6 5 4 32 32 H 1.09006 * 109.47242 * 300.00408 * 7 6 5 33 33 H 1.09003 * 109.47083 * 60.00462 * 7 6 5 34 34 H 1.09001 * 109.47321 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.46987 * 60.00139 * 8 6 5 36 36 H 1.09001 * 109.46910 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47090 * 300.00163 * 8 6 5 38 38 H 1.08000 * 120.29040 * 179.72268 * 9 5 4 39 39 H 1.07998 * 120.81832 * 180.26261 * 10 9 5 40 40 H 1.08000 * 119.42079 * 359.97438 * 13 12 11 41 41 H 1.08003 * 119.90155 * 180.23306 * 14 13 12 42 42 H 0.96997 * 119.99745 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.14087 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3204 2.3137 0.0005 5 6 1.8780 3.5097 0.0010 6 6 1.0015 4.7355 0.0010 7 6 0.8077 5.2239 -1.4359 8 6 1.6659 5.8374 0.8290 9 6 3.2522 3.6570 -0.0046 10 6 4.0574 2.5298 0.0011 11 6 3.4433 1.2758 0.0005 12 6 4.2579 0.0375 0.0000 13 6 3.9868 -0.9665 0.9351 14 6 4.7191 -2.1323 0.9614 15 6 5.7609 -2.3275 0.0530 16 6 6.5300 -3.5351 0.0792 17 7 7.1401 -4.4931 0.1018 18 6 6.0572 -1.2794 -0.9276 19 6 7.1017 -1.4440 -1.8579 20 1 7.9645 -2.0406 -1.6011 21 6 7.0214 -0.8331 -3.1176 22 7 8.1001 -0.6782 -3.8385 23 14 5.3724 -0.2408 -3.7650 24 1 5.2091 1.2026 -3.4570 25 1 5.3163 -0.4426 -5.2352 26 1 4.2806 -1.0117 -3.1176 27 6 5.2816 -0.1068 -0.9238 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.0324 4.4893 0.4349 32 1 1.7769 5.4702 -1.8698 33 1 0.3344 4.4390 -2.0257 34 1 0.1741 6.1109 -1.4358 35 1 2.6351 6.0836 0.3951 36 1 1.0322 6.7242 0.8286 37 1 1.8040 5.4894 1.8527 38 1 3.6945 4.6423 -0.0086 39 1 5.1337 2.6186 0.0011 40 1 3.1866 -0.8266 1.6468 41 1 4.4898 -2.8959 1.6899 42 1 8.0445 -0.2560 -4.7100 43 1 5.4826 0.6783 -1.6377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236443694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:01 Heat of formation + Delta-G solvation = 27.610704 kcal Electronic energy + Delta-G solvation = -26299.919914 eV Core-core repulsion = 22695.624441 eV Total energy + Delta-G solvation = -3604.295473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66821 -38.10713 -37.93505 -35.57483 -34.99352 -34.01991 -32.61506 -30.98305 -30.59545 -28.60943 -27.42536 -26.90311 -25.65059 -24.33743 -22.83507 -21.71074 -21.17961 -20.38687 -17.86944 -17.72283 -17.62508 -16.64063 -16.00681 -15.82980 -15.25076 -14.66404 -14.50893 -14.31365 -14.05922 -13.67910 -13.59978 -13.28994 -13.11173 -13.02294 -12.73714 -12.69027 -12.35776 -12.19050 -11.91585 -11.84160 -11.65746 -11.56955 -11.41299 -11.37966 -11.12140 -11.04639 -10.94948 -10.79118 -10.56132 -10.22653 -9.94638 -9.58560 -9.44785 -9.36900 -8.38607 -7.92280 -7.43079 -7.27482 -4.80202 1.06966 1.46267 1.99617 2.50604 2.94853 3.03940 3.16775 3.27089 3.74254 3.79154 3.85512 4.05743 4.10914 4.41955 4.64602 4.95249 5.02551 5.05623 5.12444 5.18925 5.27563 5.30379 5.35602 5.38762 5.42033 5.45891 5.61110 5.63399 5.69491 5.75895 5.78327 5.82209 6.01683 6.06444 6.17260 6.21000 6.34034 6.38510 6.56827 6.62367 6.88138 6.97878 7.29670 7.39493 7.46978 7.57619 7.74860 7.99349 8.02135 8.29078 8.42281 8.74418 9.71796 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.004300 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.016802 B = 6509.754447 C = 7538.113839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.288 6.288 3 C 0.331 3.669 4 N -0.540 5.540 5 C 0.161 3.839 6 C -0.044 4.044 7 C -0.141 4.141 8 C -0.146 4.146 9 C -0.207 4.207 10 C -0.034 4.034 11 C -0.103 4.103 12 C 0.022 3.978 13 C -0.219 4.219 14 C -0.018 4.018 15 C -0.166 4.166 16 C 0.297 3.703 17 N -0.498 5.498 18 C 0.128 3.872 19 C -0.418 4.418 20 H 0.098 0.902 21 C 0.086 3.914 22 N -0.778 5.778 23 Si 0.905 3.095 24 H -0.264 1.264 25 H -0.284 1.284 26 H -0.235 1.235 27 C -0.217 4.217 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.293 0.707 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 13.791 4.431 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.194 6.194 3 C 0.152 3.848 4 N -0.264 5.264 5 C 0.024 3.976 6 C -0.063 4.063 7 C -0.199 4.199 8 C -0.204 4.204 9 C -0.227 4.227 10 C -0.059 4.059 11 C -0.106 4.106 12 C 0.021 3.979 13 C -0.238 4.238 14 C -0.039 4.039 15 C -0.171 4.171 16 C -0.013 4.013 17 N -0.177 5.177 18 C 0.122 3.878 19 C -0.445 4.445 20 H 0.116 0.884 21 C -0.138 4.138 22 N -0.399 5.399 23 Si 0.730 3.270 24 H -0.190 1.190 25 H -0.211 1.211 26 H -0.158 1.158 27 C -0.236 4.236 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.275 11.986 4.229 19.113 hybrid contribution -0.086 0.844 -0.532 1.001 sum -14.361 12.830 3.697 19.609 Atomic orbital electron populations 1.22818 0.78188 1.02706 1.01886 1.86412 1.21871 1.23827 1.87293 1.19810 0.88568 0.84432 0.92013 1.67013 1.40755 0.98231 1.20399 1.20746 0.91732 0.91228 0.93854 1.20014 0.98328 0.90809 0.97172 1.21801 1.02092 1.01011 0.94969 1.21921 1.00975 0.97605 0.99901 1.21704 0.93927 0.99684 1.07394 1.21636 1.00895 0.90259 0.93123 1.19115 0.90255 0.95047 1.06208 1.18105 0.93203 0.91153 0.95483 1.20066 1.04632 0.95324 1.03818 1.20487 0.92520 0.95802 0.95062 1.16912 1.02031 0.90466 1.07741 1.25695 0.91975 0.92275 0.91402 1.81036 1.11666 1.13210 1.11794 1.18336 0.90165 0.88678 0.90595 1.19629 1.03273 1.24692 0.96906 0.88435 1.26317 0.98873 0.91875 0.96713 1.69600 1.30325 1.28614 1.11367 0.86376 0.82712 0.80456 0.77482 1.18956 1.21128 1.15804 1.20981 1.00946 0.98639 1.03023 0.88813 0.92663 0.92728 0.89554 0.92340 0.92394 0.92044 0.91952 0.92039 0.92307 0.84606 0.83764 0.87861 0.87638 0.89622 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.29 -4.75 8.82 -18.48 -0.16 -4.91 16 3 C 0.33 5.60 7.40 -16.74 -0.12 5.48 16 4 N -0.54 -8.19 9.12 -9.27 -0.08 -8.28 16 5 C 0.16 2.11 5.79 -82.55 -0.48 1.63 16 6 C -0.04 -0.43 3.23 -91.77 -0.30 -0.72 16 7 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 8 C -0.15 -1.12 8.62 37.16 0.32 -0.80 16 9 C -0.21 -2.65 9.16 -39.48 -0.36 -3.02 16 10 C -0.03 -0.52 9.62 -38.96 -0.37 -0.89 16 11 C -0.10 -1.83 5.46 -104.61 -0.57 -2.40 16 12 C 0.02 0.44 5.29 -105.04 -0.56 -0.12 16 13 C -0.22 -4.17 8.71 -39.17 -0.34 -4.51 16 14 C -0.02 -0.35 9.74 -39.27 -0.38 -0.73 16 15 C -0.17 -3.70 5.95 -104.12 -0.62 -4.32 16 16 C 0.30 6.92 14.35 -22.47 -0.32 6.60 16 17 N -0.50 -12.07 18.54 41.84 0.78 -11.29 16 18 C 0.13 3.01 5.26 -104.67 -0.55 2.46 16 19 C -0.42 -10.64 9.03 -37.85 -0.34 -10.98 16 20 H 0.10 2.70 7.65 -52.49 -0.40 2.30 16 21 C 0.09 2.09 5.41 -17.30 -0.09 2.00 16 22 N -0.78 -19.28 13.92 55.56 0.77 -18.51 16 23 Si 0.90 19.36 24.53 -169.99 -4.17 15.19 16 24 H -0.26 -5.39 6.72 56.52 0.38 -5.01 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.24 -5.23 6.86 56.52 0.39 -4.84 16 27 C -0.22 -4.70 6.63 -38.55 -0.26 -4.96 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.45 6.48 -51.93 -0.34 0.11 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.14 1.35 6.29 -52.49 -0.33 1.02 16 39 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.10 1.81 7.64 -52.49 -0.40 1.41 16 41 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 42 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 43 H 0.11 2.34 4.72 -52.49 -0.25 2.09 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -27.83 365.19 -6.86 -34.68 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.53 Total: 2.28 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -3.96 Total: -14.66 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 1.46 Total: -38.08 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.16 Total: -4.91 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.17 Total: 15.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.83 -6.86 -34.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236443694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.293 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds