Wall clock time and date at job start Tue Mar 31 2020 13:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35594 * 117.00010 * 2 1 4 4 N 1.32165 * 119.77049 * 0.02562 * 3 2 1 5 5 C 1.31957 * 121.77488 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.44040 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47395 * 264.99827 * 6 5 4 8 8 C 1.53006 * 109.46758 * 144.99919 * 6 5 4 9 9 C 1.38216 * 121.11324 * 0.27383 * 5 4 3 10 10 C 1.38522 * 119.41747 * 359.43167 * 9 5 4 11 11 C 1.39628 * 118.37063 * 0.55525 * 10 9 5 12 12 C 1.48217 * 120.56813 * 179.71330 * 11 10 9 13 13 C 1.39858 * 119.53933 * 129.74854 * 12 11 10 14 14 C 1.37694 * 121.16196 * 179.75278 * 13 12 11 15 15 C 1.39595 * 120.19232 * 0.51618 * 14 13 12 16 16 C 1.43200 * 120.45213 * 179.72205 * 15 14 13 17 17 N 7.26741 * 141.79926 * 178.70200 * 2 1 3 18 18 C 1.46550 * 119.09530 * 359.74717 * 15 14 13 19 19 C 1.40849 * 120.54988 * 179.97438 * 18 15 14 20 20 H 1.07992 * 119.99867 * 330.14315 * 19 18 15 21 21 C 1.40228 * 119.99702 * 150.15354 * 19 18 15 22 22 N 1.30664 * 119.99711 * 161.89283 * 21 19 18 23 23 Si 1.86795 * 120.00268 * 341.88286 * 21 19 18 24 24 H 1.48498 * 109.47171 * 95.39752 * 23 21 19 25 25 H 1.48503 * 109.47487 * 215.39521 * 23 21 19 26 26 H 1.48507 * 109.47186 * 335.39600 * 23 21 19 27 27 C 1.38649 * 119.53832 * 310.01737 * 12 11 10 28 28 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46453 * 299.99659 * 1 2 3 30 30 H 1.08995 * 109.47020 * 59.99782 * 1 2 3 31 31 H 1.08996 * 109.47394 * 25.00342 * 6 5 4 32 32 H 1.09006 * 109.47242 * 300.00408 * 7 6 5 33 33 H 1.09003 * 109.47083 * 60.00462 * 7 6 5 34 34 H 1.09001 * 109.47321 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.46987 * 60.00139 * 8 6 5 36 36 H 1.09001 * 109.46910 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47090 * 300.00163 * 8 6 5 38 38 H 1.08000 * 120.29040 * 179.72268 * 9 5 4 39 39 H 1.07998 * 120.81832 * 180.26261 * 10 9 5 40 40 H 1.08000 * 119.42079 * 359.97438 * 13 12 11 41 41 H 1.08003 * 119.90155 * 180.23306 * 14 13 12 42 42 H 0.96997 * 119.99745 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.14087 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3204 2.3137 0.0005 5 6 1.8780 3.5097 0.0010 6 6 1.0015 4.7355 0.0010 7 6 0.8077 5.2239 -1.4359 8 6 1.6659 5.8374 0.8290 9 6 3.2522 3.6570 -0.0046 10 6 4.0574 2.5298 0.0011 11 6 3.4433 1.2758 0.0005 12 6 4.2579 0.0375 0.0000 13 6 3.9868 -0.9665 0.9351 14 6 4.7191 -2.1323 0.9614 15 6 5.7609 -2.3275 0.0530 16 6 6.5300 -3.5351 0.0792 17 7 7.1401 -4.4931 0.1018 18 6 6.0572 -1.2794 -0.9276 19 6 7.1017 -1.4440 -1.8579 20 1 7.9645 -2.0406 -1.6011 21 6 7.0214 -0.8331 -3.1176 22 7 8.1001 -0.6782 -3.8385 23 14 5.3724 -0.2408 -3.7650 24 1 5.2091 1.2026 -3.4570 25 1 5.3163 -0.4426 -5.2352 26 1 4.2806 -1.0117 -3.1176 27 6 5.2816 -0.1068 -0.9238 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.0324 4.4893 0.4349 32 1 1.7769 5.4702 -1.8698 33 1 0.3344 4.4390 -2.0257 34 1 0.1741 6.1109 -1.4358 35 1 2.6351 6.0836 0.3951 36 1 1.0322 6.7242 0.8286 37 1 1.8040 5.4894 1.8527 38 1 3.6945 4.6423 -0.0086 39 1 5.1337 2.6186 0.0011 40 1 3.1866 -0.8266 1.6468 41 1 4.4898 -2.8959 1.6899 42 1 8.0445 -0.2560 -4.7100 43 1 5.4826 0.6783 -1.6377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236443694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:00 Heat of formation + Delta-G solvation = 12.562662 kcal Electronic energy + Delta-G solvation = -26300.572446 eV Core-core repulsion = 22695.624441 eV Total energy + Delta-G solvation = -3604.948005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80740 -39.60514 -39.15252 -37.18499 -36.24504 -35.68789 -33.89634 -32.55353 -32.02147 -29.91035 -28.17614 -27.81275 -27.38667 -25.55658 -24.01128 -23.10349 -22.79198 -21.40053 -19.56165 -19.32458 -18.85164 -17.80289 -17.41527 -16.95648 -16.59331 -16.05359 -15.91568 -15.39058 -15.31526 -14.98813 -14.78961 -14.57615 -14.54997 -14.42378 -14.22723 -13.86679 -13.71590 -13.60784 -13.32816 -13.23929 -12.89725 -12.80389 -12.73951 -12.56213 -12.24655 -12.18808 -12.16884 -12.00845 -11.86599 -11.68712 -11.65571 -11.10070 -10.80183 -10.56742 -9.72186 -9.62657 -9.09029 -8.90011 -6.67605 -0.24514 0.33355 0.45514 0.81712 1.22411 1.33603 1.44566 1.97471 2.02085 2.14830 2.25749 2.57599 2.76868 3.12599 3.43942 3.50812 3.77878 3.81576 4.08332 4.18686 4.20820 4.26856 4.34344 4.38774 4.48005 4.50511 4.62447 4.66915 4.73844 4.78827 4.86288 4.88367 4.94290 5.00478 5.03595 5.14763 5.18691 5.25818 5.34624 5.39829 5.45329 5.54736 5.66467 5.71743 5.89620 6.01557 6.17216 6.33188 6.49595 6.58980 6.88107 6.89405 7.97941 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.004300 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.016802 B = 6509.754447 C = 7538.113839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.323 3.677 4 N -0.546 5.546 5 C 0.164 3.836 6 C -0.043 4.043 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.201 4.201 10 C -0.036 4.036 11 C -0.142 4.142 12 C 0.033 3.967 13 C -0.203 4.203 14 C -0.010 4.010 15 C -0.183 4.183 16 C 0.303 3.697 17 N -0.522 5.522 18 C 0.122 3.878 19 C -0.457 4.457 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.818 5.818 23 Si 0.952 3.048 24 H -0.246 1.246 25 H -0.273 1.273 26 H -0.251 1.251 27 C -0.228 4.228 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.302 0.698 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 16.577 5.469 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.217 6.217 3 C 0.144 3.856 4 N -0.270 5.270 5 C 0.027 3.973 6 C -0.062 4.062 7 C -0.196 4.196 8 C -0.201 4.201 9 C -0.221 4.221 10 C -0.061 4.061 11 C -0.144 4.144 12 C 0.032 3.968 13 C -0.223 4.223 14 C -0.031 4.031 15 C -0.189 4.189 16 C -0.007 4.007 17 N -0.201 5.201 18 C 0.117 3.883 19 C -0.485 4.485 20 H 0.075 0.925 21 C -0.160 4.160 22 N -0.442 5.442 23 Si 0.774 3.226 24 H -0.171 1.171 25 H -0.199 1.199 26 H -0.174 1.174 27 C -0.247 4.247 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.114 0.886 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.338 14.772 5.275 23.380 hybrid contribution 0.656 0.078 -0.655 0.930 sum -16.682 14.850 4.620 22.807 Atomic orbital electron populations 1.23043 0.76199 1.04357 1.02218 1.86357 1.23983 1.24068 1.87291 1.19872 0.88430 0.85104 0.92173 1.67133 1.40636 0.98496 1.20770 1.21485 0.92649 0.91708 0.91480 1.20144 0.97873 0.89919 0.98247 1.21797 1.02554 1.01408 0.93878 1.21921 1.01596 0.97407 0.99185 1.22040 0.93693 1.00403 1.05929 1.21847 1.01618 0.90202 0.92396 1.19085 0.90639 0.94833 1.09878 1.18372 0.92139 0.92277 0.94028 1.20431 1.04124 0.94516 1.03186 1.20805 0.90988 0.96709 0.94566 1.17158 1.03086 0.90017 1.08614 1.25965 0.91637 0.92299 0.90772 1.81013 1.12307 1.14118 1.12680 1.18463 0.89982 0.89533 0.90327 1.19486 1.03474 1.26723 0.98848 0.92502 1.26851 1.01234 0.91671 0.96264 1.69612 1.31679 1.30505 1.12358 0.85671 0.78824 0.80723 0.77355 1.17080 1.19922 1.17401 1.20978 1.01806 0.97986 1.03937 0.86574 0.91925 0.92738 0.89532 0.92167 0.93912 0.89764 0.91179 0.90101 0.92675 0.81380 0.83103 0.85563 0.84539 0.88638 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.98 16 2 O -0.31 -9.60 8.82 -89.04 -0.78 -10.39 16 3 C 0.32 10.26 7.40 85.08 0.63 10.89 16 4 N -0.55 -15.23 9.12 -296.20 -2.70 -17.93 16 5 C 0.16 3.78 5.79 42.53 0.25 4.02 16 6 C -0.04 -0.67 3.23 -11.54 -0.04 -0.71 16 7 C -0.14 -1.96 9.18 71.98 0.66 -1.30 16 8 C -0.14 -1.60 8.62 71.98 0.62 -0.98 16 9 C -0.20 -4.49 9.16 22.33 0.20 -4.28 16 10 C -0.04 -1.00 9.62 22.67 0.22 -0.78 16 11 C -0.14 -4.73 5.46 -19.86 -0.11 -4.84 16 12 C 0.03 1.28 5.29 -20.13 -0.11 1.17 16 13 C -0.20 -7.31 8.71 22.53 0.20 -7.12 16 14 C -0.01 -0.38 9.74 22.47 0.22 -0.16 16 15 C -0.18 -8.23 5.95 -19.54 -0.12 -8.34 16 16 C 0.30 14.46 14.35 88.33 1.27 15.73 16 17 N -0.52 -25.94 18.54 19.00 0.35 -25.58 16 18 C 0.12 5.89 5.26 -19.90 -0.10 5.79 16 19 C -0.46 -24.58 9.03 23.39 0.21 -24.37 16 20 H 0.06 3.41 7.65 -2.91 -0.02 3.39 16 21 C 0.06 3.01 5.41 85.35 0.46 3.48 16 22 N -0.82 -42.30 13.92 21.87 0.30 -41.99 16 23 Si 0.95 40.21 24.53 68.60 1.68 41.89 16 24 H -0.25 -9.56 6.72 99.48 0.67 -8.89 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.25 -11.06 6.86 99.48 0.68 -10.38 16 27 C -0.23 -9.85 6.63 22.94 0.15 -9.70 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.68 6.48 -2.38 -0.02 0.67 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.17 2.60 6.29 -2.91 -0.02 2.58 16 39 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.13 4.02 7.64 -2.91 -0.02 4.00 16 41 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 42 H 0.30 13.84 8.29 -92.71 -0.77 13.07 16 43 H 0.11 4.66 4.72 -2.91 -0.01 4.65 16 Total: -1.00 -62.82 365.19 5.62 -57.20 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.98 Total: 16.33 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 5.79 Total: -19.53 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.04 Total: -85.51 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.78 Total: -10.39 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.68 Total: 41.89 kcal Total: -62.82 5.62 -57.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236443694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.758 kcal (2) G-P(sol) polarization free energy of solvation -62.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds