Wall clock time and date at job start Tue Mar 31 2020 13:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35550 * 116.99721 * 2 1 4 4 N 1.32150 * 119.79555 * 0.02562 * 3 2 1 5 5 C 1.31959 * 121.79595 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.41766 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47338 * 264.99827 * 6 5 4 8 8 C 1.53001 * 109.47270 * 144.99711 * 6 5 4 9 9 C 1.38306 * 121.16263 * 0.25051 * 5 4 3 10 10 C 1.38415 * 119.45100 * 359.49846 * 9 5 4 11 11 C 1.39867 * 118.34989 * 0.49065 * 10 9 5 12 12 C 1.47882 * 120.58682 * 179.77475 * 11 10 9 13 13 C 1.40044 * 119.50116 * 129.70453 * 12 11 10 14 14 C 1.35977 * 121.18343 * 179.74625 * 13 12 11 15 15 C 1.41066 * 120.11040 * 0.52422 * 14 13 12 16 16 C 1.40413 * 120.47791 * 179.75643 * 15 14 13 17 17 H 1.07998 * 120.00058 * 204.72218 * 16 15 14 18 18 C 1.40286 * 120.00143 * 24.73019 * 16 15 14 19 19 N 1.30644 * 119.99841 * 17.52025 * 18 16 15 20 20 Si 1.86794 * 120.00008 * 197.52456 * 18 16 15 21 21 H 1.48497 * 109.47516 * 89.99702 * 20 18 16 22 22 H 1.48497 * 109.47252 * 209.99712 * 20 18 16 23 23 H 1.48499 * 109.47294 * 329.99868 * 20 18 16 24 24 C 1.46656 * 119.03780 * 359.73915 * 15 14 13 25 25 C 1.43200 * 120.56156 * 180.02562 * 24 15 14 26 26 N 7.21241 * 154.90417 * 239.36920 * 2 1 3 27 27 C 1.39053 * 118.87407 * 0.02562 * 24 15 14 28 28 H 1.08996 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46981 * 299.99824 * 1 2 3 30 30 H 1.09006 * 109.47243 * 59.99629 * 1 2 3 31 31 H 1.09004 * 109.47314 * 24.99797 * 6 5 4 32 32 H 1.08999 * 109.47185 * 60.00179 * 7 6 5 33 33 H 1.09003 * 109.47461 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47225 * 299.99795 * 7 6 5 35 35 H 1.08994 * 109.46814 * 59.99865 * 8 6 5 36 36 H 1.09005 * 109.47356 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.46975 * 299.99870 * 8 6 5 38 38 H 1.08004 * 120.27481 * 179.75025 * 9 5 4 39 39 H 1.07996 * 120.83072 * 180.21968 * 10 9 5 40 40 H 1.07996 * 119.41068 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.94120 * 180.23764 * 14 13 12 42 42 H 0.97001 * 120.00238 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.09975 * 179.97438 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 7 1.3206 2.3135 0.0005 5 6 1.8782 3.5095 0.0010 6 6 1.0013 4.7350 0.0010 7 6 0.8073 5.2233 -1.4359 8 6 1.6651 5.8372 0.8290 9 6 3.2533 3.6580 -0.0041 10 6 4.0594 2.5328 0.0006 11 6 3.4455 1.2761 0.0000 12 6 4.2592 0.0412 0.0000 13 6 3.9881 -0.9634 0.9373 14 6 4.7113 -2.1145 0.9646 15 6 5.7638 -2.3110 0.0462 16 6 6.5189 -3.4946 0.0709 17 1 7.5261 -3.5008 -0.3188 18 6 5.9650 -4.6691 0.6015 19 7 4.6714 -4.7702 0.7544 20 14 7.0768 -6.0885 1.0897 21 1 7.4825 -5.9339 2.5097 22 1 6.3464 -7.3703 0.9204 23 1 8.2855 -6.0899 0.2270 24 6 6.0577 -1.2614 -0.9350 25 6 7.1183 -1.4269 -1.8827 26 7 7.9606 -1.5586 -2.6322 27 6 5.2889 -0.1027 -0.9294 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.0322 4.4884 0.4349 32 1 0.3343 4.4382 -2.0257 33 1 0.1726 6.1095 -1.4360 34 1 1.7764 5.4700 -1.8698 35 1 2.6341 6.0837 0.3952 36 1 1.0306 6.7235 0.8294 37 1 1.8032 5.4892 1.8528 38 1 3.6944 4.6439 -0.0077 39 1 5.1356 2.6230 0.0003 40 1 3.1874 -0.8232 1.6483 41 1 4.4825 -2.8777 1.6938 42 1 4.2884 -5.5821 1.1216 43 1 5.4883 0.6831 -1.6428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236445068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:05 Heat of formation + Delta-G solvation = 24.121120 kcal Electronic energy + Delta-G solvation = -25861.176778 eV Core-core repulsion = 22256.729985 eV Total energy + Delta-G solvation = -3604.446793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41832 -37.90648 -37.72630 -35.41310 -35.01911 -34.17505 -32.23581 -30.67009 -29.86434 -28.84115 -27.33881 -26.83429 -25.74353 -23.43379 -22.79950 -21.93010 -21.04209 -20.19484 -17.85303 -17.58492 -17.29725 -16.39768 -15.71432 -15.44040 -15.39517 -14.48142 -14.42652 -14.05290 -13.97805 -13.86586 -13.39813 -13.04289 -12.96595 -12.76176 -12.70135 -12.52639 -12.18331 -11.96875 -11.76767 -11.67665 -11.62150 -11.44477 -11.35668 -11.29205 -11.20431 -10.98922 -10.87493 -10.73142 -10.54415 -9.99510 -9.86667 -9.66335 -9.30407 -9.24294 -8.15648 -7.73935 -7.37332 -7.17014 -4.73470 1.37621 1.65634 2.22692 2.63158 2.88933 2.93567 3.01488 3.49093 3.65060 3.90381 4.00633 4.24618 4.28749 4.42760 4.76869 5.06107 5.15580 5.22865 5.26974 5.37808 5.45465 5.49976 5.50800 5.53889 5.57389 5.62053 5.70437 5.73214 5.84025 5.86665 5.94420 6.10072 6.12745 6.17576 6.33300 6.37390 6.55208 6.64052 6.79659 6.86203 7.00127 7.21763 7.48580 7.62297 7.69794 7.80193 7.86714 8.20780 8.23840 8.37933 8.54524 8.81639 9.67952 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.003189 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.795058 B = 8776.942121 C = 9677.234179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.288 6.288 3 C 0.314 3.686 4 N -0.539 5.539 5 C 0.143 3.857 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.202 4.202 10 C -0.057 4.057 11 C -0.057 4.057 12 C -0.192 4.192 13 C -0.039 4.039 14 C -0.167 4.167 15 C 0.157 3.843 16 C -0.421 4.421 17 H 0.087 0.913 18 C 0.075 3.925 19 N -0.753 5.753 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.191 4.191 25 C 0.301 3.699 26 N -0.510 5.510 27 C -0.002 4.002 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.292 0.708 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 12.182 3.398 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.194 6.194 3 C 0.135 3.865 4 N -0.262 5.262 5 C 0.007 3.993 6 C -0.061 4.061 7 C -0.197 4.197 8 C -0.203 4.203 9 C -0.222 4.222 10 C -0.082 4.082 11 C -0.060 4.060 12 C -0.194 4.194 13 C -0.058 4.058 14 C -0.187 4.187 15 C 0.151 3.849 16 C -0.448 4.448 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.374 5.374 20 Si 0.739 3.261 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.197 4.197 25 C -0.008 4.008 26 N -0.190 5.190 27 C -0.023 4.023 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.805 11.437 2.299 14.615 hybrid contribution 0.568 -0.531 0.470 0.909 sum -8.237 10.905 2.770 13.944 Atomic orbital electron populations 1.22769 0.78575 1.02515 1.01594 1.86405 1.21498 1.23976 1.87487 1.19999 0.88947 0.84161 0.93414 1.66931 1.41044 0.98299 1.19961 1.20603 0.91609 0.91101 0.95992 1.19960 0.98294 0.90981 0.96898 1.21790 1.01880 1.00860 0.95212 1.21908 1.00861 0.97605 0.99931 1.21633 0.93953 0.99435 1.07196 1.21583 1.00314 0.90513 0.95830 1.18938 0.89669 0.94607 1.02789 1.17452 1.02130 0.95179 1.04649 1.20373 0.96744 0.92694 0.96016 1.20880 0.99390 0.97071 1.01309 1.18478 0.89881 0.89774 0.86766 1.19818 1.00929 0.93104 1.30928 0.89460 1.26166 0.95412 1.00835 0.92553 1.69730 1.11905 1.28310 1.27463 0.86138 0.80856 0.78734 0.80374 1.18528 1.19665 1.18062 1.16712 1.01302 1.00666 1.01046 1.25726 0.91998 0.91279 0.91827 1.80982 1.13459 1.10874 1.13640 1.20471 0.92255 0.94333 0.95286 0.88986 0.92930 0.92946 0.89809 0.92466 0.92285 0.92473 0.92065 0.92241 0.92397 0.85216 0.84492 0.88832 0.85698 0.89661 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.61 16 2 O -0.29 -5.17 8.82 -18.35 -0.16 -5.34 16 3 C 0.31 5.62 7.40 -16.65 -0.12 5.50 16 4 N -0.54 -8.69 9.12 -9.19 -0.08 -8.77 16 5 C 0.14 1.98 5.79 -82.51 -0.48 1.50 16 6 C -0.04 -0.44 3.22 -91.78 -0.30 -0.74 16 7 C -0.14 -1.30 9.17 37.16 0.34 -0.96 16 8 C -0.15 -1.22 8.62 37.16 0.32 -0.90 16 9 C -0.20 -2.68 9.15 -39.49 -0.36 -3.04 16 10 C -0.06 -0.88 9.64 -38.91 -0.37 -1.25 16 11 C -0.06 -1.03 5.47 -104.57 -0.57 -1.60 16 12 C -0.19 -3.89 5.31 -104.82 -0.56 -4.45 16 13 C -0.04 -0.83 8.64 -39.72 -0.34 -1.17 16 14 C -0.17 -3.83 8.63 -39.32 -0.34 -4.17 16 15 C 0.16 3.77 5.74 -104.61 -0.60 3.17 16 16 C -0.42 -10.18 8.56 -37.99 -0.33 -10.50 16 17 H 0.09 2.14 7.37 -52.49 -0.39 1.75 16 18 C 0.07 1.67 5.15 -17.29 -0.09 1.58 16 19 N -0.75 -17.05 10.95 55.57 0.61 -16.44 16 20 Si 0.92 16.94 29.60 -169.99 -5.03 11.91 16 21 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 C -0.19 -4.39 5.93 -104.27 -0.62 -5.01 16 25 C 0.30 7.09 14.28 -22.50 -0.32 6.77 16 26 N -0.51 -12.33 18.53 41.80 0.77 -11.55 16 27 C 0.00 -0.05 9.21 -38.83 -0.36 -0.41 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.48 6.47 -51.93 -0.34 0.14 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.13 1.36 6.29 -52.48 -0.33 1.03 16 39 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.09 1.88 7.64 -52.49 -0.40 1.48 16 41 H 0.13 2.90 6.17 -52.48 -0.32 2.58 16 42 H 0.29 5.90 8.29 -40.82 -0.34 5.56 16 43 H 0.10 1.84 8.02 -52.49 -0.42 1.42 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -26.65 370.16 -7.92 -34.57 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.56 Total: 4.12 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -4.05 Total: -14.09 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 1.30 Total: -36.76 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.16 Total: -5.34 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.65 -7.92 -34.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236445068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.692 kcal (2) G-P(sol) polarization free energy of solvation -26.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds