Wall clock time and date at job start Tue Mar 31 2020 13:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35550 * 116.99721 * 2 1 4 4 N 1.32150 * 119.79555 * 0.02562 * 3 2 1 5 5 C 1.31959 * 121.79595 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.41766 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47338 * 264.99827 * 6 5 4 8 8 C 1.53001 * 109.47270 * 144.99711 * 6 5 4 9 9 C 1.38306 * 121.16263 * 0.25051 * 5 4 3 10 10 C 1.38415 * 119.45100 * 359.49846 * 9 5 4 11 11 C 1.39867 * 118.34989 * 0.49065 * 10 9 5 12 12 C 1.47882 * 120.58682 * 179.77475 * 11 10 9 13 13 C 1.40044 * 119.50116 * 129.70453 * 12 11 10 14 14 C 1.35977 * 121.18343 * 179.74625 * 13 12 11 15 15 C 1.41066 * 120.11040 * 0.52422 * 14 13 12 16 16 C 1.40413 * 120.47791 * 179.75643 * 15 14 13 17 17 H 1.07998 * 120.00058 * 204.72218 * 16 15 14 18 18 C 1.40286 * 120.00143 * 24.73019 * 16 15 14 19 19 N 1.30644 * 119.99841 * 17.52025 * 18 16 15 20 20 Si 1.86794 * 120.00008 * 197.52456 * 18 16 15 21 21 H 1.48497 * 109.47516 * 89.99702 * 20 18 16 22 22 H 1.48497 * 109.47252 * 209.99712 * 20 18 16 23 23 H 1.48499 * 109.47294 * 329.99868 * 20 18 16 24 24 C 1.46656 * 119.03780 * 359.73915 * 15 14 13 25 25 C 1.43200 * 120.56156 * 180.02562 * 24 15 14 26 26 N 7.21241 * 154.90417 * 239.36920 * 2 1 3 27 27 C 1.39053 * 118.87407 * 0.02562 * 24 15 14 28 28 H 1.08996 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46981 * 299.99824 * 1 2 3 30 30 H 1.09006 * 109.47243 * 59.99629 * 1 2 3 31 31 H 1.09004 * 109.47314 * 24.99797 * 6 5 4 32 32 H 1.08999 * 109.47185 * 60.00179 * 7 6 5 33 33 H 1.09003 * 109.47461 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47225 * 299.99795 * 7 6 5 35 35 H 1.08994 * 109.46814 * 59.99865 * 8 6 5 36 36 H 1.09005 * 109.47356 * 180.02562 * 8 6 5 37 37 H 1.09007 * 109.46975 * 299.99870 * 8 6 5 38 38 H 1.08004 * 120.27481 * 179.75025 * 9 5 4 39 39 H 1.07996 * 120.83072 * 180.21968 * 10 9 5 40 40 H 1.07996 * 119.41068 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.94120 * 180.23764 * 14 13 12 42 42 H 0.97001 * 120.00238 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.09975 * 179.97438 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 7 1.3206 2.3135 0.0005 5 6 1.8782 3.5095 0.0010 6 6 1.0013 4.7350 0.0010 7 6 0.8073 5.2233 -1.4359 8 6 1.6651 5.8372 0.8290 9 6 3.2533 3.6580 -0.0041 10 6 4.0594 2.5328 0.0006 11 6 3.4455 1.2761 0.0000 12 6 4.2592 0.0412 0.0000 13 6 3.9881 -0.9634 0.9373 14 6 4.7113 -2.1145 0.9646 15 6 5.7638 -2.3110 0.0462 16 6 6.5189 -3.4946 0.0709 17 1 7.5261 -3.5008 -0.3188 18 6 5.9650 -4.6691 0.6015 19 7 4.6714 -4.7702 0.7544 20 14 7.0768 -6.0885 1.0897 21 1 7.4825 -5.9339 2.5097 22 1 6.3464 -7.3703 0.9204 23 1 8.2855 -6.0899 0.2270 24 6 6.0577 -1.2614 -0.9350 25 6 7.1183 -1.4269 -1.8827 26 7 7.9606 -1.5586 -2.6322 27 6 5.2889 -0.1027 -0.9294 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.0322 4.4884 0.4349 32 1 0.3343 4.4382 -2.0257 33 1 0.1726 6.1095 -1.4360 34 1 1.7764 5.4700 -1.8698 35 1 2.6341 6.0837 0.3952 36 1 1.0306 6.7235 0.8294 37 1 1.8032 5.4892 1.8528 38 1 3.6944 4.6439 -0.0077 39 1 5.1356 2.6230 0.0003 40 1 3.1874 -0.8232 1.6483 41 1 4.4825 -2.8777 1.6938 42 1 4.2884 -5.5821 1.1216 43 1 5.4883 0.6831 -1.6428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236445068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:04 Heat of formation + Delta-G solvation = 11.793834 kcal Electronic energy + Delta-G solvation = -25861.711329 eV Core-core repulsion = 22256.729985 eV Total energy + Delta-G solvation = -3604.981344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63978 -39.43447 -39.05922 -37.06689 -36.41421 -35.60998 -33.57862 -32.09597 -31.55703 -30.25326 -28.20756 -27.85862 -27.21607 -24.71496 -24.23692 -23.43150 -22.50261 -21.32839 -19.54530 -19.00826 -18.69245 -17.64026 -17.18436 -16.82067 -16.56799 -15.95746 -15.65997 -15.54535 -15.21319 -14.92626 -14.58634 -14.52845 -14.43082 -14.23488 -13.94928 -13.72893 -13.61156 -13.49393 -13.24266 -13.14777 -12.85876 -12.73966 -12.68978 -12.55835 -12.30841 -12.14691 -12.05497 -11.84894 -11.77875 -11.56997 -11.55530 -11.24955 -10.62149 -10.45688 -9.61328 -9.45765 -8.94288 -8.79364 -6.51171 0.11158 0.44470 0.48247 1.02456 1.36157 1.48574 1.51092 2.03596 2.12346 2.27923 2.41409 2.63662 2.90379 3.23923 3.54876 3.68066 3.87209 4.12643 4.22858 4.25371 4.31330 4.33914 4.40669 4.47138 4.47951 4.54036 4.62571 4.77257 4.86079 4.88317 4.92381 5.01301 5.04114 5.07215 5.10719 5.21836 5.28827 5.36793 5.42732 5.47478 5.49944 5.66963 5.83052 5.89716 6.08992 6.11401 6.45305 6.46794 6.61813 6.78345 6.96361 7.03213 8.04406 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.003189 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.795058 B = 8776.942121 C = 9677.234179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.316 6.316 3 C 0.301 3.699 4 N -0.548 5.548 5 C 0.145 3.855 6 C -0.042 4.042 7 C -0.136 4.136 8 C -0.142 4.142 9 C -0.196 4.196 10 C -0.050 4.050 11 C -0.095 4.095 12 C -0.176 4.176 13 C -0.037 4.037 14 C -0.180 4.180 15 C 0.136 3.864 16 C -0.455 4.455 17 H 0.073 0.927 18 C 0.044 3.956 19 N -0.778 5.778 20 Si 0.980 3.020 21 H -0.251 1.251 22 H -0.258 1.258 23 H -0.268 1.268 24 C -0.210 4.210 25 C 0.307 3.693 26 N -0.529 5.529 27 C -0.004 4.004 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.302 0.698 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 14.528 3.830 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.222 6.222 3 C 0.123 3.877 4 N -0.272 5.272 5 C 0.009 3.991 6 C -0.061 4.061 7 C -0.194 4.194 8 C -0.200 4.200 9 C -0.215 4.215 10 C -0.075 4.075 11 C -0.098 4.098 12 C -0.178 4.178 13 C -0.056 4.056 14 C -0.199 4.199 15 C 0.131 3.869 16 C -0.482 4.482 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.400 5.400 20 Si 0.800 3.200 21 H -0.175 1.175 22 H -0.182 1.182 23 H -0.192 1.192 24 C -0.216 4.216 25 C -0.002 4.002 26 N -0.208 5.208 27 C -0.024 4.024 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.707 13.794 2.732 17.087 hybrid contribution 0.638 -0.995 0.337 1.230 sum -9.069 12.798 3.070 15.983 Atomic orbital electron populations 1.22949 0.76757 1.03850 1.01980 1.86352 1.23534 1.24697 1.87657 1.20106 0.89060 0.84651 0.93924 1.67033 1.41083 0.98642 1.20452 1.21388 0.92776 0.91468 0.93499 1.20096 0.97688 0.90149 0.98178 1.21775 1.02513 1.01207 0.93910 1.21904 1.01611 0.97350 0.99089 1.21991 0.93548 1.00386 1.05594 1.21838 1.01382 0.89995 0.94251 1.18926 0.89816 0.94635 1.06382 1.17670 1.01329 0.95711 1.03081 1.20515 0.96373 0.92432 0.96278 1.20829 0.99959 0.97704 1.01426 1.18721 0.90524 0.90314 0.87373 1.19887 1.00690 0.94375 1.33235 0.90920 1.26833 0.96581 1.02446 0.91966 1.69728 1.12959 1.29533 1.27738 0.85207 0.78549 0.76171 0.80067 1.17482 1.18241 1.19240 1.16891 1.01921 1.01555 1.01205 1.25877 0.91873 0.90801 0.91623 1.80956 1.14014 1.11484 1.14391 1.20669 0.92006 0.94103 0.95652 0.87257 0.92330 0.92664 0.90173 0.94115 0.89967 0.91992 0.91030 0.90222 0.92947 0.81681 0.82952 0.88051 0.86568 0.88589 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.38 113.37 1.18 2.24 16 2 O -0.32 -11.35 8.82 -88.56 -0.78 -12.13 16 3 C 0.30 10.57 7.40 85.14 0.63 11.20 16 4 N -0.55 -16.91 9.12 -295.99 -2.70 -19.61 16 5 C 0.15 3.65 5.79 42.55 0.25 3.90 16 6 C -0.04 -0.75 3.22 -11.54 -0.04 -0.78 16 7 C -0.14 -2.10 9.17 71.98 0.66 -1.44 16 8 C -0.14 -1.80 8.62 71.98 0.62 -1.18 16 9 C -0.20 -4.54 9.15 22.33 0.20 -4.34 16 10 C -0.05 -1.40 9.64 22.71 0.22 -1.18 16 11 C -0.09 -3.34 5.47 -19.83 -0.11 -3.44 16 12 C -0.18 -7.13 5.31 -19.99 -0.11 -7.23 16 13 C -0.04 -1.59 8.64 22.18 0.19 -1.40 16 14 C -0.18 -8.53 8.63 22.44 0.19 -8.34 16 15 C 0.14 6.80 5.74 -19.86 -0.11 6.68 16 16 C -0.46 -22.92 8.56 23.30 0.20 -22.72 16 17 H 0.07 3.75 7.37 -2.91 -0.02 3.73 16 18 C 0.04 2.00 5.15 85.37 0.44 2.44 16 19 N -0.78 -36.00 10.95 21.88 0.24 -35.76 16 20 Si 0.98 35.14 29.60 68.60 2.03 37.17 16 21 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 22 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 23 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 24 C -0.21 -9.87 5.93 -19.64 -0.12 -9.99 16 25 C 0.31 14.78 14.28 88.34 1.26 16.05 16 26 N -0.53 -25.98 18.53 18.99 0.35 -25.63 16 27 C 0.00 -0.15 9.21 22.76 0.21 0.06 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 30 H 0.05 1.41 8.11 -2.38 -0.02 1.39 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 0.77 6.47 -2.39 -0.02 0.75 16 36 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.17 2.65 6.29 -2.91 -0.02 2.64 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.10 4.14 7.64 -2.91 -0.02 4.12 16 41 H 0.12 5.63 6.17 -2.91 -0.02 5.61 16 42 H 0.30 12.35 8.29 -92.71 -0.77 11.58 16 43 H 0.12 4.35 8.02 -2.91 -0.02 4.33 16 Total: -1.00 -59.23 370.16 5.95 -53.28 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 1.04 Total: 22.17 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 5.77 Total: -19.48 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.11 Total: -81.00 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.78 Total: -12.13 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -59.23 5.95 -53.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236445068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.077 kcal (2) G-P(sol) polarization free energy of solvation -59.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds