Wall clock time and date at job start Tue Mar 31 2020 13:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47488 * 2 1 4 4 C 1.52998 * 109.47211 * 239.99802 * 2 1 3 5 5 C 1.50697 * 109.46884 * 119.99814 * 2 1 3 6 6 C 1.38479 * 119.37943 * 73.94348 * 5 2 1 7 7 C 1.38371 * 119.54596 * 179.97438 * 6 5 2 8 8 C 1.39950 * 118.37560 * 359.97438 * 7 6 5 9 9 C 1.43207 * 120.62038 * 179.97438 * 8 7 6 10 10 N 6.80604 * 109.73466 * 119.03974 * 2 1 3 11 11 C 1.40751 * 118.76295 * 0.02562 * 8 7 6 12 12 C 1.47955 * 119.84700 * 179.97438 * 11 8 7 13 13 C 1.39459 * 120.17921 * 49.69716 * 12 11 8 14 14 C 1.37932 * 119.93580 * 180.02562 * 13 12 11 15 15 C 1.38508 * 120.29188 * 359.97438 * 14 13 12 16 16 C 1.38081 * 120.35688 * 0.02865 * 15 14 13 17 17 C 1.38781 * 120.06304 * 359.67014 * 16 15 14 18 18 O 1.35607 * 120.14707 * 180.31976 * 17 16 15 19 19 C 1.34806 * 117.00161 * 354.44039 * 18 17 16 20 20 H 1.08005 * 120.00193 * 5.08722 * 19 18 17 21 21 C 1.38669 * 120.00088 * 185.08457 * 19 18 17 22 22 N 1.31536 * 119.99946 * 5.03871 * 21 19 18 23 23 Si 1.86807 * 120.00146 * 185.03788 * 21 19 18 24 24 H 1.48500 * 109.46944 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47092 * 120.00200 * 23 21 19 26 26 H 1.48497 * 109.46877 * 240.00411 * 23 21 19 27 27 N 1.31733 * 119.37514 * 253.66944 * 5 2 1 28 28 H 1.09003 * 109.46973 * 300.00563 * 1 2 3 29 29 H 1.09010 * 109.46616 * 60.00186 * 1 2 3 30 30 H 1.08992 * 109.47560 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47333 * 184.79587 * 3 2 1 32 32 H 1.09003 * 109.46896 * 304.79656 * 3 2 1 33 33 H 1.09002 * 109.47286 * 64.79671 * 3 2 1 34 34 H 1.09003 * 109.47223 * 300.00096 * 4 2 1 35 35 H 1.09000 * 109.47314 * 60.00466 * 4 2 1 36 36 H 1.08999 * 109.47189 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.22519 * 0.02562 * 6 5 2 38 38 H 1.08000 * 120.80876 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.03482 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.85591 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.81816 * 180.02562 * 15 14 13 42 42 H 1.08001 * 119.96484 * 179.97438 * 16 15 14 43 43 H 0.97009 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.9440 -2.0905 1.3018 7 6 2.4046 -2.7463 2.4298 8 6 2.9491 -1.9818 3.4678 9 6 3.4396 -2.6108 4.6572 10 7 3.8281 -3.1097 5.6009 11 6 3.0045 -0.5830 3.3216 12 6 3.5747 0.2485 4.4044 13 6 4.8148 -0.0724 4.9558 14 6 5.3415 0.7059 5.9654 15 6 4.6442 1.8068 6.4349 16 6 3.4154 2.1356 5.8977 17 6 2.8745 1.3663 4.8771 18 8 1.6708 1.6915 4.3439 19 6 0.9970 2.7038 4.9257 20 1 1.4551 3.2691 5.7240 21 6 -0.2842 3.0194 4.4993 22 7 -0.8802 2.2705 3.5971 23 14 -1.1636 4.5082 5.2062 24 1 -0.2833 5.1793 6.1961 25 1 -1.4896 5.4567 4.1111 26 1 -2.4168 4.0724 5.8730 27 7 2.5519 -0.0071 2.2157 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1266 1.4437 -0.0859 32 1 1.6083 1.9806 -0.8439 33 1 1.7486 1.9310 0.9298 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.5193 -2.6512 0.4822 38 1 2.3462 -3.8220 2.5068 39 1 5.3619 -0.9301 4.5932 40 1 6.3018 0.4559 6.3918 41 1 5.0639 2.4111 7.2254 42 1 2.8770 2.9951 6.2689 43 1 -1.7767 2.4910 3.2991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:02 Heat of formation + Delta-G solvation = 54.187176 kcal Electronic energy + Delta-G solvation = -27124.705278 eV Core-core repulsion = 23521.562247 eV Total energy + Delta-G solvation = -3603.143031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39870 -38.92903 -37.03471 -36.23999 -35.69130 -32.63847 -32.28799 -31.51334 -29.29742 -28.66098 -27.04462 -26.80957 -25.43627 -24.38423 -23.47529 -21.61263 -20.84644 -19.47058 -18.54802 -18.03381 -17.15436 -16.11121 -15.75629 -14.99728 -14.76016 -14.55779 -14.16979 -13.84909 -13.76882 -13.73751 -13.53097 -13.42713 -13.26952 -12.75874 -12.63596 -12.56623 -12.46582 -12.03707 -11.98747 -11.76729 -11.63715 -11.39116 -11.26876 -11.03014 -10.95574 -10.80994 -10.67127 -10.57981 -10.49171 -10.46417 -9.57476 -9.47367 -8.98815 -8.88699 -8.73914 -8.01447 -7.24817 -6.51929 -4.07601 0.88325 1.41692 2.15000 2.32873 2.99314 3.08889 3.10448 3.15172 3.33022 3.90437 4.09221 4.22226 4.42581 4.54459 4.78347 4.92841 5.05376 5.13288 5.26564 5.27526 5.34751 5.35863 5.57729 5.67674 5.74853 5.80864 5.86214 5.91596 6.03993 6.07470 6.09150 6.12895 6.16654 6.23837 6.39703 6.41643 6.44704 6.58799 6.68481 6.75908 6.86653 6.99518 7.03211 7.14282 7.27000 7.30564 7.69591 7.78987 7.90979 8.44631 8.92962 9.62303 10.63725 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008342 B = 0.006758 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.732775 B = 4142.181540 C = 6436.412050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.019 4.019 3 C -0.130 4.130 4 C -0.139 4.139 5 C 0.183 3.817 6 C -0.193 4.193 7 C -0.026 4.026 8 C -0.103 4.103 9 C 0.272 3.728 10 N -0.427 5.427 11 C 0.267 3.733 12 C -0.154 4.154 13 C -0.044 4.044 14 C -0.217 4.217 15 C -0.057 4.057 16 C -0.235 4.235 17 C 0.186 3.814 18 O -0.145 6.145 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.046 3.954 22 N -0.845 5.845 23 Si 0.937 3.063 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.277 1.277 27 N -0.441 5.441 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -4.947 -7.580 9.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 C -0.188 4.188 4 C -0.197 4.197 5 C 0.043 3.957 6 C -0.213 4.213 7 C -0.054 4.054 8 C -0.109 4.109 9 C -0.043 4.043 10 N -0.103 5.103 11 C 0.128 3.872 12 C -0.157 4.157 13 C -0.063 4.063 14 C -0.236 4.236 15 C -0.076 4.076 16 C -0.254 4.254 17 C 0.128 3.872 18 O -0.045 6.045 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.160 4.160 22 N -0.478 5.478 23 Si 0.762 3.238 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.202 1.202 27 N -0.148 5.148 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.431 -4.899 -6.531 9.289 hybrid contribution -0.693 0.040 0.238 0.734 sum 3.738 -4.859 -6.293 8.786 Atomic orbital electron populations 1.21878 0.92618 1.01721 1.03410 1.19521 0.96250 0.96181 0.90008 1.21705 1.00168 0.93818 1.03060 1.21952 1.01089 1.00020 0.96598 1.21392 0.90402 0.90177 0.93751 1.21748 1.04747 0.95457 0.99328 1.21378 0.92940 0.99849 0.91243 1.16980 1.08745 0.93671 0.91522 1.25286 0.93270 0.92934 0.92779 1.81159 1.09818 1.09403 1.09921 1.19710 0.89171 0.87469 0.90816 1.17431 0.97875 0.98525 1.01840 1.20632 0.92968 0.97660 0.95025 1.20456 1.01551 0.99396 1.02191 1.20875 0.93780 0.95577 0.97326 1.21144 0.98292 1.03992 1.01978 1.19192 0.87213 0.90477 0.90275 1.84017 1.24216 1.47573 1.48669 1.21434 0.97578 1.08781 1.19254 0.89034 1.25234 0.95431 0.98728 0.96581 1.70051 1.13670 1.36253 1.27799 0.85708 0.79288 0.80012 0.78820 1.19088 1.20021 1.20222 1.67866 1.09150 1.38537 0.99243 0.90299 0.92373 0.93032 0.93187 0.93485 0.89816 0.92456 0.91998 0.92592 0.84431 0.84438 0.87312 0.87242 0.87166 0.85079 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.40 37.16 0.31 -1.70 16 2 C -0.02 -0.27 0.87 -155.66 -0.13 -0.41 16 3 C -0.13 -2.09 7.89 37.16 0.29 -1.80 16 4 C -0.14 -1.51 8.10 37.16 0.30 -1.21 16 5 C 0.18 3.06 5.57 -82.55 -0.46 2.60 16 6 C -0.19 -2.65 9.01 -39.44 -0.36 -3.00 16 7 C -0.03 -0.37 9.90 -38.89 -0.39 -0.75 16 8 C -0.10 -1.79 5.75 -106.38 -0.61 -2.40 16 9 C 0.27 4.86 12.66 -22.47 -0.28 4.57 16 10 N -0.43 -8.01 18.54 41.84 0.78 -7.24 16 11 C 0.27 5.40 6.05 -82.59 -0.50 4.90 16 12 C -0.15 -3.31 5.25 -104.76 -0.55 -3.86 16 13 C -0.04 -0.83 8.43 -39.24 -0.33 -1.16 16 14 C -0.22 -3.89 10.03 -39.59 -0.40 -4.29 16 15 C -0.06 -1.05 10.03 -39.54 -0.40 -1.44 16 16 C -0.23 -5.03 9.16 -39.44 -0.36 -5.39 16 17 C 0.19 4.42 6.63 -38.68 -0.26 4.17 16 18 O -0.14 -3.90 8.75 0.56 0.00 -3.89 16 19 C -0.39 -10.50 9.48 30.89 0.29 -10.21 16 20 H 0.09 2.28 5.21 -52.48 -0.27 2.01 16 21 C 0.05 1.21 5.49 -17.52 -0.10 1.11 16 22 N -0.84 -22.97 13.68 55.48 0.76 -22.21 16 23 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 N -0.44 -8.92 8.19 -5.77 -0.05 -8.96 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.70 7.66 -51.93 -0.40 1.31 16 34 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.14 1.42 6.75 -52.49 -0.35 1.07 16 38 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.88 7.25 -52.49 -0.38 1.50 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 43 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -29.70 367.32 -7.32 -37.02 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.41 Total: 5.30 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -3.92 Total: -20.29 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 1.49 Total: -38.41 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.00 Total: -3.89 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.70 -7.32 -37.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.209 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds