Wall clock time and date at job start Tue Mar 31 2020 13:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47488 * 2 1 4 4 C 1.52998 * 109.47211 * 239.99802 * 2 1 3 5 5 C 1.50697 * 109.46884 * 119.99814 * 2 1 3 6 6 C 1.38479 * 119.37943 * 73.94348 * 5 2 1 7 7 C 1.38371 * 119.54596 * 179.97438 * 6 5 2 8 8 C 1.39950 * 118.37560 * 359.97438 * 7 6 5 9 9 C 1.43207 * 120.62038 * 179.97438 * 8 7 6 10 10 N 6.80604 * 109.73466 * 119.03974 * 2 1 3 11 11 C 1.40751 * 118.76295 * 0.02562 * 8 7 6 12 12 C 1.47955 * 119.84700 * 179.97438 * 11 8 7 13 13 C 1.39459 * 120.17921 * 49.69716 * 12 11 8 14 14 C 1.37932 * 119.93580 * 180.02562 * 13 12 11 15 15 C 1.38508 * 120.29188 * 359.97438 * 14 13 12 16 16 C 1.38081 * 120.35688 * 0.02865 * 15 14 13 17 17 C 1.38781 * 120.06304 * 359.67014 * 16 15 14 18 18 O 1.35607 * 120.14707 * 180.31976 * 17 16 15 19 19 C 1.34806 * 117.00161 * 354.44039 * 18 17 16 20 20 H 1.08005 * 120.00193 * 5.08722 * 19 18 17 21 21 C 1.38669 * 120.00088 * 185.08457 * 19 18 17 22 22 N 1.31536 * 119.99946 * 5.03871 * 21 19 18 23 23 Si 1.86807 * 120.00146 * 185.03788 * 21 19 18 24 24 H 1.48500 * 109.46944 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47092 * 120.00200 * 23 21 19 26 26 H 1.48497 * 109.46877 * 240.00411 * 23 21 19 27 27 N 1.31733 * 119.37514 * 253.66944 * 5 2 1 28 28 H 1.09003 * 109.46973 * 300.00563 * 1 2 3 29 29 H 1.09010 * 109.46616 * 60.00186 * 1 2 3 30 30 H 1.08992 * 109.47560 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47333 * 184.79587 * 3 2 1 32 32 H 1.09003 * 109.46896 * 304.79656 * 3 2 1 33 33 H 1.09002 * 109.47286 * 64.79671 * 3 2 1 34 34 H 1.09003 * 109.47223 * 300.00096 * 4 2 1 35 35 H 1.09000 * 109.47314 * 60.00466 * 4 2 1 36 36 H 1.08999 * 109.47189 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.22519 * 0.02562 * 6 5 2 38 38 H 1.08000 * 120.80876 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.03482 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.85591 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.81816 * 180.02562 * 15 14 13 42 42 H 1.08001 * 119.96484 * 179.97438 * 16 15 14 43 43 H 0.97009 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.9440 -2.0905 1.3018 7 6 2.4046 -2.7463 2.4298 8 6 2.9491 -1.9818 3.4678 9 6 3.4396 -2.6108 4.6572 10 7 3.8281 -3.1097 5.6009 11 6 3.0045 -0.5830 3.3216 12 6 3.5747 0.2485 4.4044 13 6 4.8148 -0.0724 4.9558 14 6 5.3415 0.7059 5.9654 15 6 4.6442 1.8068 6.4349 16 6 3.4154 2.1356 5.8977 17 6 2.8745 1.3663 4.8771 18 8 1.6708 1.6915 4.3439 19 6 0.9970 2.7038 4.9257 20 1 1.4551 3.2691 5.7240 21 6 -0.2842 3.0194 4.4993 22 7 -0.8802 2.2705 3.5971 23 14 -1.1636 4.5082 5.2062 24 1 -0.2833 5.1793 6.1961 25 1 -1.4896 5.4567 4.1111 26 1 -2.4168 4.0724 5.8730 27 7 2.5519 -0.0071 2.2157 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1266 1.4437 -0.0859 32 1 1.6083 1.9806 -0.8439 33 1 1.7486 1.9310 0.9298 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.5193 -2.6512 0.4822 38 1 2.3462 -3.8220 2.5068 39 1 5.3619 -0.9301 4.5932 40 1 6.3018 0.4559 6.3918 41 1 5.0639 2.4111 7.2254 42 1 2.8770 2.9951 6.2689 43 1 -1.7767 2.4910 3.2991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:01 Heat of formation + Delta-G solvation = 38.585645 kcal Electronic energy + Delta-G solvation = -27125.381811 eV Core-core repulsion = 23521.562247 eV Total energy + Delta-G solvation = -3603.819564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74320 -40.53697 -38.47968 -37.79820 -37.00939 -34.30452 -33.82031 -32.91761 -30.83484 -30.17964 -28.09384 -28.02452 -27.31934 -25.70087 -24.84266 -23.25910 -22.31990 -20.70275 -19.86868 -19.82443 -18.80451 -17.52004 -17.11300 -16.44257 -16.39585 -16.08164 -15.58911 -15.38267 -15.34000 -15.09096 -14.86129 -14.76740 -14.51593 -14.32115 -14.09265 -13.94107 -13.84408 -13.54513 -13.32454 -13.07469 -12.90987 -12.89103 -12.58066 -12.52788 -12.43142 -12.36828 -12.12916 -11.93882 -11.77414 -11.64991 -11.25658 -10.83017 -10.77585 -10.31982 -10.10402 -9.51166 -8.92104 -8.42324 -6.07481 -0.46584 0.12888 0.63376 0.74894 1.34872 1.41863 1.50693 1.57707 1.95220 2.16649 2.69435 2.82789 2.95407 3.13942 3.23316 3.43317 3.56408 3.78488 4.03699 4.11756 4.17733 4.20624 4.22396 4.25144 4.42988 4.58049 4.60821 4.67982 4.83776 4.87012 4.91965 4.95710 4.99341 5.01242 5.07947 5.11102 5.15280 5.19569 5.26473 5.36885 5.51525 5.54226 5.59266 5.67133 5.67574 5.72650 6.02022 6.12266 6.38422 7.00482 7.14830 7.80448 8.77135 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008342 B = 0.006758 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.732775 B = 4142.181540 C = 6436.412050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.020 4.020 3 C -0.122 4.122 4 C -0.130 4.130 5 C 0.161 3.839 6 C -0.174 4.174 7 C -0.014 4.014 8 C -0.111 4.111 9 C 0.284 3.716 10 N -0.446 5.446 11 C 0.233 3.767 12 C -0.160 4.160 13 C -0.052 4.052 14 C -0.200 4.200 15 C -0.054 4.054 16 C -0.252 4.252 17 C 0.148 3.852 18 O -0.187 6.187 19 C -0.421 4.421 20 H 0.096 0.904 21 C -0.008 4.008 22 N -0.892 5.892 23 Si 1.007 2.993 24 H -0.256 1.256 25 H -0.269 1.269 26 H -0.271 1.271 27 N -0.481 5.481 28 H 0.023 0.977 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -6.971 -8.536 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 C -0.180 4.180 4 C -0.187 4.187 5 C 0.021 3.979 6 C -0.193 4.193 7 C -0.041 4.041 8 C -0.117 4.117 9 C -0.031 4.031 10 N -0.122 5.122 11 C 0.094 3.906 12 C -0.162 4.162 13 C -0.071 4.071 14 C -0.218 4.218 15 C -0.072 4.072 16 C -0.271 4.271 17 C 0.094 3.906 18 O -0.090 6.090 19 C -0.497 4.497 20 H 0.113 0.887 21 C -0.208 4.208 22 N -0.527 5.527 23 Si 0.827 3.173 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.196 1.196 27 N -0.188 5.188 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.202 0.798 38 H 0.200 0.800 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.142 0.858 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.635 -6.938 -7.470 11.649 hybrid contribution -0.815 0.532 0.524 1.105 sum 4.820 -6.406 -6.946 10.608 Atomic orbital electron populations 1.21803 0.92727 1.02682 1.01650 1.19646 0.96021 0.95104 0.91280 1.21586 1.00147 0.95481 1.00756 1.21904 1.01121 1.01091 0.94613 1.21963 0.90342 0.91938 0.93618 1.22223 1.02611 0.94192 1.00288 1.21899 0.90741 1.01761 0.89729 1.17083 1.09461 0.92781 0.92408 1.25342 0.92728 0.92409 0.92600 1.81160 1.10606 1.10214 1.10236 1.19747 0.91129 0.88661 0.91090 1.17909 0.98354 0.97906 1.02011 1.20947 0.92218 0.98536 0.95377 1.21000 1.02401 0.97887 1.00536 1.21273 0.92354 0.95971 0.97613 1.21305 0.99780 1.03896 1.02133 1.19788 0.87080 0.92040 0.91645 1.84012 1.25841 1.48753 1.50410 1.21819 0.98376 1.09548 1.19938 0.88677 1.26330 0.95887 1.01632 0.96959 1.70192 1.14137 1.38480 1.29931 0.84691 0.77992 0.76272 0.78300 1.17975 1.19376 1.19596 1.67778 1.10407 1.40326 1.00316 0.95754 0.90376 0.90623 0.93344 0.91614 0.95415 0.89769 0.90338 0.92518 0.79781 0.79968 0.85484 0.83347 0.83304 0.85782 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.40 71.98 0.60 -3.17 16 2 C -0.02 -0.56 0.87 -52.93 -0.05 -0.61 16 3 C -0.12 -4.15 7.89 71.98 0.57 -3.58 16 4 C -0.13 -2.38 8.10 71.98 0.58 -1.80 16 5 C 0.16 5.35 5.57 42.63 0.24 5.58 16 6 C -0.17 -4.25 9.01 22.36 0.20 -4.05 16 7 C -0.01 -0.35 9.90 22.72 0.22 -0.13 16 8 C -0.11 -3.79 5.75 -21.00 -0.12 -3.91 16 9 C 0.28 9.83 12.66 88.33 1.12 10.95 16 10 N -0.45 -16.20 18.54 19.01 0.35 -15.85 16 11 C 0.23 9.72 6.05 42.21 0.26 9.98 16 12 C -0.16 -7.11 5.25 -19.95 -0.10 -7.22 16 13 C -0.05 -1.94 8.43 22.49 0.19 -1.75 16 14 C -0.20 -6.73 10.03 22.26 0.22 -6.51 16 15 C -0.05 -1.92 10.03 22.30 0.22 -1.70 16 16 C -0.25 -11.22 9.16 22.36 0.20 -11.01 16 17 C 0.15 7.52 6.63 22.85 0.15 7.67 16 18 O -0.19 -10.95 8.75 -20.92 -0.18 -11.13 16 19 C -0.42 -24.14 9.48 67.92 0.64 -23.50 16 20 H 0.10 5.11 5.21 -2.91 -0.02 5.09 16 21 C -0.01 -0.42 5.49 84.84 0.47 0.04 16 22 N -0.89 -52.25 13.68 21.61 0.30 -51.95 16 23 Si 1.01 42.54 29.55 68.60 2.03 44.57 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 N -0.48 -20.43 8.19 -172.15 -1.41 -21.84 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.03 1.23 7.66 -2.39 -0.02 1.21 16 34 H 0.08 1.11 6.71 -2.39 -0.02 1.09 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.19 2.74 6.75 -2.91 -0.02 2.72 16 38 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.13 4.23 7.25 -2.91 -0.02 4.21 16 40 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 41 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.12 5.55 5.64 -2.91 -0.02 5.54 16 43 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -74.02 367.32 7.74 -66.27 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 1.04 Total: 24.63 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 5.62 Total: -34.70 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -0.76 Total: -89.64 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.18 Total: -11.13 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.02 7.74 -66.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.857 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds