Wall clock time and date at job start Tue Mar 31 2020 13:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.52993 * 109.47384 * 120.00059 * 2 1 3 5 5 C 1.50700 * 109.47173 * 240.00057 * 2 1 3 6 6 C 1.38493 * 119.37426 * 74.99676 * 5 2 1 7 7 C 1.38372 * 119.53458 * 179.97438 * 6 5 2 8 8 C 1.39956 * 118.37699 * 0.02562 * 7 6 5 9 9 C 1.43198 * 120.62116 * 180.02562 * 8 7 6 10 10 N 6.80589 * 109.73387 * 239.03802 * 2 1 3 11 11 C 1.40735 * 118.76349 * 359.97438 * 8 7 6 12 12 C 1.48004 * 119.84510 * 179.97438 * 11 8 7 13 13 C 1.39592 * 120.06676 * 324.72496 * 12 11 8 14 14 C 1.37762 * 119.93934 * 179.72060 * 13 12 11 15 15 C 1.39054 * 120.06141 * 0.55376 * 14 13 12 16 16 O 1.35650 * 119.93922 * 179.69917 * 15 14 13 17 17 C 1.34808 * 117.00491 * 174.47199 * 16 15 14 18 18 H 1.08005 * 119.99553 * 5.06099 * 17 16 15 19 19 C 1.38671 * 120.00129 * 185.05718 * 17 16 15 20 20 N 1.31539 * 119.99915 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00008 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47226 * 59.99582 * 21 19 17 23 23 H 1.48502 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47023 * 299.99787 * 21 19 17 25 25 C 1.39057 * 120.12719 * 359.72262 * 15 14 13 26 26 C 1.37764 * 120.06882 * 359.97438 * 25 15 14 27 27 N 1.31718 * 119.37760 * 254.72681 * 5 2 1 28 28 H 1.08998 * 109.46752 * 60.00249 * 1 2 3 29 29 H 1.08994 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46893 * 299.99910 * 1 2 3 31 31 H 1.08995 * 109.46981 * 59.99847 * 3 2 1 32 32 H 1.09000 * 109.47145 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46923 * 299.99946 * 3 2 1 34 34 H 1.09006 * 109.47277 * 59.99614 * 4 2 1 35 35 H 1.09000 * 109.47337 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47189 * 300.00340 * 4 2 1 37 37 H 1.08000 * 120.23342 * 359.95779 * 6 5 2 38 38 H 1.07994 * 120.81053 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.02547 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.96634 * 180.25286 * 14 13 12 41 41 H 0.96996 * 120.00146 * 179.97438 * 20 19 17 42 42 H 1.08004 * 119.96475 * 179.97438 * 25 15 14 43 43 H 1.07996 * 120.03606 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0324 -0.7104 -1.2305 6 6 1.9643 -0.0731 -2.4582 7 6 2.4251 -0.7221 -3.5901 8 6 2.9480 -2.0128 -3.4503 9 6 3.4387 -2.7282 -4.5895 10 7 3.8281 -3.2958 -5.4934 11 6 2.9836 -2.5940 -2.1691 12 6 3.5311 -3.9578 -1.9939 13 6 3.3349 -4.9226 -2.9835 14 6 3.8505 -6.1896 -2.8203 15 6 4.5561 -6.5112 -1.6660 16 8 5.0575 -7.7613 -1.5052 17 6 5.8278 -7.9770 -0.4201 18 1 5.9541 -7.1969 0.3161 19 6 6.4578 -9.2004 -0.2491 20 7 6.3035 -10.1506 -1.1454 21 14 7.5246 -9.4994 1.2550 22 1 6.7039 -9.3437 2.4828 23 1 8.0797 -10.8758 1.2024 24 1 8.6377 -8.5167 1.2757 25 6 4.7482 -5.5538 -0.6759 26 6 4.2402 -4.2834 -0.8364 27 7 2.5328 -1.9235 -1.1171 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1301 -0.7208 1.2494 36 1 1.6767 -0.2074 2.1392 37 1 1.5541 0.9233 -2.5317 38 1 2.3822 -0.2444 -4.5576 39 1 2.7828 -4.6748 -3.8780 40 1 3.7025 -6.9352 -3.5875 41 1 6.7445 -11.0063 -1.0260 42 1 5.2963 -5.8066 0.2197 43 1 4.3901 -3.5401 -0.0673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:06 Heat of formation + Delta-G solvation = 53.067298 kcal Electronic energy + Delta-G solvation = -25700.466545 eV Core-core repulsion = 22097.274953 eV Total energy + Delta-G solvation = -3603.191592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79441 -39.08101 -37.57591 -36.27914 -36.04289 -32.88329 -32.42795 -31.35342 -30.31276 -28.51429 -27.50885 -27.28962 -25.61402 -24.72491 -23.47005 -21.91564 -20.95460 -19.86684 -18.91422 -18.15727 -17.14844 -16.63310 -16.15466 -15.12350 -14.92597 -14.69991 -14.45495 -14.25427 -14.11506 -13.88149 -13.72470 -13.64677 -13.42140 -13.08176 -12.92685 -12.74880 -12.52288 -12.37739 -12.31044 -12.20851 -11.82851 -11.79692 -11.52075 -11.45388 -11.13807 -11.07680 -10.98697 -10.90663 -10.75489 -10.53095 -9.95950 -9.54971 -9.41294 -9.14265 -8.79751 -8.32476 -7.23361 -6.60018 -4.16013 0.49536 1.01158 2.14177 2.23305 2.78267 3.02295 3.06824 3.08822 3.11004 3.77995 3.84023 3.86682 4.08440 4.36061 4.45530 4.61002 4.78260 4.83084 4.88351 4.96109 4.98139 5.11556 5.32716 5.34816 5.44988 5.49682 5.54442 5.59575 5.66048 5.68731 5.72742 5.78503 5.81700 5.93479 5.98784 6.08091 6.09606 6.28763 6.32905 6.43690 6.53795 6.79334 6.91235 7.09490 7.21026 7.29353 7.56633 7.64223 7.84953 7.96216 8.84428 9.51524 10.56689 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.003091 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.781342 B = 9055.652767 C =10478.676583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.141 4.141 4 C -0.130 4.130 5 C 0.177 3.823 6 C -0.198 4.198 7 C -0.019 4.019 8 C -0.101 4.101 9 C 0.264 3.736 10 N -0.414 5.414 11 C 0.265 3.735 12 C -0.180 4.180 13 C -0.046 4.046 14 C -0.192 4.192 15 C 0.170 3.830 16 O -0.163 6.163 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.853 5.853 21 Si 0.944 3.056 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.243 4.243 26 C -0.015 4.015 27 N -0.476 5.476 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.133 0.867 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 22.039 2.529 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.198 4.198 4 C -0.188 4.188 5 C 0.036 3.964 6 C -0.218 4.218 7 C -0.047 4.047 8 C -0.107 4.107 9 C -0.051 4.051 10 N -0.089 5.089 11 C 0.128 3.872 12 C -0.182 4.182 13 C -0.065 4.065 14 C -0.211 4.211 15 C 0.113 3.887 16 O -0.064 6.064 17 C -0.468 4.468 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.486 5.486 21 Si 0.768 3.232 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.262 4.262 26 C -0.034 4.034 27 N -0.185 5.185 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.853 20.264 1.770 22.184 hybrid contribution 0.344 0.450 0.165 0.590 sum -8.508 20.714 1.935 22.477 Atomic orbital electron populations 1.21870 0.92934 1.02600 1.02103 1.19575 0.95930 0.94675 0.92164 1.21948 1.01538 0.94115 1.02228 1.21707 1.01450 1.00987 0.94617 1.21370 0.91082 0.89772 0.94177 1.21733 1.05367 1.02145 0.92521 1.21471 0.92068 0.91593 0.99525 1.16950 1.08665 0.95274 0.89833 1.25191 0.94003 0.93237 0.92699 1.81273 1.08404 1.08021 1.11229 1.19938 0.88546 0.92720 0.86010 1.17825 1.10578 0.90855 0.98937 1.20728 0.97041 0.92307 0.96457 1.20063 1.06020 0.97062 0.97977 1.19527 0.91262 0.85242 0.92661 1.83936 1.55935 1.22970 1.43573 1.21418 1.25826 1.00736 0.98860 0.88593 1.25381 0.97374 0.94540 0.99156 1.70022 1.40317 1.04500 1.33790 0.85725 0.79516 0.78210 0.79735 1.19235 1.20126 1.19262 1.21112 1.09323 0.93915 1.01835 1.20761 0.92977 0.95293 0.94331 1.67749 1.11371 1.07686 1.31655 0.92393 0.92083 0.91744 0.91749 0.92227 0.92184 0.91198 0.92365 0.92952 0.84247 0.84173 0.87099 0.86061 0.91601 0.84981 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.40 37.16 0.31 -0.68 16 2 C -0.02 -0.19 0.87 -155.66 -0.14 -0.33 16 3 C -0.14 -0.90 8.08 37.16 0.30 -0.60 16 4 C -0.13 -1.22 7.79 37.15 0.29 -0.93 16 5 C 0.18 1.91 5.57 -82.55 -0.46 1.45 16 6 C -0.20 -1.76 9.04 -39.44 -0.36 -2.12 16 7 C -0.02 -0.19 9.90 -38.89 -0.39 -0.57 16 8 C -0.10 -1.36 5.74 -106.39 -0.61 -1.97 16 9 C 0.26 4.03 11.84 -22.47 -0.27 3.76 16 10 N -0.41 -7.10 18.05 41.84 0.76 -6.35 16 11 C 0.27 4.06 6.51 -82.57 -0.54 3.52 16 12 C -0.18 -3.26 5.55 -104.88 -0.58 -3.84 16 13 C -0.05 -0.88 8.36 -39.25 -0.33 -1.20 16 14 C -0.19 -4.17 9.98 -39.45 -0.39 -4.56 16 15 C 0.17 4.06 6.65 -38.98 -0.26 3.80 16 16 O -0.16 -4.57 9.75 0.42 0.00 -4.56 16 17 C -0.39 -10.67 9.48 30.89 0.29 -10.38 16 18 H 0.10 2.38 5.19 -52.48 -0.27 2.11 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.85 -24.44 13.67 55.48 0.76 -23.69 16 21 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.24 -5.18 9.15 -39.45 -0.36 -5.54 16 26 C -0.01 -0.27 9.58 -39.25 -0.38 -0.65 16 27 N -0.48 -6.62 8.58 -5.76 -0.05 -6.67 16 28 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.31 6.67 -51.93 -0.35 -0.04 16 34 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.14 0.82 6.70 -52.49 -0.35 0.47 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.11 1.98 5.66 -52.49 -0.30 1.68 16 40 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.13 2.77 5.62 -52.48 -0.30 2.47 16 43 H 0.12 1.95 7.95 -52.49 -0.42 1.54 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -30.59 365.92 -7.32 -37.90 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.32 Total: 2.81 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -3.95 Total: -19.83 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.46 Total: -36.70 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: 0.00 Total: -4.56 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.59 -7.32 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.972 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds