Wall clock time and date at job start Tue Mar 31 2020 13:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.52993 * 109.47384 * 120.00059 * 2 1 3 5 5 C 1.50700 * 109.47173 * 240.00057 * 2 1 3 6 6 C 1.38493 * 119.37426 * 74.99676 * 5 2 1 7 7 C 1.38372 * 119.53458 * 179.97438 * 6 5 2 8 8 C 1.39956 * 118.37699 * 0.02562 * 7 6 5 9 9 C 1.43198 * 120.62116 * 180.02562 * 8 7 6 10 10 N 6.80589 * 109.73387 * 239.03802 * 2 1 3 11 11 C 1.40735 * 118.76349 * 359.97438 * 8 7 6 12 12 C 1.48004 * 119.84510 * 179.97438 * 11 8 7 13 13 C 1.39592 * 120.06676 * 324.72496 * 12 11 8 14 14 C 1.37762 * 119.93934 * 179.72060 * 13 12 11 15 15 C 1.39054 * 120.06141 * 0.55376 * 14 13 12 16 16 O 1.35650 * 119.93922 * 179.69917 * 15 14 13 17 17 C 1.34808 * 117.00491 * 174.47199 * 16 15 14 18 18 H 1.08005 * 119.99553 * 5.06099 * 17 16 15 19 19 C 1.38671 * 120.00129 * 185.05718 * 17 16 15 20 20 N 1.31539 * 119.99915 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00008 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47226 * 59.99582 * 21 19 17 23 23 H 1.48502 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47023 * 299.99787 * 21 19 17 25 25 C 1.39057 * 120.12719 * 359.72262 * 15 14 13 26 26 C 1.37764 * 120.06882 * 359.97438 * 25 15 14 27 27 N 1.31718 * 119.37760 * 254.72681 * 5 2 1 28 28 H 1.08998 * 109.46752 * 60.00249 * 1 2 3 29 29 H 1.08994 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46893 * 299.99910 * 1 2 3 31 31 H 1.08995 * 109.46981 * 59.99847 * 3 2 1 32 32 H 1.09000 * 109.47145 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46923 * 299.99946 * 3 2 1 34 34 H 1.09006 * 109.47277 * 59.99614 * 4 2 1 35 35 H 1.09000 * 109.47337 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47189 * 300.00340 * 4 2 1 37 37 H 1.08000 * 120.23342 * 359.95779 * 6 5 2 38 38 H 1.07994 * 120.81053 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.02547 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.96634 * 180.25286 * 14 13 12 41 41 H 0.96996 * 120.00146 * 179.97438 * 20 19 17 42 42 H 1.08004 * 119.96475 * 179.97438 * 25 15 14 43 43 H 1.07996 * 120.03606 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0324 -0.7104 -1.2305 6 6 1.9643 -0.0731 -2.4582 7 6 2.4251 -0.7221 -3.5901 8 6 2.9480 -2.0128 -3.4503 9 6 3.4387 -2.7282 -4.5895 10 7 3.8281 -3.2958 -5.4934 11 6 2.9836 -2.5940 -2.1691 12 6 3.5311 -3.9578 -1.9939 13 6 3.3349 -4.9226 -2.9835 14 6 3.8505 -6.1896 -2.8203 15 6 4.5561 -6.5112 -1.6660 16 8 5.0575 -7.7613 -1.5052 17 6 5.8278 -7.9770 -0.4201 18 1 5.9541 -7.1969 0.3161 19 6 6.4578 -9.2004 -0.2491 20 7 6.3035 -10.1506 -1.1454 21 14 7.5246 -9.4994 1.2550 22 1 6.7039 -9.3437 2.4828 23 1 8.0797 -10.8758 1.2024 24 1 8.6377 -8.5167 1.2757 25 6 4.7482 -5.5538 -0.6759 26 6 4.2402 -4.2834 -0.8364 27 7 2.5328 -1.9235 -1.1171 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1301 -0.7208 1.2494 36 1 1.6767 -0.2074 2.1392 37 1 1.5541 0.9233 -2.5317 38 1 2.3822 -0.2444 -4.5576 39 1 2.7828 -4.6748 -3.8780 40 1 3.7025 -6.9352 -3.5875 41 1 6.7445 -11.0063 -1.0260 42 1 5.2963 -5.8066 0.2197 43 1 4.3901 -3.5401 -0.0673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:05 Heat of formation + Delta-G solvation = 36.497062 kcal Electronic energy + Delta-G solvation = -25701.185085 eV Core-core repulsion = 22097.274953 eV Total energy + Delta-G solvation = -3603.910132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83220 -40.76084 -38.81110 -37.77722 -37.04948 -34.45542 -33.76226 -32.56340 -31.97545 -29.86362 -28.08075 -28.01765 -27.45046 -25.74242 -24.71100 -23.56470 -22.35690 -20.75724 -20.08782 -19.86854 -18.87715 -17.80038 -17.11985 -16.48010 -16.27394 -16.16848 -15.79933 -15.64474 -15.44996 -14.95567 -14.83130 -14.69179 -14.59895 -14.41021 -14.27006 -14.01631 -13.88671 -13.59406 -13.41732 -13.17672 -12.96151 -12.88058 -12.70567 -12.56798 -12.47401 -12.41109 -12.17106 -11.93433 -11.77131 -11.65081 -11.31697 -10.98297 -10.80549 -10.42861 -10.07697 -9.97979 -8.89512 -8.53865 -6.21879 -0.58602 0.02367 0.45535 0.75571 1.34282 1.45387 1.51041 1.56785 1.90071 2.14097 2.60591 2.74268 2.87968 3.02408 3.11653 3.34911 3.49812 3.70592 3.91397 3.99842 4.07502 4.16143 4.17441 4.23539 4.34543 4.52055 4.57393 4.59468 4.80356 4.86748 4.90177 4.93200 4.98241 5.03419 5.05338 5.13015 5.14636 5.16569 5.26092 5.35477 5.40922 5.53236 5.53699 5.54907 5.60437 5.66298 5.93510 5.96902 6.37267 6.89592 6.95101 7.65198 8.68351 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.003091 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.781342 B = 9055.652767 C =10478.676583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.138 4.138 4 C -0.131 4.131 5 C 0.167 3.833 6 C -0.168 4.168 7 C -0.006 4.006 8 C -0.106 4.106 9 C 0.278 3.722 10 N -0.454 5.454 11 C 0.237 3.763 12 C -0.153 4.153 13 C -0.046 4.046 14 C -0.204 4.204 15 C 0.137 3.863 16 O -0.219 6.219 17 C -0.419 4.419 18 H 0.108 0.892 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.021 2.979 22 H -0.254 1.254 23 H -0.272 1.272 24 H -0.256 1.256 25 C -0.242 4.242 26 C -0.015 4.015 27 N -0.492 5.492 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.186 0.814 38 H 0.179 0.821 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.275 0.725 42 H 0.132 0.868 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 27.728 3.350 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 C -0.196 4.196 4 C -0.188 4.188 5 C 0.027 3.973 6 C -0.187 4.187 7 C -0.034 4.034 8 C -0.112 4.112 9 C -0.036 4.036 10 N -0.130 5.130 11 C 0.099 3.901 12 C -0.155 4.155 13 C -0.065 4.065 14 C -0.224 4.224 15 C 0.084 3.916 16 O -0.124 6.124 17 C -0.495 4.495 18 H 0.125 0.875 19 C -0.218 4.218 20 N -0.553 5.553 21 Si 0.839 3.161 22 H -0.178 1.178 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.261 4.261 26 C -0.034 4.034 27 N -0.200 5.200 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.203 0.797 38 H 0.196 0.804 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.496 26.030 2.586 28.185 hybrid contribution 0.522 -0.713 -0.185 0.903 sum -9.974 25.316 2.400 27.316 Atomic orbital electron populations 1.21877 0.91715 1.01883 1.03842 1.19703 0.96744 0.95578 0.90278 1.21958 1.01079 0.92439 1.04079 1.21700 1.00635 1.00128 0.96368 1.21968 0.90230 0.88821 0.96286 1.22252 1.02257 1.03322 0.90913 1.21916 0.90091 0.89666 1.01682 1.17049 1.09290 0.96797 0.88024 1.25550 0.93021 0.92512 0.92539 1.81305 1.09873 1.09123 1.12710 1.19542 0.91226 0.91844 0.87495 1.18228 1.07499 0.92374 0.97359 1.20877 0.96785 0.91399 0.97421 1.20220 1.06424 0.98197 0.97524 1.19954 0.92220 0.85247 0.94152 1.83922 1.58610 1.24988 1.44915 1.21913 1.26581 1.01637 0.99339 0.87452 1.26680 0.98600 0.93876 1.02607 1.70171 1.43018 1.05323 1.36770 0.84621 0.77619 0.78302 0.75542 1.17783 1.19600 1.18006 1.21235 1.09126 0.94528 1.01208 1.21006 0.92416 0.94618 0.95358 1.67665 1.11781 1.09279 1.31281 0.90580 0.94036 0.90190 0.90393 0.92996 0.89995 0.93553 0.93601 0.91192 0.79729 0.80402 0.85602 0.86756 0.91558 0.85004 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.40 71.98 0.60 -0.75 16 2 C -0.02 -0.28 0.87 -52.93 -0.05 -0.33 16 3 C -0.14 -1.02 8.08 71.98 0.58 -0.44 16 4 C -0.13 -2.14 7.79 71.98 0.56 -1.58 16 5 C 0.17 2.88 5.57 42.64 0.24 3.12 16 6 C -0.17 -1.94 9.04 22.36 0.20 -1.74 16 7 C -0.01 -0.09 9.90 22.72 0.22 0.13 16 8 C -0.11 -2.50 5.74 -21.01 -0.12 -2.63 16 9 C 0.28 8.00 11.84 88.33 1.05 9.05 16 10 N -0.45 -15.27 18.05 19.00 0.34 -14.93 16 11 C 0.24 6.74 6.51 42.22 0.27 7.01 16 12 C -0.15 -5.47 5.55 -20.03 -0.11 -5.58 16 13 C -0.05 -1.78 8.36 22.48 0.19 -1.59 16 14 C -0.20 -9.43 9.98 22.35 0.22 -9.21 16 15 C 0.14 7.00 6.65 22.66 0.15 7.15 16 16 O -0.22 -13.33 9.75 -21.41 -0.21 -13.54 16 17 C -0.42 -24.32 9.48 67.92 0.64 -23.68 16 18 H 0.11 5.64 5.19 -2.91 -0.02 5.62 16 19 C -0.02 -1.08 5.49 84.84 0.47 -0.61 16 20 N -0.92 -56.23 13.67 21.62 0.30 -55.93 16 21 Si 1.02 42.38 29.55 68.60 2.03 44.40 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 C -0.24 -10.76 9.15 22.35 0.20 -10.55 16 26 C -0.02 -0.57 9.58 22.49 0.22 -0.36 16 27 N -0.49 -12.36 8.58 -172.12 -1.48 -13.84 16 28 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.26 6.67 -2.39 -0.02 0.24 16 34 H 0.05 0.97 7.85 -2.38 -0.02 0.95 16 35 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.19 0.59 6.70 -2.91 -0.02 0.57 16 38 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.13 4.50 5.66 -2.91 -0.02 4.48 16 40 H 0.11 5.29 8.06 -2.91 -0.02 5.26 16 41 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.13 5.77 5.62 -2.91 -0.02 5.76 16 43 H 0.14 4.59 7.95 -2.91 -0.02 4.57 16 Total: -1.00 -74.93 365.92 7.57 -67.36 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.04 Total: 19.03 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 5.55 Total: -32.56 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -0.84 Total: -84.70 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.21 Total: -13.54 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.93 7.57 -67.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.859 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds