Wall clock time and date at job start Tue Mar 31 2020 13:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.50701 * 109.47535 * 120.00003 * 2 1 3 5 5 C 1.34218 * 126.57038 * 300.02881 * 4 2 1 6 6 N 1.36905 * 109.93654 * 179.97438 * 5 4 2 7 7 H 0.96993 * 124.98009 * 179.97438 * 6 5 4 8 8 C 1.37453 * 110.04443 * 359.97438 * 6 5 4 9 9 N 1.32728 * 132.99727 * 180.02562 * 8 6 5 10 10 C 1.31408 * 121.85934 * 180.02562 * 9 8 6 11 11 C 1.39782 * 121.40707 * 359.97438 * 10 9 8 12 12 C 1.48346 * 120.42870 * 180.02562 * 11 10 9 13 13 C 1.39433 * 120.04737 * 179.72210 * 12 11 10 14 14 C 1.37845 * 119.94330 * 179.74464 * 13 12 11 15 15 C 1.38994 * 120.05283 * 0.54652 * 14 13 12 16 16 O 1.35710 * 119.95096 * 179.72054 * 15 14 13 17 17 C 1.34808 * 117.00254 * 174.43067 * 16 15 14 18 18 H 1.08003 * 120.00180 * 5.06199 * 17 16 15 19 19 C 1.38638 * 120.00358 * 185.05775 * 17 16 15 20 20 N 1.31569 * 119.99777 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00484 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47304 * 90.00067 * 21 19 17 23 23 H 1.48505 * 109.47353 * 210.00548 * 21 19 17 24 24 H 1.48504 * 109.46954 * 329.99821 * 21 19 17 25 25 C 1.38994 * 120.10035 * 359.70729 * 15 14 13 26 26 C 1.37845 * 120.05643 * 0.02562 * 25 15 14 27 27 C 1.39355 * 119.14046 * 0.02562 * 11 10 9 28 28 C 1.39527 * 117.95494 * 359.73531 * 27 11 10 29 29 H 1.09004 * 109.46953 * 299.99994 * 1 2 3 30 30 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47373 * 60.00098 * 1 2 3 32 32 H 1.09004 * 109.47667 * 240.00224 * 2 1 3 33 33 H 1.08994 * 109.47771 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47087 * 300.00367 * 3 2 1 35 35 H 1.09004 * 109.47089 * 59.99537 * 3 2 1 36 36 H 1.08002 * 125.02727 * 359.97438 * 5 4 2 37 37 H 1.08002 * 119.29769 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.02240 * 359.97438 * 13 12 11 39 39 H 1.08001 * 119.97182 * 180.27330 * 14 13 12 40 40 H 0.96992 * 119.99951 * 180.02562 * 20 19 17 41 41 H 1.08004 * 119.97036 * 180.02562 * 25 15 14 42 42 H 1.07999 * 120.02366 * 180.02562 * 26 25 15 43 43 H 1.07996 * 121.02454 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7904 -0.3691 2.5057 6 7 2.4122 -1.2489 3.3505 7 1 2.3817 -1.2058 4.3190 8 6 3.0860 -2.2023 2.6250 9 7 3.8251 -3.2488 2.9718 10 6 4.3803 -4.0334 2.0757 11 6 4.2188 -3.8037 0.7064 12 6 4.8550 -4.7037 -0.2865 13 6 4.6839 -4.4706 -1.6505 14 6 5.2804 -5.3052 -2.5713 15 6 6.0425 -6.3849 -2.1410 16 8 6.6242 -7.2085 -3.0494 17 6 7.4430 -8.1665 -2.5708 18 1 7.5473 -8.3049 -1.5048 19 6 8.1513 -8.9744 -3.4471 20 7 8.0247 -8.8056 -4.7457 21 14 9.2855 -10.3023 -2.7840 22 1 8.5253 -11.5678 -2.6236 23 1 10.4068 -10.5154 -3.7341 24 1 9.8262 -9.8793 -1.4672 25 6 6.2101 -6.6223 -0.7818 26 6 5.6201 -5.7873 0.1428 27 6 3.4524 -2.7184 0.2861 28 6 2.8732 -1.9089 1.2639 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.1936 0.4748 2.8191 37 1 4.9741 -4.8736 2.4043 38 1 4.0876 -3.6347 -1.9852 39 1 5.1518 -5.1224 -3.6280 40 1 8.5199 -9.3710 -5.3588 41 1 6.8031 -7.4617 -0.4497 42 1 5.7510 -5.9720 1.1988 43 1 3.3080 -2.5124 -0.7641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:08 Heat of formation + Delta-G solvation = 54.041917 kcal Electronic energy + Delta-G solvation = -25183.463511 eV Core-core repulsion = 21580.314182 eV Total energy + Delta-G solvation = -3603.149330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53781 -39.20164 -38.03691 -36.41201 -35.59024 -32.78226 -32.25521 -30.83960 -30.22939 -28.58201 -27.50492 -27.30326 -25.46213 -23.83522 -22.91064 -22.73197 -21.57634 -20.51468 -18.83332 -18.30329 -17.81915 -17.22449 -16.77062 -15.83096 -15.08926 -15.05030 -14.57515 -14.46931 -14.28356 -14.14189 -13.97234 -13.70251 -13.35410 -13.23920 -13.04139 -12.68892 -12.53725 -12.52802 -12.30976 -12.26286 -11.71861 -11.49161 -11.47122 -11.31595 -11.01380 -10.99707 -10.82474 -10.70894 -10.47759 -10.12639 -9.45513 -9.18389 -9.01452 -8.44399 -8.28132 -7.99119 -6.90934 -6.53402 -4.09845 1.04048 1.20980 2.17810 2.51190 2.60159 2.77504 3.09603 3.10549 3.15243 3.90710 4.02531 4.45048 4.58090 4.60112 4.63167 4.87239 4.99348 5.04625 5.06123 5.13085 5.19082 5.23284 5.27811 5.42448 5.45258 5.53554 5.63586 5.64927 5.71257 5.79480 5.91199 5.96037 6.08727 6.11265 6.14870 6.18529 6.45274 6.50522 6.53856 6.62226 6.84127 6.94029 7.04640 7.19776 7.26787 7.32104 7.36562 7.72346 7.91649 8.11837 8.91872 9.60386 10.63949 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002379 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.567961 B =11768.508108 C =12715.957182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 C -0.142 4.142 4 C -0.155 4.155 5 C 0.057 3.943 6 N -0.585 5.585 7 H 0.416 0.584 8 C 0.266 3.734 9 N -0.497 5.497 10 C 0.134 3.866 11 C -0.075 4.075 12 C -0.148 4.148 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.158 3.842 16 O -0.171 6.171 17 C -0.392 4.392 18 H 0.095 0.905 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.233 4.233 26 C -0.055 4.055 27 C -0.047 4.047 28 C -0.135 4.135 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 16.510 12.213 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.042 4.042 3 C -0.200 4.200 4 C -0.163 4.163 5 C -0.069 4.069 6 N -0.191 5.191 7 H 0.253 0.747 8 C 0.034 3.966 9 N -0.209 5.209 10 C -0.032 4.032 11 C -0.078 4.078 12 C -0.150 4.150 13 C -0.077 4.077 14 C -0.210 4.210 15 C 0.103 3.897 16 O -0.073 6.073 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.252 4.252 26 C -0.074 4.074 27 C -0.074 4.074 28 C -0.142 4.142 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.188 0.812 37 H 0.178 0.822 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.148 0.852 42 H 0.130 0.870 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.845 16.287 12.773 23.848 hybrid contribution 0.472 -0.549 0.045 0.726 sum -11.372 15.738 12.818 23.266 Atomic orbital electron populations 1.21852 0.94713 1.01937 1.01456 1.19461 0.95072 0.94998 0.94680 1.21853 1.01366 0.95284 1.01455 1.20114 1.04585 0.97649 0.94000 1.21449 1.00367 0.95896 0.89176 1.41403 1.45002 1.24012 1.08701 0.74710 1.18361 0.97633 0.92208 0.88435 1.66378 1.10731 1.04236 1.39576 1.22555 0.96056 0.96539 0.88019 1.19495 0.98617 0.95746 0.93980 1.17994 1.06297 0.98857 0.91860 1.20664 0.97553 0.97753 0.91733 1.20140 1.04576 0.96721 0.99579 1.19485 0.91692 0.89545 0.88943 1.83956 1.52784 1.38333 1.32212 1.21387 1.21429 1.10257 0.93677 0.88796 1.25332 0.97601 0.98562 0.95030 1.70040 1.39728 1.37944 1.01497 0.85685 0.79072 0.79813 0.78745 1.19775 1.20179 1.19067 1.21097 1.07683 1.03735 0.92682 1.20778 0.95016 0.93273 0.98288 1.20927 0.94844 0.92717 0.98867 1.19665 1.02906 0.98338 0.93252 0.92885 0.92541 0.92552 0.90446 0.92536 0.92559 0.92881 0.81231 0.82208 0.86775 0.86242 0.91842 0.85223 0.87014 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.07 37.15 0.34 -0.70 16 2 C -0.02 -0.20 3.31 -91.77 -0.30 -0.50 16 3 C -0.14 -1.04 9.07 37.16 0.34 -0.71 16 4 C -0.16 -1.67 5.05 -102.74 -0.52 -2.19 16 5 C 0.06 0.50 11.19 -16.70 -0.19 0.32 16 6 N -0.58 -6.00 6.05 -12.11 -0.07 -6.07 16 7 H 0.42 3.13 8.96 -40.82 -0.37 2.76 16 8 C 0.27 3.73 8.42 -155.57 -1.31 2.42 16 9 N -0.50 -7.58 10.37 -11.99 -0.12 -7.70 16 10 C 0.13 2.02 10.57 -17.16 -0.18 1.84 16 11 C -0.07 -1.17 5.89 -104.74 -0.62 -1.79 16 12 C -0.15 -2.57 5.88 -104.85 -0.62 -3.19 16 13 C -0.06 -1.03 9.43 -39.28 -0.37 -1.40 16 14 C -0.19 -3.91 9.98 -39.44 -0.39 -4.30 16 15 C 0.16 3.71 6.65 -39.02 -0.26 3.45 16 16 O -0.17 -4.73 9.75 0.24 0.00 -4.73 16 17 C -0.39 -10.63 9.48 30.88 0.29 -10.34 16 18 H 0.09 2.34 5.19 -52.48 -0.27 2.07 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 21 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.23 -4.88 9.15 -39.44 -0.36 -5.24 16 26 C -0.06 -0.99 9.43 -39.29 -0.37 -1.36 16 27 C -0.05 -0.68 9.57 -38.69 -0.37 -1.05 16 28 C -0.13 -1.86 6.36 -105.12 -0.67 -2.53 16 29 H 0.05 0.33 8.02 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.33 8.02 -51.93 -0.42 -0.09 16 36 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.16 2.09 6.19 -52.49 -0.32 1.77 16 38 H 0.11 1.66 6.26 -52.49 -0.33 1.33 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.69 5.62 -52.48 -0.30 2.40 16 42 H 0.11 1.65 6.21 -52.49 -0.33 1.33 16 43 H 0.13 1.70 6.31 -52.49 -0.33 1.37 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.73 360.64 -9.85 -41.59 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.17 Total: 6.65 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -5.66 Total: -26.31 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.56 Total: -37.62 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.73 -9.85 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.627 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds