Wall clock time and date at job start Tue Mar 31 2020 13:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.50701 * 109.47535 * 120.00003 * 2 1 3 5 5 C 1.34218 * 126.57038 * 300.02881 * 4 2 1 6 6 N 1.36905 * 109.93654 * 179.97438 * 5 4 2 7 7 H 0.96993 * 124.98009 * 179.97438 * 6 5 4 8 8 C 1.37453 * 110.04443 * 359.97438 * 6 5 4 9 9 N 1.32728 * 132.99727 * 180.02562 * 8 6 5 10 10 C 1.31408 * 121.85934 * 180.02562 * 9 8 6 11 11 C 1.39782 * 121.40707 * 359.97438 * 10 9 8 12 12 C 1.48346 * 120.42870 * 180.02562 * 11 10 9 13 13 C 1.39433 * 120.04737 * 179.72210 * 12 11 10 14 14 C 1.37845 * 119.94330 * 179.74464 * 13 12 11 15 15 C 1.38994 * 120.05283 * 0.54652 * 14 13 12 16 16 O 1.35710 * 119.95096 * 179.72054 * 15 14 13 17 17 C 1.34808 * 117.00254 * 174.43067 * 16 15 14 18 18 H 1.08003 * 120.00180 * 5.06199 * 17 16 15 19 19 C 1.38638 * 120.00358 * 185.05775 * 17 16 15 20 20 N 1.31569 * 119.99777 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00484 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47304 * 90.00067 * 21 19 17 23 23 H 1.48505 * 109.47353 * 210.00548 * 21 19 17 24 24 H 1.48504 * 109.46954 * 329.99821 * 21 19 17 25 25 C 1.38994 * 120.10035 * 359.70729 * 15 14 13 26 26 C 1.37845 * 120.05643 * 0.02562 * 25 15 14 27 27 C 1.39355 * 119.14046 * 0.02562 * 11 10 9 28 28 C 1.39527 * 117.95494 * 359.73531 * 27 11 10 29 29 H 1.09004 * 109.46953 * 299.99994 * 1 2 3 30 30 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47373 * 60.00098 * 1 2 3 32 32 H 1.09004 * 109.47667 * 240.00224 * 2 1 3 33 33 H 1.08994 * 109.47771 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47087 * 300.00367 * 3 2 1 35 35 H 1.09004 * 109.47089 * 59.99537 * 3 2 1 36 36 H 1.08002 * 125.02727 * 359.97438 * 5 4 2 37 37 H 1.08002 * 119.29769 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.02240 * 359.97438 * 13 12 11 39 39 H 1.08001 * 119.97182 * 180.27330 * 14 13 12 40 40 H 0.96992 * 119.99951 * 180.02562 * 20 19 17 41 41 H 1.08004 * 119.97036 * 180.02562 * 25 15 14 42 42 H 1.07999 * 120.02366 * 180.02562 * 26 25 15 43 43 H 1.07996 * 121.02454 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7904 -0.3691 2.5057 6 7 2.4122 -1.2489 3.3505 7 1 2.3817 -1.2058 4.3190 8 6 3.0860 -2.2023 2.6250 9 7 3.8251 -3.2488 2.9718 10 6 4.3803 -4.0334 2.0757 11 6 4.2188 -3.8037 0.7064 12 6 4.8550 -4.7037 -0.2865 13 6 4.6839 -4.4706 -1.6505 14 6 5.2804 -5.3052 -2.5713 15 6 6.0425 -6.3849 -2.1410 16 8 6.6242 -7.2085 -3.0494 17 6 7.4430 -8.1665 -2.5708 18 1 7.5473 -8.3049 -1.5048 19 6 8.1513 -8.9744 -3.4471 20 7 8.0247 -8.8056 -4.7457 21 14 9.2855 -10.3023 -2.7840 22 1 8.5253 -11.5678 -2.6236 23 1 10.4068 -10.5154 -3.7341 24 1 9.8262 -9.8793 -1.4672 25 6 6.2101 -6.6223 -0.7818 26 6 5.6201 -5.7873 0.1428 27 6 3.4524 -2.7184 0.2861 28 6 2.8732 -1.9089 1.2639 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.1936 0.4748 2.8191 37 1 4.9741 -4.8736 2.4043 38 1 4.0876 -3.6347 -1.9852 39 1 5.1518 -5.1224 -3.6280 40 1 8.5199 -9.3710 -5.3588 41 1 6.8031 -7.4617 -0.4497 42 1 5.7510 -5.9720 1.1988 43 1 3.3080 -2.5124 -0.7641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:07 Heat of formation + Delta-G solvation = 37.100465 kcal Electronic energy + Delta-G solvation = -25184.198148 eV Core-core repulsion = 21580.314182 eV Total energy + Delta-G solvation = -3603.883966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50394 -40.81118 -39.29518 -37.87252 -36.35536 -34.40850 -33.68839 -32.21369 -31.62338 -29.47389 -28.92165 -27.84576 -27.30853 -25.02905 -24.16424 -23.50120 -23.04373 -21.91840 -20.00088 -19.57242 -18.99937 -18.87122 -17.82526 -17.15085 -16.37998 -16.16275 -16.03000 -15.91467 -15.54591 -15.42068 -15.10572 -14.85907 -14.61054 -14.27175 -14.03531 -14.02648 -13.73072 -13.64565 -13.56548 -13.46263 -12.98020 -12.83524 -12.55619 -12.51874 -12.30962 -12.11321 -12.00428 -11.97916 -11.51722 -11.26924 -11.19065 -10.79450 -10.33026 -9.83898 -9.78256 -8.88689 -8.47921 -8.39219 -6.13864 -0.13425 0.09801 0.59322 1.07039 1.36778 1.46643 1.54093 1.74752 1.90928 2.18180 2.72345 3.00382 3.28166 3.44596 3.53447 3.72973 3.74192 3.87441 3.99879 4.07490 4.18231 4.27929 4.35512 4.46127 4.47566 4.53917 4.62641 4.70177 4.78139 4.92726 4.93194 4.98458 5.10956 5.11723 5.16691 5.22121 5.28608 5.32806 5.42343 5.47794 5.52863 5.59808 5.68568 5.72971 5.79565 6.01986 6.03057 6.14685 6.46283 6.97222 7.06541 7.76545 8.75372 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002379 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.567961 B =11768.508108 C =12715.957182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 C -0.139 4.139 4 C -0.172 4.172 5 C 0.079 3.921 6 N -0.574 5.574 7 H 0.430 0.570 8 C 0.250 3.750 9 N -0.511 5.511 10 C 0.129 3.871 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.057 4.057 14 C -0.198 4.198 15 C 0.118 3.882 16 O -0.227 6.227 17 C -0.413 4.413 18 H 0.105 0.895 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.237 4.237 26 C -0.057 4.057 27 C -0.043 4.043 28 C -0.154 4.154 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.216 0.784 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 19.342 15.496 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 C -0.196 4.196 4 C -0.179 4.179 5 C -0.047 4.047 6 N -0.181 5.181 7 H 0.270 0.730 8 C 0.017 3.983 9 N -0.223 5.223 10 C -0.037 4.037 11 C -0.104 4.104 12 C -0.122 4.122 13 C -0.074 4.074 14 C -0.217 4.217 15 C 0.068 3.932 16 O -0.133 6.133 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.257 4.257 26 C -0.075 4.075 27 C -0.069 4.069 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.819 19.177 16.123 28.612 hybrid contribution 0.706 -0.938 -0.649 1.342 sum -13.113 18.239 15.474 27.277 Atomic orbital electron populations 1.21827 0.93524 1.01460 1.02800 1.19487 0.95967 0.95436 0.93277 1.21829 1.00466 0.94521 1.02800 1.20391 1.04795 0.97071 0.95681 1.22175 0.98601 0.95662 0.88229 1.41557 1.43865 1.23025 1.09700 0.73005 1.18733 0.97658 0.92480 0.89417 1.66418 1.11377 1.04896 1.39653 1.22754 0.96168 0.97010 0.87762 1.19364 1.00556 0.96621 0.93870 1.18323 1.03726 0.97852 0.92265 1.21005 0.97066 0.97894 0.91485 1.20368 1.04450 0.96531 1.00396 1.20015 0.92885 0.90514 0.89834 1.83929 1.55174 1.40237 1.33921 1.21861 1.21920 1.10708 0.94431 0.87797 1.26593 0.99177 1.01016 0.95203 1.70184 1.42179 1.40190 1.03123 0.84589 0.76700 0.76477 0.78493 1.18801 1.19680 1.17562 1.21205 1.07934 1.04237 0.92281 1.21109 0.94233 0.92608 0.99532 1.21143 0.93818 0.92122 0.99837 1.20028 1.03490 0.99487 0.93092 0.91202 0.93892 0.91637 0.91778 0.93897 0.91645 0.91196 0.76760 0.80856 0.83419 0.86296 0.91788 0.85668 0.83570 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.07 71.98 0.65 -0.90 16 2 C -0.02 -0.32 3.31 -11.54 -0.04 -0.36 16 3 C -0.14 -1.56 9.07 71.98 0.65 -0.90 16 4 C -0.17 -3.09 5.05 -18.64 -0.09 -3.19 16 5 C 0.08 1.03 11.19 82.98 0.93 1.95 16 6 N -0.57 -9.54 6.05 -192.23 -1.16 -10.71 16 7 H 0.43 4.75 8.96 -92.71 -0.83 3.91 16 8 C 0.25 6.34 8.42 133.91 1.13 7.47 16 9 N -0.51 -14.45 10.37 -191.83 -1.99 -16.44 16 10 C 0.13 3.61 10.57 85.13 0.90 4.51 16 11 C -0.10 -2.95 5.89 -19.94 -0.12 -3.07 16 12 C -0.12 -4.00 5.88 -20.01 -0.12 -4.12 16 13 C -0.06 -1.94 9.43 22.46 0.21 -1.73 16 14 C -0.20 -8.38 9.98 22.36 0.22 -8.16 16 15 C 0.12 5.84 6.65 22.63 0.15 5.99 16 16 O -0.23 -13.50 9.75 -22.07 -0.22 -13.72 16 17 C -0.41 -23.80 9.48 67.92 0.64 -23.15 16 18 H 0.10 5.46 5.19 -2.91 -0.02 5.44 16 19 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 20 N -0.92 -56.07 13.67 21.61 0.30 -55.78 16 21 Si 1.02 42.50 29.55 68.60 2.03 44.52 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 25 C -0.24 -10.21 9.15 22.36 0.20 -10.00 16 26 C -0.06 -1.98 9.43 22.46 0.21 -1.77 16 27 C -0.04 -1.16 9.57 22.85 0.22 -0.94 16 28 C -0.15 -3.85 6.36 -20.19 -0.13 -3.98 16 29 H 0.07 0.54 8.02 -2.39 -0.02 0.52 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 0.55 8.02 -2.39 -0.02 0.53 16 36 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.17 4.14 6.19 -2.91 -0.02 4.12 16 38 H 0.15 4.00 6.26 -2.91 -0.02 3.99 16 39 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.13 5.40 5.62 -2.91 -0.02 5.38 16 42 H 0.15 4.01 6.21 -2.91 -0.02 3.99 16 43 H 0.14 3.37 6.31 -2.91 -0.02 3.35 16 Total: -1.00 -74.76 360.64 5.29 -69.47 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.23 Total: 25.78 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 6.10 Total: -43.13 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.86 Total: -82.93 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.22 Total: -13.72 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -74.76 5.29 -69.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.571 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds