Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 C 1.52996 * 109.47345 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47686 * 179.97438 * 4 3 2 6 6 C 1.37043 * 119.99728 * 270.00649 * 5 4 3 7 7 H 1.08002 * 119.99373 * 139.31312 * 6 5 4 8 8 C 1.38876 * 120.00217 * 319.30629 * 6 5 4 9 9 N 1.31484 * 119.99970 * 164.35902 * 8 6 5 10 10 Si 1.86797 * 119.99919 * 344.35809 * 8 6 5 11 11 H 1.48507 * 109.47027 * 89.65967 * 10 8 6 12 12 H 1.48502 * 109.47109 * 209.65555 * 10 8 6 13 13 H 1.48501 * 109.47569 * 329.65922 * 10 8 6 14 14 C 1.34773 * 119.99610 * 90.00014 * 5 4 3 15 15 S 1.71198 * 120.00264 * 5.30262 * 14 5 4 16 16 N 1.34783 * 119.99789 * 185.30857 * 14 5 4 17 17 C 1.40071 * 120.00251 * 80.00104 * 16 14 5 18 18 C 1.38740 * 120.09076 * 356.86021 * 17 16 14 19 19 C 1.38192 * 119.98027 * 179.97438 * 18 17 16 20 20 C 1.50706 * 119.91608 * 179.97438 * 19 18 17 21 21 C 1.38280 * 120.16851 * 359.74398 * 19 18 17 22 22 C 1.38256 * 120.17919 * 0.50963 * 21 19 18 23 23 C 1.38544 * 120.01383 * 359.49231 * 22 21 19 24 24 O 1.35987 * 120.08042 * 180.23182 * 23 22 21 25 25 C 1.42897 * 116.99768 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46695 * 60.00023 * 1 2 3 27 27 H 1.09000 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47502 * 300.00770 * 1 2 3 29 29 H 1.08992 * 109.47201 * 239.99307 * 2 1 3 30 30 H 1.08999 * 109.46548 * 119.99282 * 2 1 3 31 31 H 1.09004 * 109.47007 * 59.99753 * 3 2 1 32 32 H 1.09000 * 109.46833 * 299.99685 * 3 2 1 33 33 H 1.09005 * 109.46627 * 59.99672 * 4 3 2 34 34 H 1.09005 * 109.47037 * 300.00286 * 4 3 2 35 35 H 0.96999 * 119.99673 * 179.97438 * 9 8 6 36 36 H 0.97002 * 119.99631 * 260.00357 * 16 14 5 37 37 H 1.08000 * 120.00699 * 359.95350 * 18 17 16 38 38 H 1.08999 * 109.46850 * 89.99755 * 20 19 18 39 39 H 1.08994 * 109.47221 * 209.99549 * 20 19 18 40 40 H 1.08999 * 109.46852 * 330.00506 * 20 19 18 41 41 H 1.07993 * 119.90897 * 180.25489 * 21 19 18 42 42 H 1.07991 * 119.99365 * 179.76578 * 22 21 19 43 43 H 1.09005 * 109.46652 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46909 * 299.99623 * 25 24 23 45 45 H 1.09000 * 109.47483 * 60.00165 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2872 3.4690 -1.1871 7 1 4.0071 4.5059 -1.3008 8 6 4.8793 2.7898 -2.2439 9 7 4.8238 3.2882 -3.4593 10 14 5.7545 1.1680 -1.9385 11 1 4.7873 0.0497 -2.0774 12 1 6.8487 1.0019 -2.9286 13 1 6.3233 1.1630 -0.5667 14 6 4.2826 3.4597 1.1670 15 16 4.1275 2.6130 2.6468 16 7 4.6287 4.7623 1.1689 17 6 3.6459 5.7483 1.0141 18 6 2.3251 5.3855 0.7935 19 6 1.3573 6.3602 0.6416 20 6 -0.0769 5.9644 0.4015 21 6 1.7007 7.6977 0.7141 22 6 3.0157 8.0670 0.9284 23 6 3.9921 7.0961 1.0817 24 8 5.2851 7.4578 1.2973 25 6 5.5663 8.8576 1.3536 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5137 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 5.2377 2.8139 -4.1973 36 1 5.5584 5.0169 1.2774 37 1 2.0535 4.3415 0.7402 38 1 -0.5900 5.8606 1.3576 39 1 -0.5707 6.7318 -0.1945 40 1 -0.1071 5.0143 -0.1319 41 1 0.9404 8.4558 0.5989 42 1 3.2812 9.1125 0.9807 43 1 6.6316 9.0074 1.5296 44 1 5.2857 9.3229 0.4086 45 1 4.9965 9.3104 2.1650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249663924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = 5.643839 kcal Electronic energy + Delta-G solvation = -26092.792001 eV Core-core repulsion = 22622.987925 eV Total energy + Delta-G solvation = -3469.804076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16938 -38.75442 -37.23886 -35.59937 -34.19778 -32.85839 -31.41963 -29.70745 -28.56733 -27.64327 -26.37011 -25.53841 -23.99116 -22.37471 -21.15187 -20.82874 -20.64320 -18.01681 -17.93190 -16.77701 -16.71060 -16.40026 -15.44863 -15.42645 -15.10921 -14.92661 -14.18625 -13.86453 -13.77532 -13.55385 -13.40442 -13.38499 -13.20626 -12.81833 -12.38555 -12.28226 -12.03751 -11.85807 -11.68821 -11.66949 -11.20289 -11.01825 -10.96297 -10.87079 -10.72361 -10.66326 -10.55562 -10.40244 -10.17296 -9.73318 -9.65003 -9.20731 -8.02651 -7.24139 -7.17007 -6.91790 -6.36635 -4.76243 1.76914 1.79490 1.96475 2.70766 2.86743 2.94357 3.15319 3.55373 3.56684 3.90612 4.22449 4.33532 4.46094 5.07154 5.18757 5.22576 5.25763 5.27177 5.29729 5.38254 5.48761 5.54513 5.58469 5.64071 5.79135 5.89395 5.91685 5.94632 6.00078 6.08529 6.09930 6.18601 6.25491 6.27087 6.38145 6.48249 6.59510 6.64052 6.66409 6.75855 7.02040 7.16861 7.35173 7.48386 7.68264 7.95688 8.13621 8.35307 8.60955 9.81694 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.005638 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.850332 B = 4965.031018 C = 5824.082461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.119 4.119 4 C 0.064 3.936 5 N -0.324 5.324 6 C -0.335 4.335 7 H 0.127 0.873 8 C 0.079 3.921 9 N -0.804 5.804 10 Si 0.885 3.115 11 H -0.258 1.258 12 H -0.275 1.275 13 H -0.248 1.248 14 C 0.469 3.531 15 S -0.761 6.761 16 N -0.659 5.659 17 C 0.210 3.790 18 C -0.139 4.139 19 C -0.077 4.077 20 C -0.107 4.107 21 C -0.141 4.141 22 C -0.166 4.166 23 C 0.058 3.942 24 O -0.320 6.320 25 C 0.035 3.965 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.291 0.709 36 H 0.416 0.584 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 5.058 0.136 6.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.158 4.158 4 C -0.059 4.059 5 N -0.002 5.002 6 C -0.470 4.470 7 H 0.145 0.855 8 C -0.139 4.139 9 N -0.431 5.431 10 Si 0.710 3.290 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.171 1.171 14 C 0.114 3.886 15 S -0.628 6.628 16 N -0.290 5.290 17 C 0.107 3.893 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.185 4.185 23 C 0.010 3.990 24 O -0.234 6.234 25 C -0.061 4.061 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.256 0.744 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.708 4.121 0.670 6.292 hybrid contribution 0.866 0.256 -1.024 1.365 sum -3.841 4.377 -0.353 5.835 Atomic orbital electron populations 1.21728 0.95801 1.01144 1.01849 1.21419 0.95852 0.96481 1.02009 1.21718 0.93560 0.97420 1.03080 1.22592 0.95996 0.82867 1.04471 1.44494 1.38970 1.11308 1.05437 1.19847 1.40183 0.99830 0.87141 0.85548 1.25539 0.94912 0.99324 0.94160 1.69714 1.35037 1.39158 0.99238 0.86780 0.79917 0.81431 0.80838 1.18484 1.20139 1.17125 1.21032 0.93518 0.85748 0.88326 1.92578 1.78319 1.70059 1.21793 1.40964 1.09014 1.00938 1.78116 1.17102 0.89271 0.85033 0.97864 1.20417 0.90248 0.99834 1.05724 1.19493 0.95415 0.92730 1.00132 1.20695 0.92415 1.01748 1.01504 1.20468 0.95273 0.95159 1.05240 1.20840 0.93328 0.97915 1.06417 1.18319 0.83828 0.91529 1.05364 1.85988 1.23887 1.25391 1.88100 1.22918 1.01951 0.80371 1.00845 0.92863 0.93037 0.92620 0.92306 0.91526 0.90724 0.91383 0.90658 0.86747 0.89774 0.74370 0.85652 0.91581 0.91928 0.91727 0.86543 0.85855 0.88781 0.93090 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.12 -2.12 5.54 -26.73 -0.15 -2.27 16 4 C 0.06 1.31 3.99 -4.04 -0.02 1.29 16 5 N -0.32 -7.23 1.97 -116.74 -0.23 -7.46 16 6 C -0.33 -7.87 9.17 -14.99 -0.14 -8.01 16 7 H 0.13 3.25 6.90 -52.49 -0.36 2.89 16 8 C 0.08 1.82 5.39 -17.46 -0.09 1.73 16 9 N -0.80 -19.26 13.96 55.49 0.77 -18.49 16 10 Si 0.89 18.18 24.95 -169.99 -4.24 13.94 16 11 H -0.26 -4.97 6.52 56.52 0.37 -4.60 16 12 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.25 -5.40 7.11 56.52 0.40 -5.00 16 14 C 0.47 10.86 5.37 -86.92 -0.47 10.39 16 15 S -0.76 -19.40 28.78 -107.50 -3.09 -22.49 16 16 N -0.66 -14.26 4.51 -11.29 -0.05 -14.31 16 17 C 0.21 4.27 5.69 -83.51 -0.48 3.79 16 18 C -0.14 -2.74 8.65 -39.41 -0.34 -3.08 16 19 C -0.08 -1.28 5.88 -104.62 -0.62 -1.90 16 20 C -0.11 -1.45 10.01 36.01 0.36 -1.09 16 21 C -0.14 -2.14 9.69 -39.56 -0.38 -2.52 16 22 C -0.17 -2.55 9.04 -39.46 -0.36 -2.90 16 23 C 0.06 1.04 6.70 -39.07 -0.26 0.77 16 24 O -0.32 -5.31 9.75 -19.70 -0.19 -5.50 16 25 C 0.03 0.40 9.81 101.05 0.99 1.39 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.52 3.01 -51.93 -0.16 1.36 16 34 H 0.11 2.46 6.46 -51.93 -0.34 2.13 16 35 H 0.29 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.42 8.72 8.18 -40.82 -0.33 8.39 16 37 H 0.13 2.66 6.88 -52.49 -0.36 2.30 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 45 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -28.60 374.30 -10.04 -38.64 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -6.91 Total: 15.85 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.73 Total: -5.82 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.49 Total: -40.25 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.19 Total: -5.50 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -4.24 Total: 13.94 kcal Atomic # 16 Polarization: -19.40 SS G_CDS: -3.09 Total: -22.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.60 -10.04 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249663924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.280 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds