Wall clock time and date at job start Tue Mar 31 2020 14:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 C 1.52996 * 109.47345 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47686 * 179.97438 * 4 3 2 6 6 C 1.37043 * 119.99728 * 270.00649 * 5 4 3 7 7 H 1.08002 * 119.99373 * 139.31312 * 6 5 4 8 8 C 1.38876 * 120.00217 * 319.30629 * 6 5 4 9 9 N 1.31484 * 119.99970 * 164.35902 * 8 6 5 10 10 Si 1.86797 * 119.99919 * 344.35809 * 8 6 5 11 11 H 1.48507 * 109.47027 * 89.65967 * 10 8 6 12 12 H 1.48502 * 109.47109 * 209.65555 * 10 8 6 13 13 H 1.48501 * 109.47569 * 329.65922 * 10 8 6 14 14 C 1.34773 * 119.99610 * 90.00014 * 5 4 3 15 15 S 1.71198 * 120.00264 * 5.30262 * 14 5 4 16 16 N 1.34783 * 119.99789 * 185.30857 * 14 5 4 17 17 C 1.40071 * 120.00251 * 80.00104 * 16 14 5 18 18 C 1.38740 * 120.09076 * 356.86021 * 17 16 14 19 19 C 1.38192 * 119.98027 * 179.97438 * 18 17 16 20 20 C 1.50706 * 119.91608 * 179.97438 * 19 18 17 21 21 C 1.38280 * 120.16851 * 359.74398 * 19 18 17 22 22 C 1.38256 * 120.17919 * 0.50963 * 21 19 18 23 23 C 1.38544 * 120.01383 * 359.49231 * 22 21 19 24 24 O 1.35987 * 120.08042 * 180.23182 * 23 22 21 25 25 C 1.42897 * 116.99768 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46695 * 60.00023 * 1 2 3 27 27 H 1.09000 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47502 * 300.00770 * 1 2 3 29 29 H 1.08992 * 109.47201 * 239.99307 * 2 1 3 30 30 H 1.08999 * 109.46548 * 119.99282 * 2 1 3 31 31 H 1.09004 * 109.47007 * 59.99753 * 3 2 1 32 32 H 1.09000 * 109.46833 * 299.99685 * 3 2 1 33 33 H 1.09005 * 109.46627 * 59.99672 * 4 3 2 34 34 H 1.09005 * 109.47037 * 300.00286 * 4 3 2 35 35 H 0.96999 * 119.99673 * 179.97438 * 9 8 6 36 36 H 0.97002 * 119.99631 * 260.00357 * 16 14 5 37 37 H 1.08000 * 120.00699 * 359.95350 * 18 17 16 38 38 H 1.08999 * 109.46850 * 89.99755 * 20 19 18 39 39 H 1.08994 * 109.47221 * 209.99549 * 20 19 18 40 40 H 1.08999 * 109.46852 * 330.00506 * 20 19 18 41 41 H 1.07993 * 119.90897 * 180.25489 * 21 19 18 42 42 H 1.07991 * 119.99365 * 179.76578 * 22 21 19 43 43 H 1.09005 * 109.46652 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46909 * 299.99623 * 25 24 23 45 45 H 1.09000 * 109.47483 * 60.00165 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2872 3.4690 -1.1871 7 1 4.0071 4.5059 -1.3008 8 6 4.8793 2.7898 -2.2439 9 7 4.8238 3.2882 -3.4593 10 14 5.7545 1.1680 -1.9385 11 1 4.7873 0.0497 -2.0774 12 1 6.8487 1.0019 -2.9286 13 1 6.3233 1.1630 -0.5667 14 6 4.2826 3.4597 1.1670 15 16 4.1275 2.6130 2.6468 16 7 4.6287 4.7623 1.1689 17 6 3.6459 5.7483 1.0141 18 6 2.3251 5.3855 0.7935 19 6 1.3573 6.3602 0.6416 20 6 -0.0769 5.9644 0.4015 21 6 1.7007 7.6977 0.7141 22 6 3.0157 8.0670 0.9284 23 6 3.9921 7.0961 1.0817 24 8 5.2851 7.4578 1.2973 25 6 5.5663 8.8576 1.3536 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5137 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 5.2377 2.8139 -4.1973 36 1 5.5584 5.0169 1.2774 37 1 2.0535 4.3415 0.7402 38 1 -0.5900 5.8606 1.3576 39 1 -0.5707 6.7318 -0.1945 40 1 -0.1071 5.0143 -0.1319 41 1 0.9404 8.4558 0.5989 42 1 3.2812 9.1125 0.9807 43 1 6.6316 9.0074 1.5296 44 1 5.2857 9.3229 0.4086 45 1 4.9965 9.3104 2.1650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249663924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:37 Heat of formation + Delta-G solvation = -8.563592 kcal Electronic energy + Delta-G solvation = -26093.408082 eV Core-core repulsion = 22622.987925 eV Total energy + Delta-G solvation = -3470.420157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59999 -40.33961 -38.52641 -37.08022 -35.70102 -34.59118 -32.65055 -31.09499 -30.04434 -28.72911 -28.09525 -26.72039 -25.44325 -23.89540 -22.55848 -22.21232 -22.12868 -19.74068 -19.23304 -18.50765 -18.38798 -17.94306 -17.02048 -16.57899 -16.52526 -16.27369 -15.69166 -15.20305 -15.14295 -14.99050 -14.94060 -14.58983 -14.55930 -14.25230 -13.83741 -13.60820 -13.43691 -13.14572 -13.03824 -12.79076 -12.57711 -12.54617 -12.36876 -12.35306 -12.13998 -11.99787 -11.85877 -11.72396 -11.61424 -11.39413 -11.24553 -10.90664 -9.38032 -9.14615 -9.05486 -8.59689 -8.18016 -6.67816 0.00636 0.44953 0.58205 1.04355 1.18923 1.25830 1.34004 1.82627 2.17996 2.39346 2.53148 2.76903 2.91285 3.71329 3.84258 3.86676 4.02048 4.11197 4.19853 4.23388 4.34588 4.44719 4.45845 4.48379 4.51880 4.62030 4.71928 4.75667 4.79287 4.83631 4.85571 4.88386 4.93208 5.05155 5.09644 5.19474 5.22110 5.28523 5.38283 5.40794 5.49909 5.71252 5.80579 5.90068 6.05579 6.36761 6.51207 6.65904 6.81091 8.01686 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.005638 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.850332 B = 4965.031018 C = 5824.082461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.107 4.107 4 C 0.060 3.940 5 N -0.315 5.315 6 C -0.337 4.337 7 H 0.100 0.900 8 C 0.056 3.944 9 N -0.826 5.826 10 Si 0.926 3.074 11 H -0.231 1.231 12 H -0.262 1.262 13 H -0.270 1.270 14 C 0.479 3.521 15 S -0.822 6.822 16 N -0.665 5.665 17 C 0.171 3.829 18 C -0.160 4.160 19 C -0.088 4.088 20 C -0.104 4.104 21 C -0.130 4.130 22 C -0.161 4.161 23 C 0.051 3.949 24 O -0.343 6.343 25 C 0.024 3.976 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.302 0.698 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 6.081 -0.965 8.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.146 4.146 4 C -0.063 4.063 5 N 0.009 4.991 6 C -0.473 4.473 7 H 0.118 0.882 8 C -0.161 4.161 9 N -0.454 5.454 10 Si 0.749 3.251 11 H -0.156 1.156 12 H -0.187 1.187 13 H -0.195 1.195 14 C 0.121 3.879 15 S -0.690 6.690 16 N -0.298 5.298 17 C 0.071 3.929 18 C -0.183 4.183 19 C -0.089 4.089 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.180 4.180 23 C 0.003 3.997 24 O -0.258 6.258 25 C -0.070 4.070 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.174 0.826 42 H 0.178 0.822 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.775 5.170 -0.472 7.766 hybrid contribution 1.184 0.137 -0.757 1.412 sum -4.591 5.307 -1.229 7.124 Atomic orbital electron populations 1.21700 0.93916 1.02632 1.01860 1.21437 0.97491 0.93952 1.02571 1.21644 0.91568 0.99599 1.01786 1.22773 0.97702 0.81706 1.04125 1.44603 1.37750 1.11863 1.04847 1.19596 1.40977 0.99044 0.87641 0.88204 1.26011 0.94830 1.01590 0.93656 1.69725 1.35331 1.40405 0.99919 0.86143 0.79894 0.79403 0.79677 1.15580 1.18671 1.19450 1.20685 0.93404 0.86325 0.87509 1.92561 1.80831 1.71394 1.24191 1.40864 1.09279 1.00648 1.78994 1.17442 0.89223 0.85946 1.00333 1.20416 0.91139 0.99316 1.07459 1.19903 0.96291 0.93107 0.99625 1.20734 0.90784 1.02051 1.02462 1.20963 0.96147 0.95150 1.02683 1.21305 0.92854 0.99186 1.04695 1.18512 0.85109 0.91072 1.05001 1.85965 1.23299 1.28526 1.87989 1.23276 1.03641 0.77946 1.02171 0.92491 0.90777 0.93036 0.91158 0.91503 0.92618 0.91965 0.89932 0.87839 0.88651 0.74597 0.88435 0.90414 0.89189 0.92893 0.82556 0.82162 0.86824 0.91802 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.34 5.93 30.59 0.18 -3.16 16 3 C -0.11 -3.92 5.54 30.59 0.17 -3.75 16 4 C 0.06 2.49 3.99 86.38 0.34 2.84 16 5 N -0.31 -14.59 1.97 -523.26 -1.03 -15.62 16 6 C -0.34 -16.36 9.17 84.03 0.77 -15.59 16 7 H 0.10 5.39 6.90 -2.91 -0.02 5.37 16 8 C 0.06 2.59 5.39 84.90 0.46 3.04 16 9 N -0.83 -39.32 13.96 21.65 0.30 -39.02 16 10 Si 0.93 36.64 24.95 68.60 1.71 38.35 16 11 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 12 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 C 0.48 23.32 5.37 179.05 0.96 24.28 16 15 S -0.82 -43.99 28.78 -56.49 -1.63 -45.61 16 16 N -0.66 -30.42 4.51 -189.63 -0.86 -31.27 16 17 C 0.17 7.23 5.69 38.20 0.22 7.45 16 18 C -0.16 -6.56 8.65 22.38 0.19 -6.37 16 19 C -0.09 -2.89 5.88 -19.86 -0.12 -3.01 16 20 C -0.10 -2.67 10.01 71.24 0.71 -1.96 16 21 C -0.13 -3.57 9.69 22.28 0.22 -3.35 16 22 C -0.16 -4.58 9.04 22.35 0.20 -4.38 16 23 C 0.05 1.83 6.70 22.60 0.15 1.98 16 24 O -0.34 -11.31 9.75 -93.41 -0.91 -12.22 16 25 C 0.02 0.50 9.81 113.37 1.11 1.61 16 26 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.08 3.29 3.01 -2.38 -0.01 3.29 16 34 H 0.10 4.60 6.46 -2.38 -0.02 4.58 16 35 H 0.30 12.96 8.31 -92.71 -0.77 12.19 16 36 H 0.41 18.47 8.18 -92.71 -0.76 17.71 16 37 H 0.10 4.45 6.88 -2.91 -0.02 4.43 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 40 H 0.05 1.46 8.08 -2.39 -0.02 1.45 16 41 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.16 3.27 6.30 -2.92 -0.02 3.26 16 43 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.06 1.16 7.67 -2.39 -0.02 1.14 16 45 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 Total: -1.00 -64.86 374.30 4.06 -60.80 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: 0.18 Total: 47.65 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 6.29 Total: -3.07 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.58 Total: -85.91 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.91 Total: -12.22 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 1.71 Total: 38.35 kcal Atomic # 16 Polarization: -43.99 SS G_CDS: -1.63 Total: -45.61 kcal Total: -64.86 4.06 -60.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249663924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.238 kcal (2) G-P(sol) polarization free energy of solvation -64.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds