Wall clock time and date at job start Tue Mar 31 2020 13:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.50698 * 109.47268 * 239.99678 * 2 1 3 5 5 C 1.38786 * 119.66134 * 60.00311 * 4 2 1 6 6 C 1.37898 * 120.46517 * 179.97438 * 5 4 2 7 7 C 1.38799 * 119.71879 * 0.02719 * 6 5 4 8 8 N 1.38138 * 133.95381 * 179.97438 * 7 6 5 9 9 H 0.96999 * 126.40385 * 0.02562 * 8 7 6 10 10 C 1.36924 * 107.19286 * 180.02562 * 8 7 6 11 11 C 1.47768 * 125.11748 * 179.97438 * 10 8 7 12 12 C 1.39669 * 120.07067 * 359.72340 * 11 10 8 13 13 C 1.37747 * 119.92120 * 179.76759 * 12 11 10 14 14 C 1.39064 * 120.07456 * 0.52530 * 13 12 11 15 15 O 1.35638 * 119.92599 * 179.72093 * 14 13 12 16 16 C 1.34814 * 117.00194 * 174.43325 * 15 14 13 17 17 H 1.08009 * 119.99490 * 5.05256 * 16 15 14 18 18 C 1.38658 * 120.00450 * 185.05966 * 16 15 14 19 19 N 1.31550 * 119.99925 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47021 * 60.00082 * 20 18 16 22 22 H 1.48501 * 109.47202 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47207 * 299.99668 * 20 18 16 24 24 C 1.39067 * 120.14483 * 359.70581 * 14 13 12 25 25 C 1.37740 * 120.07237 * 0.03950 * 24 14 13 26 26 N 1.31121 * 109.76441 * 359.97438 * 10 8 7 27 27 C 1.35517 * 109.63629 * 0.02562 * 26 10 8 28 28 C 1.36583 * 119.66466 * 239.72946 * 4 2 1 29 29 H 1.08997 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46906 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47090 * 300.00221 * 1 2 3 32 32 H 1.09007 * 109.46906 * 119.99838 * 2 1 3 33 33 H 1.08998 * 109.47148 * 299.99807 * 3 2 1 34 34 H 1.09000 * 109.47182 * 59.99836 * 3 2 1 35 35 H 1.08999 * 109.46945 * 179.97438 * 3 2 1 36 36 H 1.08004 * 119.76041 * 359.97438 * 5 4 2 37 37 H 1.08008 * 120.13786 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.04005 * 0.02562 * 12 11 10 39 39 H 1.08003 * 119.95604 * 180.25241 * 13 12 11 40 40 H 0.96996 * 120.00111 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.96039 * 180.02562 * 24 14 13 42 42 H 1.07995 * 120.03840 * 180.02562 * 25 24 14 43 43 H 1.08004 * 120.05648 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6928 -0.2303 -2.4875 6 6 2.1438 -0.8671 -3.6244 7 6 2.9423 -1.9966 -3.5096 8 7 3.5415 -2.8439 -4.4214 9 1 3.4940 -2.7761 -5.3878 10 6 4.2149 -3.7975 -3.7058 11 6 4.9974 -4.9054 -4.2921 12 6 5.0865 -5.0418 -5.6793 13 6 5.8207 -6.0729 -6.2225 14 6 6.4637 -6.9839 -5.3915 15 8 7.1811 -8.0015 -5.9297 16 6 7.8739 -8.7808 -5.0752 17 1 7.7770 -8.6328 -4.0097 18 6 8.7108 -9.7723 -5.5641 19 7 8.8286 -9.9528 -6.8619 20 14 9.6712 -10.8517 -4.3801 21 1 8.7257 -11.5828 -3.4988 22 1 10.4855 -11.8271 -5.1488 23 1 10.5656 -10.0038 -3.5515 24 6 6.3729 -6.8537 -4.0099 25 6 5.6447 -5.8218 -3.4602 26 7 4.0610 -3.5795 -2.4220 27 6 3.2862 -2.4834 -2.2359 28 6 2.8217 -1.8171 -1.0970 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.0710 0.6484 -2.5758 37 1 1.8760 -0.4891 -4.6001 38 1 4.5839 -4.3372 -6.3252 39 1 5.8933 -6.1765 -7.2951 40 1 9.4137 -10.6466 -7.2039 41 1 6.8738 -7.5627 -3.3673 42 1 5.5749 -5.7210 -2.3873 43 1 3.0831 -2.1798 -0.1139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250644796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:33 Heat of formation + Delta-G solvation = 49.716839 kcal Electronic energy + Delta-G solvation = -24847.520031 eV Core-core repulsion = 21244.183152 eV Total energy + Delta-G solvation = -3603.336879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90528 -39.19642 -38.39966 -36.59464 -34.50011 -33.03746 -32.52727 -30.53891 -30.18728 -29.67236 -27.67040 -27.34961 -25.61391 -23.29197 -23.14532 -22.00313 -21.88261 -20.51395 -19.75813 -18.21390 -18.01901 -17.20174 -16.36915 -16.11542 -15.13270 -14.93978 -14.71526 -14.56489 -14.32459 -14.00235 -13.84789 -13.72215 -13.66480 -13.57713 -13.00066 -12.90270 -12.62358 -12.51501 -11.94839 -11.88836 -11.78798 -11.50558 -11.33980 -11.16791 -11.07665 -10.91758 -10.89244 -10.83458 -10.57942 -10.56425 -9.79382 -9.51150 -9.07009 -8.43267 -8.34751 -8.14263 -7.13728 -6.65020 -4.20963 0.85396 1.50388 1.91009 2.08254 2.97608 3.03231 3.05340 3.08983 3.22225 3.82574 3.89431 4.20372 4.46221 4.58069 4.68794 4.78033 4.90599 5.00805 5.00971 5.07389 5.18335 5.35127 5.39654 5.44154 5.45816 5.49227 5.56384 5.60296 5.62236 5.75378 5.82104 5.98810 6.00828 6.02989 6.06582 6.18913 6.36551 6.42424 6.59115 6.60164 6.71614 6.81490 6.86342 7.03647 7.13598 7.23359 7.46962 7.56979 7.79913 8.11157 8.79666 9.44776 10.51358 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.002087 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.494225 B =13414.048893 C =14106.180974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.109 4.109 6 C -0.107 4.107 7 C 0.035 3.965 8 N -0.605 5.605 9 H 0.420 0.580 10 C 0.373 3.627 11 C -0.154 4.154 12 C -0.049 4.049 13 C -0.192 4.192 14 C 0.168 3.832 15 O -0.162 6.162 16 C -0.393 4.393 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.853 5.853 20 Si 0.945 3.055 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.240 4.240 25 C -0.011 4.011 26 N -0.508 5.508 27 C 0.064 3.936 28 C -0.071 4.071 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.274 0.726 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.865 17.793 8.125 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.128 4.128 6 C -0.128 4.128 7 C -0.075 4.075 8 N -0.216 5.216 9 H 0.259 0.741 10 C 0.112 3.888 11 C -0.158 4.158 12 C -0.070 4.070 13 C -0.212 4.212 14 C 0.111 3.889 15 O -0.062 6.062 16 C -0.468 4.468 17 H 0.115 0.885 18 C -0.164 4.164 19 N -0.485 5.485 20 Si 0.769 3.231 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.259 4.259 25 C -0.031 4.031 26 N -0.228 5.228 27 C -0.056 4.056 28 C -0.091 4.091 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.359 17.071 8.434 22.701 hybrid contribution 0.116 -0.042 -0.702 0.713 sum -12.243 17.030 7.732 22.354 Atomic orbital electron populations 1.21850 0.94524 1.02038 1.01660 1.20061 0.95766 0.95869 0.95354 1.21851 1.01343 0.95223 1.01661 1.19204 0.99069 0.96081 0.94633 1.20567 1.01136 1.00082 0.91030 1.19876 0.99490 0.94302 0.99087 1.18877 1.01941 0.96123 0.90525 1.43151 1.44434 1.24795 1.09240 0.74122 1.21712 0.91854 0.89269 0.85999 1.17128 1.08394 0.97585 0.92705 1.20483 0.97010 0.96734 0.92727 1.20031 1.04790 0.96973 0.99368 1.19541 0.90399 0.87364 0.91623 1.83927 1.51986 1.34104 1.36228 1.21431 1.22907 1.12745 0.89759 0.88491 1.25390 0.96715 0.97331 0.97001 1.70020 1.35347 1.31262 1.11908 0.85711 0.79274 0.79099 0.79051 1.19213 1.20118 1.19199 1.21128 1.07355 1.02510 0.94901 1.20794 0.91898 0.91215 0.99165 1.70697 1.21079 1.17043 1.14022 1.19099 0.99373 0.94652 0.92446 1.19848 0.97929 0.94771 0.96509 0.92496 0.92525 0.92584 0.90492 0.92519 0.92591 0.92496 0.85810 0.86332 0.87295 0.85817 0.91558 0.84748 0.85688 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.00 37.16 0.33 -0.68 16 2 C -0.05 -0.43 3.08 -91.78 -0.28 -0.71 16 3 C -0.14 -1.02 9.00 37.16 0.33 -0.68 16 4 C -0.09 -0.94 4.75 -105.02 -0.50 -1.44 16 5 C -0.11 -1.10 8.68 -39.50 -0.34 -1.44 16 6 C -0.11 -1.20 10.07 -39.50 -0.40 -1.60 16 7 C 0.04 0.50 7.30 -83.91 -0.61 -0.12 16 8 N -0.61 -8.39 6.12 -8.44 -0.05 -8.44 16 9 H 0.42 4.46 8.00 -40.82 -0.33 4.13 16 10 C 0.37 6.30 7.73 -154.53 -1.19 5.11 16 11 C -0.15 -2.74 5.88 -104.93 -0.62 -3.35 16 12 C -0.05 -0.82 9.68 -39.23 -0.38 -1.20 16 13 C -0.19 -3.73 9.97 -39.45 -0.39 -4.13 16 14 C 0.17 3.80 6.65 -38.97 -0.26 3.54 16 15 O -0.16 -4.34 9.75 0.44 0.00 -4.33 16 16 C -0.39 -10.36 9.48 30.89 0.29 -10.06 16 17 H 0.10 2.35 5.19 -52.48 -0.27 2.07 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.85 -23.72 13.67 55.48 0.76 -22.96 16 20 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.24 -4.97 9.15 -39.46 -0.36 -5.34 16 25 C -0.01 -0.20 9.67 -39.23 -0.38 -0.58 16 26 N -0.51 -9.15 10.83 -8.73 -0.09 -9.25 16 27 C 0.06 1.03 7.22 -84.72 -0.61 0.41 16 28 C -0.07 -0.94 9.66 -39.56 -0.38 -1.33 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 7.36 -51.93 -0.38 -0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 33 H 0.06 0.38 7.36 -51.93 -0.38 -0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.12 0.95 7.04 -52.48 -0.37 0.58 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.11 1.39 7.09 -52.49 -0.37 1.02 16 39 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.13 2.76 5.62 -52.49 -0.29 2.46 16 42 H 0.13 2.22 7.80 -52.49 -0.41 1.81 16 43 H 0.12 1.52 7.91 -52.48 -0.41 1.11 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -30.29 361.88 -10.10 -40.39 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.30 Total: 7.27 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -5.85 Total: -22.60 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.61 Total: -40.65 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.00 Total: -4.33 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.29 -10.10 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250644796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.105 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds