Wall clock time and date at job start Tue Mar 31 2020 13:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.50698 * 109.47268 * 239.99678 * 2 1 3 5 5 C 1.38786 * 119.66134 * 60.00311 * 4 2 1 6 6 C 1.37898 * 120.46517 * 179.97438 * 5 4 2 7 7 C 1.38799 * 119.71879 * 0.02719 * 6 5 4 8 8 N 1.38138 * 133.95381 * 179.97438 * 7 6 5 9 9 H 0.96999 * 126.40385 * 0.02562 * 8 7 6 10 10 C 1.36924 * 107.19286 * 180.02562 * 8 7 6 11 11 C 1.47768 * 125.11748 * 179.97438 * 10 8 7 12 12 C 1.39669 * 120.07067 * 359.72340 * 11 10 8 13 13 C 1.37747 * 119.92120 * 179.76759 * 12 11 10 14 14 C 1.39064 * 120.07456 * 0.52530 * 13 12 11 15 15 O 1.35638 * 119.92599 * 179.72093 * 14 13 12 16 16 C 1.34814 * 117.00194 * 174.43325 * 15 14 13 17 17 H 1.08009 * 119.99490 * 5.05256 * 16 15 14 18 18 C 1.38658 * 120.00450 * 185.05966 * 16 15 14 19 19 N 1.31550 * 119.99925 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47021 * 60.00082 * 20 18 16 22 22 H 1.48501 * 109.47202 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47207 * 299.99668 * 20 18 16 24 24 C 1.39067 * 120.14483 * 359.70581 * 14 13 12 25 25 C 1.37740 * 120.07237 * 0.03950 * 24 14 13 26 26 N 1.31121 * 109.76441 * 359.97438 * 10 8 7 27 27 C 1.35517 * 109.63629 * 0.02562 * 26 10 8 28 28 C 1.36583 * 119.66466 * 239.72946 * 4 2 1 29 29 H 1.08997 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46906 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47090 * 300.00221 * 1 2 3 32 32 H 1.09007 * 109.46906 * 119.99838 * 2 1 3 33 33 H 1.08998 * 109.47148 * 299.99807 * 3 2 1 34 34 H 1.09000 * 109.47182 * 59.99836 * 3 2 1 35 35 H 1.08999 * 109.46945 * 179.97438 * 3 2 1 36 36 H 1.08004 * 119.76041 * 359.97438 * 5 4 2 37 37 H 1.08008 * 120.13786 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.04005 * 0.02562 * 12 11 10 39 39 H 1.08003 * 119.95604 * 180.25241 * 13 12 11 40 40 H 0.96996 * 120.00111 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.96039 * 180.02562 * 24 14 13 42 42 H 1.07995 * 120.03840 * 180.02562 * 25 24 14 43 43 H 1.08004 * 120.05648 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6928 -0.2303 -2.4875 6 6 2.1438 -0.8671 -3.6244 7 6 2.9423 -1.9966 -3.5096 8 7 3.5415 -2.8439 -4.4214 9 1 3.4940 -2.7761 -5.3878 10 6 4.2149 -3.7975 -3.7058 11 6 4.9974 -4.9054 -4.2921 12 6 5.0865 -5.0418 -5.6793 13 6 5.8207 -6.0729 -6.2225 14 6 6.4637 -6.9839 -5.3915 15 8 7.1811 -8.0015 -5.9297 16 6 7.8739 -8.7808 -5.0752 17 1 7.7770 -8.6328 -4.0097 18 6 8.7108 -9.7723 -5.5641 19 7 8.8286 -9.9528 -6.8619 20 14 9.6712 -10.8517 -4.3801 21 1 8.7257 -11.5828 -3.4988 22 1 10.4855 -11.8271 -5.1488 23 1 10.5656 -10.0038 -3.5515 24 6 6.3729 -6.8537 -4.0099 25 6 5.6447 -5.8218 -3.4602 26 7 4.0610 -3.5795 -2.4220 27 6 3.2862 -2.4834 -2.2359 28 6 2.8217 -1.8171 -1.0970 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.0710 0.6484 -2.5758 37 1 1.8760 -0.4891 -4.6001 38 1 4.5839 -4.3372 -6.3252 39 1 5.8933 -6.1765 -7.2951 40 1 9.4137 -10.6466 -7.2039 41 1 6.8738 -7.5627 -3.3673 42 1 5.5749 -5.7210 -2.3873 43 1 3.0831 -2.1798 -0.1139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250644796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:32 Heat of formation + Delta-G solvation = 33.941033 kcal Electronic energy + Delta-G solvation = -24848.204121 eV Core-core repulsion = 21244.183152 eV Total energy + Delta-G solvation = -3604.020969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.03875 -40.83307 -39.37549 -38.17008 -35.33268 -34.36788 -34.18178 -32.02590 -31.62253 -30.70884 -28.86117 -27.88350 -27.43054 -24.54987 -24.23455 -23.41493 -22.99893 -21.83573 -20.73140 -19.93065 -19.28794 -18.69023 -17.56846 -17.11137 -16.37329 -16.30490 -16.23484 -15.94087 -15.62198 -15.38529 -15.22107 -14.85706 -14.58266 -14.49353 -14.23177 -14.17336 -13.74566 -13.59208 -13.32181 -13.00030 -12.90571 -12.74459 -12.70330 -12.46002 -12.33542 -12.16271 -11.81834 -11.78722 -11.72846 -11.55802 -11.29331 -10.93257 -10.85811 -9.96416 -9.67428 -9.13677 -8.60229 -8.52533 -6.19386 -0.32321 0.48591 0.50531 0.62597 1.36378 1.45148 1.51697 1.86966 1.92139 2.15246 2.77973 2.90654 3.06692 3.12694 3.36234 3.63357 3.82827 3.98922 4.02410 4.10805 4.20848 4.29599 4.41088 4.41336 4.44204 4.49500 4.58596 4.64180 4.81771 4.83448 4.90995 5.02748 5.07507 5.08635 5.09382 5.14986 5.27131 5.31176 5.40172 5.47893 5.48782 5.53643 5.56810 5.62065 5.75836 5.94523 5.95983 5.98576 6.43009 6.90476 6.91556 7.65616 8.68631 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.002087 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.494225 B =13414.048893 C =14106.180974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.096 4.096 6 C -0.106 4.106 7 C 0.030 3.970 8 N -0.588 5.588 9 H 0.435 0.565 10 C 0.347 3.653 11 C -0.130 4.130 12 C -0.035 4.035 13 C -0.195 4.195 14 C 0.137 3.863 15 O -0.214 6.214 16 C -0.417 4.417 17 H 0.105 0.895 18 C -0.016 4.016 19 N -0.911 5.911 20 Si 1.017 2.983 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.258 1.258 24 C -0.242 4.242 25 C -0.019 4.019 26 N -0.531 5.531 27 C 0.022 3.978 28 C -0.090 4.090 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.275 0.725 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 21.639 9.207 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.127 4.127 7 C -0.080 4.080 8 N -0.201 5.201 9 H 0.277 0.723 10 C 0.084 3.916 11 C -0.134 4.134 12 C -0.054 4.054 13 C -0.214 4.214 14 C 0.084 3.916 15 O -0.119 6.119 16 C -0.493 4.493 17 H 0.123 0.877 18 C -0.216 4.216 19 N -0.548 5.548 20 Si 0.836 3.164 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.182 1.182 24 C -0.262 4.262 25 C -0.039 4.039 26 N -0.253 5.253 27 C -0.097 4.097 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.068 20.978 9.529 27.530 hybrid contribution 0.528 -0.674 -0.815 1.182 sum -14.540 20.304 8.714 26.450 Atomic orbital electron populations 1.21839 0.93286 1.01786 1.02940 1.20134 0.96672 0.96330 0.93998 1.21840 1.00705 0.94373 1.02941 1.19573 0.97332 0.94846 0.96309 1.21049 0.99918 1.00335 0.90206 1.20309 0.98274 0.93016 1.01083 1.19206 1.02297 0.96845 0.89670 1.42979 1.43360 1.23744 1.09985 0.72257 1.21337 0.93654 0.90282 0.86302 1.17378 1.06109 0.96682 0.93195 1.20878 0.95597 0.96170 0.92785 1.20332 1.04442 0.96856 0.99796 1.20082 0.90857 0.87805 0.92886 1.83912 1.54594 1.36289 1.37075 1.21848 1.23670 1.13434 0.90338 0.87725 1.26578 0.97557 0.98597 0.98819 1.70150 1.37562 1.33029 1.14040 0.84667 0.77837 0.77148 0.76765 1.18154 1.19526 1.18199 1.21165 1.07604 1.02998 0.94393 1.20899 0.92013 0.91102 0.99880 1.70561 1.21526 1.18227 1.14998 1.19486 1.00752 0.95096 0.94345 1.20057 0.99033 0.95861 0.95999 0.93516 0.91507 0.91134 0.90751 0.91502 0.91141 0.93521 0.82339 0.83090 0.82491 0.84906 0.91549 0.85343 0.84918 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.00 71.98 0.65 -0.84 16 2 C -0.05 -0.70 3.08 -11.54 -0.04 -0.74 16 3 C -0.14 -1.49 9.00 71.98 0.65 -0.84 16 4 C -0.08 -1.45 4.75 -20.12 -0.10 -1.55 16 5 C -0.10 -1.51 8.68 22.32 0.19 -1.31 16 6 C -0.11 -1.92 10.07 22.32 0.22 -1.70 16 7 C 0.03 0.75 7.30 38.87 0.28 1.04 16 8 N -0.59 -14.60 6.12 -180.63 -1.11 -15.71 16 9 H 0.44 7.54 8.00 -92.71 -0.74 6.80 16 10 C 0.35 11.20 7.73 136.44 1.05 12.25 16 11 C -0.13 -4.47 5.88 -20.06 -0.12 -4.59 16 12 C -0.03 -1.08 9.68 22.50 0.22 -0.87 16 13 C -0.20 -7.59 9.97 22.35 0.22 -7.36 16 14 C 0.14 6.47 6.65 22.67 0.15 6.62 16 15 O -0.21 -12.26 9.75 -21.34 -0.21 -12.46 16 16 C -0.42 -23.37 9.48 67.92 0.64 -22.73 16 17 H 0.11 5.38 5.19 -2.91 -0.02 5.37 16 18 C -0.02 -0.90 5.49 84.84 0.47 -0.43 16 19 N -0.91 -53.84 13.67 21.61 0.30 -53.54 16 20 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 C -0.24 -10.47 9.15 22.35 0.20 -10.26 16 25 C -0.02 -0.72 9.67 22.50 0.22 -0.50 16 26 N -0.53 -18.85 10.83 -181.52 -1.97 -20.81 16 27 C 0.02 0.68 7.22 39.56 0.29 0.97 16 28 C -0.09 -2.28 9.66 22.28 0.22 -2.06 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.57 7.36 -2.38 -0.02 0.56 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 1.03 7.83 -2.38 -0.02 1.01 16 33 H 0.07 0.58 7.36 -2.39 -0.02 0.56 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.16 1.45 7.04 -2.91 -0.02 1.43 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.16 3.37 7.09 -2.91 -0.02 3.35 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.13 5.59 5.62 -2.91 -0.02 5.58 16 42 H 0.13 4.79 7.80 -2.91 -0.02 4.77 16 43 H 0.12 2.99 7.91 -2.91 -0.02 2.97 16 Total: -1.00 -71.67 361.88 4.78 -66.88 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.31 Total: 26.97 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 5.43 Total: -34.91 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -2.78 Total: -90.06 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.21 Total: -12.46 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -71.67 4.78 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250644796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.824 kcal (2) G-P(sol) polarization free energy of solvation -71.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds