Wall clock time and date at job start Tue Mar 31 2020 13:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32634 * 1 3 3 C 1.47701 * 119.99969 * 2 1 4 4 C 1.39504 * 120.17901 * 0.29383 * 3 2 1 5 5 C 1.37960 * 119.91931 * 180.32109 * 4 3 2 6 6 C 1.38435 * 120.29475 * 359.68025 * 5 4 3 7 7 C 1.38152 * 120.36239 * 0.02562 * 6 5 4 8 8 C 1.38702 * 120.06882 * 0.02562 * 7 6 5 9 9 N 1.39725 * 120.14046 * 180.02562 * 8 7 6 10 10 C 1.34773 * 120.00244 * 28.89621 * 9 8 7 11 11 O 1.21589 * 119.99690 * 357.31673 * 10 9 8 12 12 N 1.34774 * 119.99950 * 177.31601 * 10 9 8 13 13 C 1.46499 * 119.99933 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47124 * 180.02562 * 13 12 10 15 15 C 1.38626 * 119.74750 * 269.72292 * 14 13 12 16 16 C 1.37622 * 120.24920 * 179.71945 * 15 14 13 17 17 C 1.40717 * 119.74253 * 0.57674 * 16 15 14 18 18 C 1.41394 * 120.24797 * 179.68103 * 17 16 15 19 19 H 1.07999 * 120.00388 * 158.30771 * 18 17 16 20 20 C 1.39941 * 119.99652 * 338.31334 * 18 17 16 21 21 N 1.30824 * 120.00119 * 328.01681 * 20 18 17 22 22 Si 1.86800 * 120.00155 * 148.02197 * 20 18 17 23 23 H 1.48505 * 109.47332 * 94.98400 * 22 20 18 24 24 H 1.48500 * 109.47460 * 214.98174 * 22 20 18 25 25 H 1.48494 * 109.47122 * 334.98184 * 22 20 18 26 26 C 1.40716 * 119.51171 * 359.70175 * 17 16 15 27 27 C 1.37620 * 119.74353 * 359.97438 * 26 17 16 28 28 H 1.07998 * 120.00026 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00234 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99969 * 179.97438 * 2 1 3 31 31 H 1.07995 * 120.03491 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.84970 * 179.69801 * 5 4 3 33 33 H 1.07998 * 119.81890 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.96744 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99260 * 208.88428 * 9 8 7 36 36 H 0.97001 * 120.00267 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47155 * 60.00016 * 13 12 10 38 38 H 1.08999 * 109.47318 * 300.00018 * 13 12 10 39 39 H 1.07997 * 119.87945 * 359.97438 * 15 14 13 40 40 H 1.07996 * 120.13106 * 180.28276 * 16 15 14 41 41 H 0.97007 * 120.00475 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.13406 * 179.97438 * 26 17 16 43 43 H 1.07998 * 119.87656 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3263 0.0000 0.0000 3 6 2.0648 1.2791 0.0000 4 6 1.3711 2.4894 0.0062 5 6 2.0663 3.6811 -0.0005 6 6 3.4506 3.6820 -0.0068 7 6 4.1497 2.4904 -0.0068 8 6 3.4660 1.2836 -0.0012 9 7 4.1715 0.0775 -0.0007 10 6 5.3959 0.0133 0.5590 11 8 5.9070 1.0156 1.0199 12 7 6.0537 -1.1620 0.6077 13 6 7.3843 -1.2320 1.2165 14 6 7.8965 -2.6474 1.1431 15 6 7.6340 -3.5286 2.1806 16 6 8.0918 -4.8251 2.1217 17 6 8.8394 -5.2515 1.0084 18 6 9.3207 -6.5792 0.9399 19 1 9.5750 -7.0129 -0.0160 20 6 9.4674 -7.3315 2.1107 21 7 9.7789 -6.7385 3.2345 22 14 9.2188 -9.1824 2.0691 23 1 10.5315 -9.8545 1.8946 24 1 8.6004 -9.6277 3.3437 25 1 8.3268 -9.5366 0.9360 26 6 9.1047 -4.3467 -0.0362 27 6 8.6312 -3.0569 0.0410 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8663 -0.9353 0.0004 31 1 0.2912 2.4935 0.0106 32 1 1.5280 4.6174 -0.0007 33 1 3.9870 4.6193 -0.0116 34 1 5.2297 2.4985 -0.0113 35 1 3.7800 -0.7135 -0.4030 36 1 5.6458 -1.9618 0.2403 37 1 7.3236 -0.9208 2.2594 38 1 8.0649 -0.5715 0.6793 39 1 7.0645 -3.1976 3.0365 40 1 7.8823 -5.5112 2.9289 41 1 9.8810 -7.2600 4.0461 42 1 9.6778 -4.6632 -0.8951 43 1 8.8339 -2.3606 -0.7592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311111784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:08 Heat of formation + Delta-G solvation = 32.866169 kcal Electronic energy + Delta-G solvation = -24858.165578 eV Core-core repulsion = 21254.097999 eV Total energy + Delta-G solvation = -3604.067579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70330 -38.87339 -37.72041 -35.03541 -34.76470 -34.20066 -33.55261 -30.69367 -29.72244 -29.43125 -29.04814 -26.78900 -24.04974 -23.77956 -22.39373 -21.14602 -20.70088 -20.16559 -19.92871 -18.49782 -17.78697 -17.45530 -16.23430 -15.67137 -15.37643 -15.20690 -14.96426 -14.63081 -14.18660 -14.08762 -13.91311 -13.73955 -13.42962 -13.31193 -13.11826 -12.64067 -12.27331 -12.12480 -12.08653 -11.65670 -11.45824 -11.27307 -11.23519 -11.15702 -10.72582 -10.62067 -10.58905 -10.47273 -9.88626 -9.74575 -9.55473 -9.14585 -8.81810 -8.56263 -7.89773 -7.64565 -7.57719 -7.05982 -4.48070 0.78245 1.33249 2.37833 2.40677 2.79506 2.93549 2.97656 3.00933 3.15122 3.21756 3.78853 3.87369 4.23544 4.49726 4.54951 4.62995 4.90966 5.03416 5.16610 5.37263 5.47180 5.52480 5.65421 5.70893 5.83551 5.88947 6.09874 6.13972 6.20654 6.24454 6.30180 6.32833 6.42340 6.50337 6.53395 6.78717 6.81371 6.89520 6.98596 7.01311 7.09932 7.19371 7.45424 7.69233 7.88451 7.96350 8.07043 8.12927 8.45515 8.62127 8.70885 8.81617 9.89892 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.002187 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.700683 B =12798.077641 C =13599.967886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.112 4.112 3 C -0.100 4.100 4 C -0.095 4.095 5 C -0.146 4.146 6 C -0.098 4.098 7 C -0.131 4.131 8 C 0.188 3.812 9 N -0.687 5.687 10 C 0.697 3.303 11 O -0.580 6.580 12 N -0.727 5.727 13 C 0.203 3.797 14 C -0.257 4.257 15 C -0.071 4.071 16 C -0.185 4.185 17 C 0.121 3.879 18 C -0.464 4.464 19 H 0.083 0.917 20 C 0.087 3.913 21 N -0.763 5.763 22 Si 0.898 3.102 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.235 4.235 27 C -0.062 4.062 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.406 0.594 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.285 0.715 42 H 0.093 0.907 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.776 11.202 -5.218 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.130 4.130 3 C -0.103 4.103 4 C -0.113 4.113 5 C -0.165 4.165 6 C -0.116 4.116 7 C -0.151 4.151 8 C 0.091 3.909 9 N -0.333 5.333 10 C 0.398 3.602 11 O -0.458 6.458 12 N -0.380 5.380 13 C 0.081 3.919 14 C -0.259 4.259 15 C -0.090 4.090 16 C -0.205 4.205 17 C 0.118 3.882 18 C -0.491 4.491 19 H 0.101 0.899 20 C -0.136 4.136 21 N -0.385 5.385 22 Si 0.721 3.279 23 H -0.193 1.193 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.255 4.255 27 C -0.081 4.081 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.241 0.759 36 H 0.231 0.769 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.108 12.002 -4.497 19.061 hybrid contribution -0.392 -1.734 -0.159 1.785 sum -14.500 10.268 -4.656 18.367 Atomic orbital electron populations 1.24295 0.95456 1.02204 1.00068 1.21605 0.95299 0.95492 1.00640 1.18770 0.90949 0.93962 1.06597 1.21034 0.99492 0.91194 0.99571 1.21000 0.94404 0.97749 1.03303 1.21144 0.94057 0.97841 0.98594 1.21540 1.02281 0.90386 1.00894 1.17619 0.89523 0.85485 0.98269 1.42700 1.17850 1.11764 1.60980 1.16114 0.80259 0.84849 0.79026 1.90858 1.67723 1.34256 1.52969 1.45853 1.20234 1.08469 1.63462 1.19855 0.80122 0.95207 0.96715 1.18882 1.13080 0.94609 0.99313 1.20496 0.98513 0.93921 0.96112 1.21051 1.03455 0.95302 1.00644 1.17601 0.88031 0.92007 0.90515 1.19612 1.38488 0.97065 0.93970 0.89925 1.25981 0.91324 1.01520 0.94757 1.69918 1.27880 1.39556 1.01193 0.86472 0.79808 0.82299 0.79316 1.19349 1.19786 1.18052 1.20901 1.08905 0.93811 1.01878 1.20409 0.96660 0.95373 0.95617 0.88032 0.87778 0.86893 0.85674 0.86133 0.85851 0.83072 0.75863 0.76851 0.92340 0.92365 0.89447 0.87690 0.90369 0.88910 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 14.15 28.83 0.41 -1.01 16 2 C -0.11 -1.06 9.53 -37.62 -0.36 -1.42 16 3 C -0.10 -1.12 5.88 -104.85 -0.62 -1.74 16 4 C -0.09 -0.94 9.40 -39.21 -0.37 -1.30 16 5 C -0.15 -1.41 10.03 -39.61 -0.40 -1.81 16 6 C -0.10 -1.08 10.03 -39.54 -0.40 -1.47 16 7 C -0.13 -1.77 8.73 -39.44 -0.34 -2.11 16 8 C 0.19 2.45 6.41 -83.38 -0.53 1.91 16 9 N -0.69 -8.62 5.11 -14.01 -0.07 -8.69 16 10 C 0.70 10.90 8.43 -86.92 -0.73 10.16 16 11 O -0.58 -10.89 13.46 5.29 0.07 -10.82 16 12 N -0.73 -11.04 5.55 -66.42 -0.37 -11.41 16 13 C 0.20 3.57 5.79 -5.19 -0.03 3.54 16 14 C -0.26 -5.17 5.27 -104.33 -0.55 -5.72 16 15 C -0.07 -1.55 9.67 -39.66 -0.38 -1.94 16 16 C -0.19 -4.52 8.79 -38.87 -0.34 -4.86 16 17 C 0.12 3.05 5.57 -106.82 -0.60 2.46 16 18 C -0.46 -11.66 8.96 -37.74 -0.34 -12.00 16 19 H 0.08 2.00 8.01 -52.49 -0.42 1.58 16 20 C 0.09 2.07 4.79 -17.34 -0.08 1.98 16 21 N -0.76 -18.74 11.74 55.55 0.65 -18.09 16 22 Si 0.90 17.45 29.66 -169.99 -5.04 12.41 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 C -0.24 -5.45 9.80 -38.87 -0.38 -5.83 16 27 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 28 H 0.10 0.69 6.04 -52.49 -0.32 0.37 16 29 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.11 0.95 6.77 -52.49 -0.36 0.59 16 31 H 0.13 0.94 6.17 -52.49 -0.32 0.62 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.15 2.32 5.80 -52.49 -0.30 2.02 16 35 H 0.41 3.93 7.29 -40.82 -0.30 3.64 16 36 H 0.40 5.37 8.48 -40.82 -0.35 5.02 16 37 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 2.64 6.50 -52.49 -0.34 2.30 16 41 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 42 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -28.27 365.59 -10.89 -39.16 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.22 Total: 14.76 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -6.43 Total: -22.83 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.21 Total: -38.19 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.04 Total: 12.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.27 -10.89 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311111784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.030 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds