Wall clock time and date at job start Tue Mar 31 2020 13:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32634 * 1 3 3 C 1.47701 * 119.99969 * 2 1 4 4 C 1.39504 * 120.17901 * 0.29383 * 3 2 1 5 5 C 1.37960 * 119.91931 * 180.32109 * 4 3 2 6 6 C 1.38435 * 120.29475 * 359.68025 * 5 4 3 7 7 C 1.38152 * 120.36239 * 0.02562 * 6 5 4 8 8 C 1.38702 * 120.06882 * 0.02562 * 7 6 5 9 9 N 1.39725 * 120.14046 * 180.02562 * 8 7 6 10 10 C 1.34773 * 120.00244 * 28.89621 * 9 8 7 11 11 O 1.21589 * 119.99690 * 357.31673 * 10 9 8 12 12 N 1.34774 * 119.99950 * 177.31601 * 10 9 8 13 13 C 1.46499 * 119.99933 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47124 * 180.02562 * 13 12 10 15 15 C 1.38626 * 119.74750 * 269.72292 * 14 13 12 16 16 C 1.37622 * 120.24920 * 179.71945 * 15 14 13 17 17 C 1.40717 * 119.74253 * 0.57674 * 16 15 14 18 18 C 1.41394 * 120.24797 * 179.68103 * 17 16 15 19 19 H 1.07999 * 120.00388 * 158.30771 * 18 17 16 20 20 C 1.39941 * 119.99652 * 338.31334 * 18 17 16 21 21 N 1.30824 * 120.00119 * 328.01681 * 20 18 17 22 22 Si 1.86800 * 120.00155 * 148.02197 * 20 18 17 23 23 H 1.48505 * 109.47332 * 94.98400 * 22 20 18 24 24 H 1.48500 * 109.47460 * 214.98174 * 22 20 18 25 25 H 1.48494 * 109.47122 * 334.98184 * 22 20 18 26 26 C 1.40716 * 119.51171 * 359.70175 * 17 16 15 27 27 C 1.37620 * 119.74353 * 359.97438 * 26 17 16 28 28 H 1.07998 * 120.00026 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00234 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99969 * 179.97438 * 2 1 3 31 31 H 1.07995 * 120.03491 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.84970 * 179.69801 * 5 4 3 33 33 H 1.07998 * 119.81890 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.96744 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99260 * 208.88428 * 9 8 7 36 36 H 0.97001 * 120.00267 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47155 * 60.00016 * 13 12 10 38 38 H 1.08999 * 109.47318 * 300.00018 * 13 12 10 39 39 H 1.07997 * 119.87945 * 359.97438 * 15 14 13 40 40 H 1.07996 * 120.13106 * 180.28276 * 16 15 14 41 41 H 0.97007 * 120.00475 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.13406 * 179.97438 * 26 17 16 43 43 H 1.07998 * 119.87656 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3263 0.0000 0.0000 3 6 2.0648 1.2791 0.0000 4 6 1.3711 2.4894 0.0062 5 6 2.0663 3.6811 -0.0005 6 6 3.4506 3.6820 -0.0068 7 6 4.1497 2.4904 -0.0068 8 6 3.4660 1.2836 -0.0012 9 7 4.1715 0.0775 -0.0007 10 6 5.3959 0.0133 0.5590 11 8 5.9070 1.0156 1.0199 12 7 6.0537 -1.1620 0.6077 13 6 7.3843 -1.2320 1.2165 14 6 7.8965 -2.6474 1.1431 15 6 7.6340 -3.5286 2.1806 16 6 8.0918 -4.8251 2.1217 17 6 8.8394 -5.2515 1.0084 18 6 9.3207 -6.5792 0.9399 19 1 9.5750 -7.0129 -0.0160 20 6 9.4674 -7.3315 2.1107 21 7 9.7789 -6.7385 3.2345 22 14 9.2188 -9.1824 2.0691 23 1 10.5315 -9.8545 1.8946 24 1 8.6004 -9.6277 3.3437 25 1 8.3268 -9.5366 0.9360 26 6 9.1047 -4.3467 -0.0362 27 6 8.6312 -3.0569 0.0410 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8663 -0.9353 0.0004 31 1 0.2912 2.4935 0.0106 32 1 1.5280 4.6174 -0.0007 33 1 3.9870 4.6193 -0.0116 34 1 5.2297 2.4985 -0.0113 35 1 3.7800 -0.7135 -0.4030 36 1 5.6458 -1.9618 0.2403 37 1 7.3236 -0.9208 2.2594 38 1 8.0649 -0.5715 0.6793 39 1 7.0645 -3.1976 3.0365 40 1 7.8823 -5.5112 2.9289 41 1 9.8810 -7.2600 4.0461 42 1 9.6778 -4.6632 -0.8951 43 1 8.8339 -2.3606 -0.7592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311111784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:07 Heat of formation + Delta-G solvation = 18.831822 kcal Electronic energy + Delta-G solvation = -24858.774153 eV Core-core repulsion = 21254.097999 eV Total energy + Delta-G solvation = -3604.676154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79165 -39.96940 -39.34709 -36.45484 -35.86183 -35.20439 -34.97763 -32.25657 -31.21808 -30.64893 -29.99734 -28.36082 -25.51800 -24.69101 -23.43579 -22.92712 -21.86924 -21.81609 -20.67351 -19.61212 -19.26560 -18.78954 -17.20078 -17.14895 -16.72324 -16.35800 -16.08823 -15.90303 -15.62915 -15.54065 -15.07977 -14.92468 -14.68576 -14.30196 -14.11007 -13.99575 -13.85355 -13.61751 -13.33210 -13.04403 -12.97012 -12.79326 -12.40766 -12.29937 -12.18482 -11.93533 -11.55113 -11.49848 -11.32339 -11.30082 -11.05694 -10.90907 -10.13287 -9.44792 -9.40630 -9.37173 -8.82159 -8.76871 -6.34473 0.00563 0.45632 0.80810 1.11982 1.35635 1.41096 1.53010 1.66930 1.72671 2.02778 2.16893 2.59165 3.01940 3.23534 3.71282 3.81662 3.91840 4.12548 4.17573 4.30574 4.34339 4.46609 4.50356 4.53399 4.63883 4.65214 4.78395 4.97011 5.01481 5.05251 5.11941 5.28879 5.29987 5.35144 5.39609 5.45421 5.52770 5.65160 5.66064 5.68763 5.79847 5.88309 6.01479 6.04835 6.13058 6.18903 6.33336 6.63635 6.87603 6.93077 6.99460 7.41986 8.17080 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.002187 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.700683 B =12798.077641 C =13599.967886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.098 4.098 4 C -0.099 4.099 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.154 4.154 8 C 0.157 3.843 9 N -0.673 5.673 10 C 0.698 3.302 11 O -0.613 6.613 12 N -0.720 5.720 13 C 0.214 3.786 14 C -0.238 4.238 15 C -0.072 4.072 16 C -0.207 4.207 17 C 0.092 3.908 18 C -0.503 4.503 19 H 0.079 0.921 20 C 0.049 3.951 21 N -0.799 5.799 22 Si 0.972 3.028 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.257 1.257 26 C -0.251 4.251 27 C -0.059 4.059 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.418 0.582 36 H 0.407 0.593 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.294 0.706 42 H 0.097 0.903 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.463 11.895 -5.740 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.101 4.101 4 C -0.118 4.118 5 C -0.157 4.157 6 C -0.126 4.126 7 C -0.175 4.175 8 C 0.061 3.939 9 N -0.320 5.320 10 C 0.398 3.602 11 O -0.494 6.494 12 N -0.375 5.375 13 C 0.091 3.909 14 C -0.240 4.240 15 C -0.091 4.091 16 C -0.227 4.227 17 C 0.090 3.910 18 C -0.531 4.531 19 H 0.097 0.903 20 C -0.170 4.170 21 N -0.422 5.422 22 Si 0.792 3.208 23 H -0.185 1.185 24 H -0.189 1.189 25 H -0.181 1.181 26 C -0.271 4.271 27 C -0.078 4.078 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.257 0.743 36 H 0.243 0.757 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.831 12.693 -5.046 21.676 hybrid contribution 0.291 -1.729 -0.035 1.754 sum -16.540 10.963 -5.081 20.484 Atomic orbital electron populations 1.24591 0.94840 1.03655 0.96680 1.21677 0.96065 0.94966 1.03247 1.19039 0.90209 0.95464 1.05391 1.21441 1.00970 0.90673 0.98673 1.21375 0.93808 0.99155 1.01334 1.21369 0.95067 0.97587 0.98603 1.21471 1.01290 0.91925 1.02807 1.17826 0.90506 0.85151 1.00396 1.42440 1.16722 1.12494 1.60331 1.16139 0.80957 0.84163 0.78910 1.90847 1.68778 1.35323 1.54450 1.45476 1.19496 1.08967 1.63521 1.19600 0.81241 0.93248 0.96815 1.19079 1.11409 0.95307 0.98163 1.20695 0.98157 0.93206 0.97068 1.21019 1.04864 0.96293 1.00505 1.17930 0.88792 0.92787 0.91503 1.19834 1.40624 0.98031 0.94568 0.90264 1.26781 0.90289 1.06020 0.93953 1.69935 1.28741 1.41559 1.02012 0.85365 0.79858 0.76245 0.79370 1.18491 1.18889 1.18091 1.21090 1.09528 0.94644 1.01801 1.20676 0.95776 0.94916 0.96428 0.86724 0.86181 0.86536 0.82866 0.83061 0.84340 0.85729 0.74332 0.75691 0.92786 0.92140 0.87838 0.89305 0.89551 0.88492 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 14.15 66.66 0.94 -0.99 16 2 C -0.14 -2.34 9.53 23.61 0.22 -2.12 16 3 C -0.10 -2.03 5.88 -20.02 -0.12 -2.15 16 4 C -0.10 -1.68 9.40 22.51 0.21 -1.47 16 5 C -0.14 -2.31 10.03 22.25 0.22 -2.09 16 6 C -0.11 -2.28 10.03 22.30 0.22 -2.05 16 7 C -0.15 -4.23 8.73 22.36 0.20 -4.04 16 8 C 0.16 4.03 6.41 38.45 0.25 4.28 16 9 N -0.67 -16.64 5.11 -316.51 -1.62 -18.25 16 10 C 0.70 21.69 8.43 179.06 1.51 23.20 16 11 O -0.61 -23.41 13.46 -4.00 -0.05 -23.46 16 12 N -0.72 -21.25 5.55 -482.30 -2.68 -23.93 16 13 C 0.21 7.33 5.79 85.63 0.50 7.82 16 14 C -0.24 -9.39 5.27 -19.68 -0.10 -9.49 16 15 C -0.07 -3.15 9.67 22.22 0.21 -2.94 16 16 C -0.21 -10.40 8.79 22.73 0.20 -10.20 16 17 C 0.09 4.80 5.57 -21.29 -0.12 4.68 16 18 C -0.50 -26.18 8.96 23.46 0.21 -25.97 16 19 H 0.08 4.00 8.01 -2.91 -0.02 3.97 16 20 C 0.05 2.39 4.79 85.26 0.41 2.80 16 21 N -0.80 -40.34 11.74 21.83 0.26 -40.08 16 22 Si 0.97 36.26 29.66 68.60 2.03 38.29 16 23 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 26 C -0.25 -11.78 9.80 22.73 0.22 -11.56 16 27 C -0.06 -2.43 9.67 22.22 0.21 -2.21 16 28 H 0.11 1.05 6.04 -2.91 -0.02 1.03 16 29 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.12 1.76 6.77 -2.91 -0.02 1.74 16 31 H 0.15 1.65 6.17 -2.91 -0.02 1.63 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.12 4.04 5.80 -2.91 -0.02 4.03 16 35 H 0.42 7.77 7.29 -92.71 -0.68 7.09 16 36 H 0.41 10.49 8.48 -92.71 -0.79 9.70 16 37 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 38 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 39 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.09 4.66 6.50 -2.91 -0.02 4.64 16 41 H 0.29 13.24 8.30 -92.70 -0.77 12.47 16 42 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -63.33 365.59 2.94 -60.38 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.40 Total: 41.54 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 5.40 Total: -34.50 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -4.04 Total: -82.26 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -63.33 2.94 -60.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311111784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.215 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds