Wall clock time and date at job start Tue Mar 31 2020 13:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 C 1.50707 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.33817 * 124.52129 * 90.00080 * 4 3 2 6 6 C 1.37472 * 115.09845 * 180.02562 * 5 4 3 7 7 C 1.36651 * 113.29806 * 359.97438 * 6 5 4 8 8 C 1.46581 * 125.45961 * 180.02562 * 7 6 5 9 9 O 1.21710 * 119.99712 * 6.24021 * 8 7 6 10 10 N 1.34770 * 120.00097 * 186.24442 * 8 7 6 11 11 C 1.47422 * 125.65071 * 5.93943 * 10 8 7 12 12 C 1.54909 * 104.83585 * 155.89024 * 11 10 8 13 13 C 1.55156 * 101.57932 * 37.01034 * 12 11 10 14 14 C 1.47029 * 125.64788 * 185.96313 * 10 8 7 15 15 H 1.08994 * 110.01109 * 300.52947 * 14 10 8 16 16 C 1.52994 * 109.88011 * 61.62077 * 14 10 8 17 17 N 1.46496 * 109.47547 * 286.26770 * 16 14 10 18 18 C 1.36931 * 120.00208 * 172.44798 * 17 16 14 19 19 H 1.08000 * 120.00183 * 0.02562 * 18 17 16 20 20 C 1.38820 * 120.00057 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46966 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47141 * 300.00014 * 22 20 18 25 25 H 1.48498 * 109.46864 * 60.00068 * 22 20 18 26 26 S 1.70618 * 124.52268 * 270.34794 * 4 3 2 27 27 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47051 * 300.00743 * 1 2 3 29 29 H 1.09006 * 109.46852 * 60.00209 * 1 2 3 30 30 H 1.08998 * 109.47051 * 239.99257 * 2 1 3 31 31 H 1.09006 * 109.46852 * 119.99791 * 2 1 3 32 32 H 1.09000 * 109.47199 * 59.99753 * 3 2 1 33 33 H 1.09001 * 109.47089 * 299.99203 * 3 2 1 34 34 H 1.08000 * 122.45034 * 0.05089 * 5 4 3 35 35 H 1.08001 * 123.34813 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.36275 * 37.05326 * 11 10 8 37 37 H 1.09001 * 110.45946 * 274.78015 * 11 10 8 38 38 H 1.09001 * 111.00702 * 278.94045 * 12 11 10 39 39 H 1.08999 * 111.00569 * 155.08053 * 12 11 10 40 40 H 1.09000 * 110.72449 * 206.13504 * 13 12 11 41 41 H 1.09000 * 110.87470 * 82.93186 * 13 12 11 42 42 H 1.09006 * 109.46833 * 166.26776 * 16 14 10 43 43 H 1.08997 * 109.47442 * 46.27571 * 16 14 10 44 44 H 0.97007 * 119.99603 * 352.45571 * 17 16 14 45 45 H 0.97003 * 119.99913 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3059 1.4422 -1.1016 6 6 5.6620 1.4416 -0.8759 7 6 5.9891 1.4419 0.4508 8 6 7.3519 1.4419 0.9906 9 8 8.3035 1.5562 0.2405 10 7 7.5511 1.3152 2.3175 11 6 6.5057 1.0465 3.3216 12 6 7.2552 0.3935 4.5096 13 6 8.5913 1.1821 4.5063 14 6 8.8471 1.4226 3.0035 15 1 9.5358 0.6700 2.6196 16 6 9.4333 2.8199 2.7924 17 7 9.9264 2.9402 1.4182 18 6 10.3550 4.1529 0.9482 19 1 10.3298 5.0206 1.5907 20 6 10.8217 4.2670 -0.3542 21 7 10.8518 3.2097 -1.1374 22 14 11.4056 5.9214 -0.9956 23 1 11.8518 5.7766 -2.4045 24 1 10.2910 6.9003 -0.9269 25 1 12.5387 6.4023 -0.1650 26 16 4.5134 1.4340 1.4067 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8901 34 1 3.8838 1.4429 -2.0957 35 1 6.3957 1.4410 -1.6684 36 1 5.7609 0.3598 2.9192 37 1 6.0322 1.9764 3.6367 38 1 7.4273 -0.6674 4.3274 39 1 6.7143 0.5452 5.4437 40 1 9.3923 0.5858 4.9432 41 1 8.4848 2.1290 5.0356 42 1 10.2568 2.9775 3.4890 43 1 8.6608 3.5684 2.9681 44 1 9.9492 2.1608 0.8411 45 1 10.5483 2.3506 -0.8045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324166466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:33 Heat of formation + Delta-G solvation = 12.900163 kcal Electronic energy + Delta-G solvation = -25409.153578 eV Core-core repulsion = 21939.664159 eV Total energy + Delta-G solvation = -3469.489419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92042 -38.24905 -36.88445 -35.02739 -34.44354 -31.79596 -31.24052 -30.18585 -28.55079 -26.89845 -24.80439 -23.89944 -22.88383 -22.07362 -21.67731 -21.41131 -19.66452 -18.21700 -17.89922 -16.82325 -16.44293 -15.93407 -15.57690 -15.13177 -14.62664 -14.29149 -13.99166 -13.89203 -13.45884 -13.44750 -13.27305 -13.15540 -12.90526 -12.78472 -12.63964 -12.27028 -11.99427 -11.91400 -11.65070 -11.56333 -11.49141 -11.38737 -11.03264 -10.91617 -10.65947 -10.55691 -10.48446 -10.34322 -9.81797 -9.32459 -8.88132 -8.65119 -8.53427 -8.48475 -8.16558 -6.62409 -5.77728 -2.73758 0.67070 1.55910 1.97805 2.57127 3.20870 3.63687 3.66887 3.69262 3.86397 4.47429 4.50829 4.54452 4.66834 4.75410 4.87272 4.90470 5.05390 5.11084 5.22065 5.28599 5.36223 5.39230 5.45140 5.48840 5.49919 5.62874 5.68217 5.75055 5.78936 5.87048 5.87577 5.93505 5.96587 6.00370 6.11556 6.17614 6.26321 6.40845 6.48579 6.51625 6.77703 6.94020 7.84216 8.06148 8.63967 9.15376 9.69170 10.51512 10.69829 11.73496 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.004023 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.168703 B = 6957.707271 C = 8616.110443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.048 4.048 4 C -0.217 4.217 5 C -0.147 4.147 6 C -0.057 4.057 7 C -0.243 4.243 8 C 0.593 3.407 9 O -0.470 6.470 10 N -0.614 5.614 11 C 0.088 3.912 12 C -0.126 4.126 13 C -0.124 4.124 14 C 0.131 3.869 15 H 0.074 0.926 16 C 0.151 3.849 17 N -0.735 5.735 18 C -0.333 4.333 19 H 0.054 0.946 20 C -0.043 4.043 21 N -0.942 5.942 22 Si 1.076 2.924 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.298 1.298 26 S 0.194 5.806 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.752 -9.166 9.842 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.087 4.087 4 C -0.336 4.336 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.364 4.364 8 C 0.380 3.620 9 O -0.342 6.342 10 N -0.351 5.351 11 C -0.037 4.037 12 C -0.164 4.164 13 C -0.162 4.162 14 C 0.028 3.972 15 H 0.092 0.908 16 C 0.022 3.978 17 N -0.388 5.388 18 C -0.464 4.464 19 H 0.072 0.928 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.908 3.092 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.226 1.226 26 S 0.462 5.538 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.226 0.774 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.926 -8.130 9.629 23.577 hybrid contribution -0.489 -0.726 -0.366 0.949 sum -20.415 -8.855 9.263 24.104 Atomic orbital electron populations 1.21782 0.95466 1.01824 1.01917 1.21561 0.95750 0.95786 1.02713 1.20191 0.87550 0.97746 1.03249 1.24458 1.01027 1.08894 0.99177 1.19916 0.92592 1.05911 0.99380 1.20803 0.96188 0.96483 0.95507 1.24626 0.96437 1.17540 0.97757 1.16560 0.86923 0.77769 0.80794 1.90844 1.40734 1.46256 1.56384 1.48249 1.08813 1.72859 1.05164 1.22402 0.91334 1.00151 0.89772 1.22716 0.96323 0.99913 0.97481 1.22641 0.97515 1.01013 0.95059 1.21904 0.84752 0.99567 0.90993 0.90763 1.20938 0.95340 0.91961 0.89586 1.42854 1.76890 1.10284 1.08803 1.19939 1.39811 0.88039 0.98630 0.92829 1.25586 1.00915 1.05015 0.92707 1.70697 1.49483 1.00674 1.37902 0.83317 0.75589 0.74243 0.76017 1.21196 1.22712 1.22608 1.83037 0.94398 1.69092 1.07252 0.92544 0.92652 0.92598 0.91520 0.91782 0.90875 0.90115 0.84375 0.82830 0.90545 0.91178 0.90526 0.89796 0.89948 0.90198 0.96406 0.96307 0.77383 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 3 C -0.05 -0.42 5.65 -27.88 -0.16 -0.57 16 4 C -0.22 -2.54 5.53 -35.86 -0.20 -2.73 16 5 C -0.15 -1.94 10.00 -41.41 -0.41 -2.36 16 6 C -0.06 -0.95 10.02 -40.43 -0.41 -1.36 16 7 C -0.24 -4.19 6.34 -36.79 -0.23 -4.43 16 8 C 0.59 12.25 7.51 -12.90 -0.10 12.16 16 9 O -0.47 -12.14 12.97 5.18 0.07 -12.07 16 10 N -0.61 -10.66 3.06 -164.58 -0.50 -11.16 16 11 C 0.09 1.08 5.27 -2.53 -0.01 1.06 16 12 C -0.13 -1.22 7.09 -24.58 -0.17 -1.40 16 13 C -0.12 -1.49 6.46 -24.90 -0.16 -1.65 16 14 C 0.13 2.31 3.05 -66.95 -0.20 2.11 16 15 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.15 3.39 5.62 -4.05 -0.02 3.37 16 17 N -0.74 -20.96 4.41 -59.91 -0.26 -21.22 16 18 C -0.33 -10.44 9.99 -15.06 -0.15 -10.59 16 19 H 0.05 1.65 7.83 -52.49 -0.41 1.24 16 20 C -0.04 -1.39 5.50 -17.43 -0.10 -1.48 16 21 N -0.94 -32.06 13.70 55.49 0.76 -31.30 16 22 Si 1.08 28.30 29.92 -169.99 -5.09 23.22 16 23 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 26 S 0.19 2.39 18.62 -107.50 -2.00 0.39 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 36 H 0.08 0.84 5.79 -39.48 -0.23 0.61 16 37 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 42 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.38 11.49 3.72 -40.82 -0.15 11.34 16 45 H 0.27 9.17 6.46 -40.82 -0.26 8.90 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -38.31 369.33 -10.59 -48.90 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.01 Total: 7.19 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.12 Total: -9.50 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.01 Total: -63.69 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: -5.09 Total: 23.22 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.00 Total: 0.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.31 -10.59 -48.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324166466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.800 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds