Wall clock time and date at job start Tue Mar 31 2020 13:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 C 1.50707 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.33817 * 124.52129 * 90.00080 * 4 3 2 6 6 C 1.37472 * 115.09845 * 180.02562 * 5 4 3 7 7 C 1.36651 * 113.29806 * 359.97438 * 6 5 4 8 8 C 1.46581 * 125.45961 * 180.02562 * 7 6 5 9 9 O 1.21710 * 119.99712 * 6.24021 * 8 7 6 10 10 N 1.34770 * 120.00097 * 186.24442 * 8 7 6 11 11 C 1.47422 * 125.65071 * 5.93943 * 10 8 7 12 12 C 1.54909 * 104.83585 * 155.89024 * 11 10 8 13 13 C 1.55156 * 101.57932 * 37.01034 * 12 11 10 14 14 C 1.47029 * 125.64788 * 185.96313 * 10 8 7 15 15 H 1.08994 * 110.01109 * 300.52947 * 14 10 8 16 16 C 1.52994 * 109.88011 * 61.62077 * 14 10 8 17 17 N 1.46496 * 109.47547 * 286.26770 * 16 14 10 18 18 C 1.36931 * 120.00208 * 172.44798 * 17 16 14 19 19 H 1.08000 * 120.00183 * 0.02562 * 18 17 16 20 20 C 1.38820 * 120.00057 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46966 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47141 * 300.00014 * 22 20 18 25 25 H 1.48498 * 109.46864 * 60.00068 * 22 20 18 26 26 S 1.70618 * 124.52268 * 270.34794 * 4 3 2 27 27 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47051 * 300.00743 * 1 2 3 29 29 H 1.09006 * 109.46852 * 60.00209 * 1 2 3 30 30 H 1.08998 * 109.47051 * 239.99257 * 2 1 3 31 31 H 1.09006 * 109.46852 * 119.99791 * 2 1 3 32 32 H 1.09000 * 109.47199 * 59.99753 * 3 2 1 33 33 H 1.09001 * 109.47089 * 299.99203 * 3 2 1 34 34 H 1.08000 * 122.45034 * 0.05089 * 5 4 3 35 35 H 1.08001 * 123.34813 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.36275 * 37.05326 * 11 10 8 37 37 H 1.09001 * 110.45946 * 274.78015 * 11 10 8 38 38 H 1.09001 * 111.00702 * 278.94045 * 12 11 10 39 39 H 1.08999 * 111.00569 * 155.08053 * 12 11 10 40 40 H 1.09000 * 110.72449 * 206.13504 * 13 12 11 41 41 H 1.09000 * 110.87470 * 82.93186 * 13 12 11 42 42 H 1.09006 * 109.46833 * 166.26776 * 16 14 10 43 43 H 1.08997 * 109.47442 * 46.27571 * 16 14 10 44 44 H 0.97007 * 119.99603 * 352.45571 * 17 16 14 45 45 H 0.97003 * 119.99913 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3059 1.4422 -1.1016 6 6 5.6620 1.4416 -0.8759 7 6 5.9891 1.4419 0.4508 8 6 7.3519 1.4419 0.9906 9 8 8.3035 1.5562 0.2405 10 7 7.5511 1.3152 2.3175 11 6 6.5057 1.0465 3.3216 12 6 7.2552 0.3935 4.5096 13 6 8.5913 1.1821 4.5063 14 6 8.8471 1.4226 3.0035 15 1 9.5358 0.6700 2.6196 16 6 9.4333 2.8199 2.7924 17 7 9.9264 2.9402 1.4182 18 6 10.3550 4.1529 0.9482 19 1 10.3298 5.0206 1.5907 20 6 10.8217 4.2670 -0.3542 21 7 10.8518 3.2097 -1.1374 22 14 11.4056 5.9214 -0.9956 23 1 11.8518 5.7766 -2.4045 24 1 10.2910 6.9003 -0.9269 25 1 12.5387 6.4023 -0.1650 26 16 4.5134 1.4340 1.4067 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8901 34 1 3.8838 1.4429 -2.0957 35 1 6.3957 1.4410 -1.6684 36 1 5.7609 0.3598 2.9192 37 1 6.0322 1.9764 3.6367 38 1 7.4273 -0.6674 4.3274 39 1 6.7143 0.5452 5.4437 40 1 9.3923 0.5858 4.9432 41 1 8.4848 2.1290 5.0356 42 1 10.2568 2.9775 3.4890 43 1 8.6608 3.5684 2.9681 44 1 9.9492 2.1608 0.8411 45 1 10.5483 2.3506 -0.8045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324166466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:32 Heat of formation + Delta-G solvation = -12.229170 kcal Electronic energy + Delta-G solvation = -25410.243268 eV Core-core repulsion = 21939.664159 eV Total energy + Delta-G solvation = -3470.579108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31348 -39.36364 -38.22982 -36.61454 -35.75193 -33.49471 -32.76801 -31.15097 -30.20691 -27.88792 -26.51947 -25.13071 -24.55435 -23.61662 -22.48989 -22.31044 -21.00939 -19.50498 -19.41650 -18.78156 -17.71211 -17.23491 -16.95914 -16.10183 -15.83116 -15.64665 -15.57427 -15.22419 -15.18258 -14.79904 -14.47588 -14.36312 -14.16904 -13.91275 -13.66422 -13.52069 -13.31292 -13.01571 -12.74009 -12.58716 -12.57795 -12.50526 -12.35703 -12.22563 -12.06922 -11.88819 -11.68906 -11.66450 -11.41729 -11.21684 -10.91678 -10.88367 -9.87077 -9.56716 -9.44432 -8.95150 -8.32486 -5.21284 -0.52231 0.43733 0.88881 1.37576 1.49474 1.63164 1.79394 1.89130 2.22244 2.72612 3.41124 3.46578 3.54335 3.66010 3.75920 3.92041 4.05529 4.11775 4.16568 4.25216 4.26612 4.26834 4.39887 4.46818 4.62076 4.66336 4.68233 4.71511 4.76765 4.83907 4.91306 4.97690 5.00874 5.02957 5.08240 5.14175 5.22952 5.28134 5.31051 5.40258 5.44931 5.46619 5.56855 6.45799 6.61093 7.06214 7.38323 8.21880 8.33209 9.21048 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.004023 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.168703 B = 6957.707271 C = 8616.110443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.049 4.049 4 C -0.199 4.199 5 C -0.163 4.163 6 C -0.070 4.070 7 C -0.297 4.297 8 C 0.579 3.421 9 O -0.543 6.543 10 N -0.614 5.614 11 C 0.076 3.924 12 C -0.110 4.110 13 C -0.113 4.113 14 C 0.130 3.870 15 H 0.049 0.951 16 C 0.147 3.853 17 N -0.753 5.753 18 C -0.340 4.340 19 H 0.055 0.945 20 C -0.109 4.109 21 N -0.972 5.972 22 Si 1.130 2.870 23 H -0.291 1.291 24 H -0.282 1.282 25 H -0.273 1.273 26 S 0.274 5.726 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.027 0.973 43 H 0.010 0.990 44 H 0.376 0.624 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.037 -8.957 12.788 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.088 4.088 4 C -0.319 4.319 5 C -0.192 4.192 6 C -0.104 4.104 7 C -0.416 4.416 8 C 0.368 3.632 9 O -0.421 6.421 10 N -0.349 5.349 11 C -0.047 4.047 12 C -0.148 4.148 13 C -0.151 4.151 14 C 0.026 3.974 15 H 0.067 0.933 16 C 0.020 3.980 17 N -0.405 5.405 18 C -0.472 4.472 19 H 0.073 0.927 20 C -0.301 4.301 21 N -0.619 5.619 22 Si 0.955 3.045 23 H -0.217 1.217 24 H -0.209 1.209 25 H -0.199 1.199 26 S 0.543 5.457 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.175 0.825 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.028 0.972 44 H 0.216 0.784 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.262 -7.940 12.693 27.663 hybrid contribution 0.399 -0.829 -1.189 1.503 sum -22.863 -8.769 11.504 27.055 Atomic orbital electron populations 1.21762 0.94096 1.02383 1.02502 1.21551 0.96890 0.94709 1.02506 1.20387 0.84737 0.98944 1.04752 1.25016 1.02864 1.05398 0.98607 1.19953 0.90975 1.07224 1.01085 1.20825 0.97440 0.97141 0.94976 1.24523 0.97313 1.20672 0.99135 1.17221 0.87700 0.76740 0.81553 1.90790 1.43152 1.49866 1.58319 1.48383 1.10144 1.71292 1.05037 1.22826 0.90801 1.01488 0.89546 1.22777 0.94417 0.99670 0.97897 1.22658 0.99833 1.02506 0.90125 1.21916 0.84770 0.95621 0.95079 0.93278 1.21158 0.95180 0.94984 0.86724 1.43148 1.77156 1.09146 1.11060 1.20352 1.38727 0.89192 0.98885 0.92677 1.27290 1.01412 1.07880 0.93501 1.70819 1.51716 1.00777 1.38632 0.82640 0.76284 0.70238 0.75369 1.21692 1.20867 1.19908 1.82504 0.90391 1.67181 1.05575 0.92071 0.91846 0.92264 0.92190 0.91674 0.89111 0.88922 0.82505 0.86072 0.89116 0.89884 0.89605 0.85540 0.87893 0.89117 0.95580 0.97190 0.78438 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 3 C -0.05 -0.67 5.65 29.85 0.17 -0.51 16 4 C -0.20 -4.24 5.53 24.68 0.14 -4.11 16 5 C -0.16 -4.29 10.00 21.08 0.21 -4.07 16 6 C -0.07 -2.49 10.02 21.72 0.22 -2.27 16 7 C -0.30 -10.68 6.34 24.08 0.15 -10.52 16 8 C 0.58 25.58 7.51 86.42 0.65 26.23 16 9 O -0.54 -30.91 12.97 -4.38 -0.06 -30.97 16 10 N -0.61 -21.70 3.06 -792.83 -2.43 -24.13 16 11 C 0.08 1.67 5.27 86.86 0.46 2.13 16 12 C -0.11 -1.67 7.09 31.99 0.23 -1.44 16 13 C -0.11 -2.42 6.46 31.78 0.21 -2.21 16 14 C 0.13 4.67 3.05 45.34 0.14 4.81 16 15 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 16 C 0.15 6.83 5.62 86.38 0.49 7.32 16 17 N -0.75 -45.37 4.41 -343.46 -1.51 -46.89 16 18 C -0.34 -22.15 9.99 84.04 0.84 -21.31 16 19 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 20 C -0.11 -7.24 5.50 84.86 0.47 -6.78 16 21 N -0.97 -69.79 13.70 21.65 0.30 -69.49 16 22 Si 1.13 58.42 29.92 68.60 2.05 60.47 16 23 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 24 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 26 S 0.27 6.20 18.62 -56.49 -1.05 5.15 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 36 H 0.09 1.73 5.79 -10.30 -0.06 1.67 16 37 H 0.08 1.65 7.93 -2.39 -0.02 1.63 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.09 1.79 7.85 -2.39 -0.02 1.77 16 42 H 0.03 1.18 8.11 -2.38 -0.02 1.16 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.38 24.23 3.72 -92.70 -0.34 23.89 16 45 H 0.25 18.40 6.46 -92.71 -0.60 17.80 16 Total: -1.00 -92.15 369.33 3.30 -88.85 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.76 Total: 31.61 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.25 Total: -14.60 kcal Atomic # 7 Polarization: -136.86 SS G_CDS: -3.65 Total: -140.51 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.06 Total: -30.97 kcal Atomic # 14 Polarization: 58.42 SS G_CDS: 2.05 Total: 60.47 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.05 Total: 5.15 kcal Total: -92.15 3.30 -88.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324166466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.618 kcal (2) G-P(sol) polarization free energy of solvation -92.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds