Wall clock time and date at job start Tue Mar 31 2020 13:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 C 1.52997 * 109.47301 * 65.69663 * 3 2 1 5 5 C 1.53002 * 109.46837 * 305.69435 * 3 2 1 6 6 N 1.46499 * 109.47108 * 185.70067 * 3 2 1 7 7 C 1.34773 * 119.99950 * 297.82327 * 6 3 2 8 8 S 1.71208 * 119.99913 * 5.13291 * 7 6 3 9 9 N 1.34776 * 120.00337 * 185.13304 * 7 6 3 10 10 C 1.46500 * 120.00304 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47240 * 179.97438 * 10 9 7 12 12 C 1.38322 * 119.96946 * 269.98037 * 11 10 9 13 13 C 1.38275 * 120.14033 * 180.02562 * 12 11 10 14 14 C 1.38125 * 120.06868 * 359.67660 * 13 12 11 15 15 C 1.38855 * 119.93105 * 0.59656 * 14 13 12 16 16 O 1.35744 * 120.07099 * 179.69991 * 15 14 13 17 17 C 1.34828 * 117.00026 * 354.13686 * 16 15 14 18 18 H 1.08001 * 120.00285 * 5.02276 * 17 16 15 19 19 C 1.38655 * 119.99978 * 185.03155 * 17 16 15 20 20 N 1.31556 * 120.00004 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99982 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47295 * 90.00186 * 21 19 17 23 23 H 1.48501 * 109.46815 * 210.00051 * 21 19 17 24 24 H 1.48494 * 109.47031 * 329.99465 * 21 19 17 25 25 C 1.38087 * 119.96335 * 89.99906 * 11 10 9 26 26 H 1.09003 * 109.47231 * 300.00626 * 1 2 3 27 27 H 1.09008 * 109.47053 * 60.00316 * 1 2 3 28 28 H 1.08994 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46848 * 239.99455 * 2 1 3 30 30 H 1.08996 * 109.46738 * 119.99429 * 2 1 3 31 31 H 1.09004 * 109.46613 * 184.44544 * 4 3 2 32 32 H 1.09000 * 109.46986 * 304.44463 * 4 3 2 33 33 H 1.08996 * 109.46796 * 64.45042 * 4 3 2 34 34 H 1.08994 * 109.47576 * 305.34354 * 5 3 2 35 35 H 1.09008 * 109.46699 * 65.34031 * 5 3 2 36 36 H 1.08999 * 109.47071 * 185.33609 * 5 3 2 37 37 H 0.97001 * 120.00177 * 117.82077 * 6 3 2 38 38 H 0.97005 * 119.99844 * 359.97438 * 9 7 6 39 39 H 1.09003 * 109.46893 * 60.00238 * 10 9 7 40 40 H 1.08998 * 109.47195 * 299.99787 * 10 9 7 41 41 H 1.08005 * 119.93034 * 0.02562 * 12 11 10 42 42 H 1.08006 * 119.96628 * 179.97438 * 13 12 11 43 43 H 1.08000 * 120.03596 * 180.32052 * 14 13 12 44 44 H 0.97002 * 119.99990 * 180.02562 * 20 19 17 45 45 H 1.07993 * 120.03368 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6503 2.1213 1.3146 5 6 1.4165 2.2038 -1.1715 6 7 3.4986 1.4447 -0.1372 7 6 4.2653 0.8671 0.8088 8 16 3.5336 0.0170 2.1023 9 7 5.6080 0.9587 0.7366 10 6 6.4414 0.3303 1.7646 11 6 7.8949 0.5776 1.4532 12 6 8.5953 -0.3188 0.6663 13 6 9.9293 -0.0956 0.3788 14 6 10.5649 1.0273 0.8715 15 6 9.8662 1.9262 1.6664 16 8 10.4898 3.0276 2.1571 17 6 11.8163 3.1287 1.9380 18 1 12.3197 2.3958 1.3249 19 6 12.5342 4.1734 2.4999 20 7 13.8286 4.2717 2.2866 21 14 11.6633 5.4412 3.5600 22 1 11.6791 4.9968 4.9768 23 1 12.3606 6.7471 3.4431 24 1 10.2582 5.5877 3.1027 25 6 8.5265 1.6988 1.9541 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 1.9439 3.1705 1.2827 32 1 0.5717 2.0498 1.4546 33 1 2.1578 1.6270 2.1430 34 1 1.6144 1.6679 -2.0998 35 1 0.3398 2.2841 -1.0208 36 1 1.8507 3.2019 -1.2286 37 1 3.9125 1.8619 -0.9089 38 1 6.0226 1.4400 0.0035 39 1 6.2511 -0.7429 1.7806 40 1 6.2004 0.7567 2.7384 41 1 8.0991 -1.1950 0.2756 42 1 10.4735 -0.7977 -0.2355 43 1 11.6054 1.2038 0.6423 44 1 14.3309 5.0023 2.6800 45 1 7.9792 2.3984 2.5684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338286420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:54 Heat of formation + Delta-G solvation = 12.282959 kcal Electronic energy + Delta-G solvation = -24268.193562 eV Core-core repulsion = 20798.677379 eV Total energy + Delta-G solvation = -3469.516183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98229 -39.39353 -37.74333 -36.43256 -33.53210 -32.51187 -31.04788 -29.85577 -29.41073 -27.81000 -26.17855 -25.21859 -24.22068 -23.64721 -21.98248 -21.01292 -19.79591 -18.67821 -17.84946 -17.48687 -16.93514 -15.67021 -15.50249 -15.27858 -15.06079 -14.92892 -14.62840 -14.42208 -14.03608 -13.91289 -13.56808 -13.26434 -12.91840 -12.72249 -12.59191 -12.37658 -12.29091 -12.20729 -11.93247 -11.68946 -11.55019 -11.53920 -11.25638 -11.05039 -10.96428 -10.88962 -10.80061 -10.69115 -10.27592 -9.54873 -9.20220 -8.99964 -8.49405 -7.66544 -7.59140 -7.05331 -6.53104 -4.20867 1.34035 1.56408 1.96240 2.04760 2.58191 3.14256 3.18953 3.31723 3.44872 4.13662 4.30248 4.44962 4.53444 4.57989 4.77798 4.91585 4.99254 5.09143 5.16881 5.30539 5.31377 5.37443 5.47740 5.53229 5.57198 5.64197 5.65554 5.71164 5.77702 5.90075 5.92946 5.96077 6.03784 6.15218 6.28667 6.34174 6.48180 6.56214 6.59611 6.73300 6.88070 6.99328 7.10188 7.20420 7.39552 7.64706 7.89701 8.81373 9.41168 10.54070 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002538 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.410249 B =11028.844334 C =11708.310620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.184 3.816 4 C -0.189 4.189 5 C -0.159 4.159 6 N -0.684 5.684 7 C 0.564 3.436 8 S -0.638 6.638 9 N -0.671 5.671 10 C 0.172 3.828 11 C -0.082 4.082 12 C -0.185 4.185 13 C -0.077 4.077 14 C -0.209 4.209 15 C 0.156 3.844 16 O -0.214 6.214 17 C -0.393 4.393 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.260 1.260 25 C -0.169 4.169 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.400 0.600 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.135 0.865 44 H 0.281 0.719 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.534 -5.169 -7.834 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.199 4.199 3 C 0.100 3.900 4 C -0.248 4.248 5 C -0.216 4.216 6 N -0.314 5.314 7 C 0.202 3.798 8 S -0.510 6.510 9 N -0.299 5.299 10 C 0.050 3.950 11 C -0.083 4.083 12 C -0.204 4.204 13 C -0.096 4.096 14 C -0.229 4.229 15 C 0.103 3.897 16 O -0.119 6.119 17 C -0.468 4.468 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.189 4.189 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.153 0.847 44 H 0.091 0.909 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.874 -5.441 -6.685 23.511 hybrid contribution 0.836 1.495 -1.212 2.098 sum -21.038 -3.946 -7.897 22.815 Atomic orbital electron populations 1.21824 0.95588 1.01617 1.01393 1.22563 0.95913 0.95302 1.06100 1.20529 0.75423 0.97364 0.96702 1.22747 1.02849 0.99738 0.99508 1.22182 1.02338 0.99909 0.97193 1.45235 1.07959 1.56018 1.22226 1.22147 0.84059 0.83920 0.89658 1.93078 1.74585 1.53746 1.29604 1.45350 1.02886 1.53018 1.28617 1.20559 0.84838 0.99221 0.90367 1.19254 0.93718 0.95588 0.99768 1.20570 0.95043 1.00713 1.04089 1.20819 0.94216 0.96344 0.98173 1.21394 1.01893 0.96593 1.03015 1.19052 0.91669 0.86633 0.92339 1.83574 1.24128 1.35608 1.68546 1.20760 0.79044 1.14011 1.32987 0.87560 1.24479 0.94820 0.97650 0.96953 1.69640 1.05895 1.32372 1.43344 0.86177 0.80395 0.79728 0.80591 1.19709 1.20687 1.18418 1.20104 0.93169 0.99358 1.06237 0.92287 0.93354 0.92762 0.92994 0.85310 0.93629 0.91403 0.86607 0.92048 0.89916 0.92164 0.76826 0.76330 0.88848 0.88832 0.87194 0.86871 0.84747 0.90885 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.16 -1.49 4.81 -26.73 -0.13 -1.62 16 3 C 0.18 1.55 0.83 -131.82 -0.11 1.44 16 4 C -0.19 -1.84 8.22 37.16 0.31 -1.53 16 5 C -0.16 -0.95 7.89 37.16 0.29 -0.66 16 6 N -0.68 -5.86 5.11 -49.30 -0.25 -6.11 16 7 C 0.56 6.36 7.49 -86.92 -0.65 5.71 16 8 S -0.64 -9.26 22.06 -107.50 -2.37 -11.64 16 9 N -0.67 -7.16 5.55 -63.21 -0.35 -7.52 16 10 C 0.17 2.16 5.25 -5.20 -0.03 2.13 16 11 C -0.08 -1.21 5.25 -104.65 -0.55 -1.76 16 12 C -0.18 -2.69 9.70 -39.54 -0.38 -3.08 16 13 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 14 C -0.21 -4.14 9.17 -39.39 -0.36 -4.50 16 15 C 0.16 3.31 6.65 -39.11 -0.26 3.05 16 16 O -0.21 -5.34 8.59 0.07 0.00 -5.34 16 17 C -0.39 -10.59 9.95 30.89 0.31 -10.28 16 18 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 19 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -24.51 13.96 55.48 0.77 -23.73 16 21 Si 0.91 21.00 28.62 -169.99 -4.86 16.14 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 25 C -0.17 -3.00 9.65 -39.39 -0.38 -3.38 16 26 H 0.06 0.45 6.50 -51.93 -0.34 0.11 16 27 H 0.05 0.30 6.46 -51.92 -0.34 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.13 1.57 4.68 -30.02 -0.14 1.43 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 6.39 -51.93 -0.33 0.25 16 33 H 0.12 1.45 4.64 -30.65 -0.14 1.31 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.45 6.67 -51.92 -0.35 0.10 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 2.45 8.49 -40.82 -0.35 2.10 16 38 H 0.40 3.66 8.48 -40.82 -0.35 3.31 16 39 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 44 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -29.53 367.23 -9.88 -39.41 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.25 Total: 8.49 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.10 Total: -15.24 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.17 Total: -37.36 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: 0.00 Total: -5.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.14 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -2.37 Total: -11.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.53 -9.88 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338286420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.692 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds