Wall clock time and date at job start Tue Mar 31 2020 13:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 C 1.52997 * 109.47301 * 65.69663 * 3 2 1 5 5 C 1.53002 * 109.46837 * 305.69435 * 3 2 1 6 6 N 1.46499 * 109.47108 * 185.70067 * 3 2 1 7 7 C 1.34773 * 119.99950 * 297.82327 * 6 3 2 8 8 S 1.71208 * 119.99913 * 5.13291 * 7 6 3 9 9 N 1.34776 * 120.00337 * 185.13304 * 7 6 3 10 10 C 1.46500 * 120.00304 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47240 * 179.97438 * 10 9 7 12 12 C 1.38322 * 119.96946 * 269.98037 * 11 10 9 13 13 C 1.38275 * 120.14033 * 180.02562 * 12 11 10 14 14 C 1.38125 * 120.06868 * 359.67660 * 13 12 11 15 15 C 1.38855 * 119.93105 * 0.59656 * 14 13 12 16 16 O 1.35744 * 120.07099 * 179.69991 * 15 14 13 17 17 C 1.34828 * 117.00026 * 354.13686 * 16 15 14 18 18 H 1.08001 * 120.00285 * 5.02276 * 17 16 15 19 19 C 1.38655 * 119.99978 * 185.03155 * 17 16 15 20 20 N 1.31556 * 120.00004 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99982 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47295 * 90.00186 * 21 19 17 23 23 H 1.48501 * 109.46815 * 210.00051 * 21 19 17 24 24 H 1.48494 * 109.47031 * 329.99465 * 21 19 17 25 25 C 1.38087 * 119.96335 * 89.99906 * 11 10 9 26 26 H 1.09003 * 109.47231 * 300.00626 * 1 2 3 27 27 H 1.09008 * 109.47053 * 60.00316 * 1 2 3 28 28 H 1.08994 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46848 * 239.99455 * 2 1 3 30 30 H 1.08996 * 109.46738 * 119.99429 * 2 1 3 31 31 H 1.09004 * 109.46613 * 184.44544 * 4 3 2 32 32 H 1.09000 * 109.46986 * 304.44463 * 4 3 2 33 33 H 1.08996 * 109.46796 * 64.45042 * 4 3 2 34 34 H 1.08994 * 109.47576 * 305.34354 * 5 3 2 35 35 H 1.09008 * 109.46699 * 65.34031 * 5 3 2 36 36 H 1.08999 * 109.47071 * 185.33609 * 5 3 2 37 37 H 0.97001 * 120.00177 * 117.82077 * 6 3 2 38 38 H 0.97005 * 119.99844 * 359.97438 * 9 7 6 39 39 H 1.09003 * 109.46893 * 60.00238 * 10 9 7 40 40 H 1.08998 * 109.47195 * 299.99787 * 10 9 7 41 41 H 1.08005 * 119.93034 * 0.02562 * 12 11 10 42 42 H 1.08006 * 119.96628 * 179.97438 * 13 12 11 43 43 H 1.08000 * 120.03596 * 180.32052 * 14 13 12 44 44 H 0.97002 * 119.99990 * 180.02562 * 20 19 17 45 45 H 1.07993 * 120.03368 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6503 2.1213 1.3146 5 6 1.4165 2.2038 -1.1715 6 7 3.4986 1.4447 -0.1372 7 6 4.2653 0.8671 0.8088 8 16 3.5336 0.0170 2.1023 9 7 5.6080 0.9587 0.7366 10 6 6.4414 0.3303 1.7646 11 6 7.8949 0.5776 1.4532 12 6 8.5953 -0.3188 0.6663 13 6 9.9293 -0.0956 0.3788 14 6 10.5649 1.0273 0.8715 15 6 9.8662 1.9262 1.6664 16 8 10.4898 3.0276 2.1571 17 6 11.8163 3.1287 1.9380 18 1 12.3197 2.3958 1.3249 19 6 12.5342 4.1734 2.4999 20 7 13.8286 4.2717 2.2866 21 14 11.6633 5.4412 3.5600 22 1 11.6791 4.9968 4.9768 23 1 12.3606 6.7471 3.4431 24 1 10.2582 5.5877 3.1027 25 6 8.5265 1.6988 1.9541 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 1.9439 3.1705 1.2827 32 1 0.5717 2.0498 1.4546 33 1 2.1578 1.6270 2.1430 34 1 1.6144 1.6679 -2.0998 35 1 0.3398 2.2841 -1.0208 36 1 1.8507 3.2019 -1.2286 37 1 3.9125 1.8619 -0.9089 38 1 6.0226 1.4400 0.0035 39 1 6.2511 -0.7429 1.7806 40 1 6.2004 0.7567 2.7384 41 1 8.0991 -1.1950 0.2756 42 1 10.4735 -0.7977 -0.2355 43 1 11.6054 1.2038 0.6423 44 1 14.3309 5.0023 2.6800 45 1 7.9792 2.3984 2.5684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338286420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:54 Heat of formation + Delta-G solvation = -5.045811 kcal Electronic energy + Delta-G solvation = -24268.944994 eV Core-core repulsion = 20798.677379 eV Total energy + Delta-G solvation = -3470.267614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11848 -40.60596 -39.00192 -37.64277 -34.56338 -34.36142 -32.22055 -31.07396 -30.41843 -28.46147 -27.54496 -26.88593 -24.93223 -24.55907 -23.39401 -22.47160 -20.63599 -19.82230 -19.48768 -18.80483 -18.01691 -16.91899 -16.80560 -16.43232 -16.15930 -15.95915 -15.67806 -15.64473 -15.43119 -15.13978 -14.91535 -14.43488 -14.22031 -13.95515 -13.82777 -13.50130 -13.20137 -13.12353 -12.80177 -12.74737 -12.60364 -12.50440 -12.47354 -12.36333 -12.21498 -12.16744 -11.97194 -11.58574 -11.43752 -11.34721 -10.94272 -10.03933 -9.88617 -9.17268 -8.69535 -8.52301 -8.12160 -6.25253 0.23747 0.42145 0.60450 0.96861 1.30427 1.33758 1.49501 1.64598 2.25309 2.55869 2.79337 2.94128 3.13434 3.65661 3.83520 3.94913 4.02399 4.13465 4.23446 4.37521 4.43716 4.48588 4.56851 4.60938 4.66819 4.71386 4.76614 4.83833 4.89036 4.99269 5.07428 5.11952 5.14542 5.18490 5.28732 5.33729 5.44780 5.52638 5.57734 5.64571 5.70353 5.72456 5.81354 5.85810 5.95555 6.15217 6.43657 6.82124 7.55366 8.58974 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002538 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.410249 B =11028.844334 C =11708.310620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.156 4.156 3 C 0.183 3.817 4 C -0.187 4.187 5 C -0.153 4.153 6 N -0.666 5.666 7 C 0.579 3.421 8 S -0.700 6.700 9 N -0.664 5.664 10 C 0.185 3.815 11 C -0.065 4.065 12 C -0.156 4.156 13 C -0.074 4.074 14 C -0.225 4.225 15 C 0.119 3.881 16 O -0.244 6.244 17 C -0.398 4.398 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.166 4.166 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.412 0.588 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.285 0.715 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.501 -5.842 -9.444 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.098 3.902 4 C -0.246 4.246 5 C -0.211 4.211 6 N -0.296 5.296 7 C 0.214 3.786 8 S -0.573 6.573 9 N -0.292 5.292 10 C 0.062 3.938 11 C -0.066 4.066 12 C -0.174 4.174 13 C -0.092 4.092 14 C -0.245 4.245 15 C 0.070 3.930 16 O -0.152 6.152 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.193 1.193 24 H -0.187 1.187 25 C -0.186 4.186 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.250 0.750 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.883 -6.130 -8.347 26.952 hybrid contribution 1.507 1.415 -0.864 2.241 sum -23.376 -4.715 -9.212 25.564 Atomic orbital electron populations 1.21798 0.94326 1.01832 1.02148 1.22434 0.97069 0.95490 1.04595 1.20635 0.75094 0.97153 0.97275 1.22668 1.03241 0.99479 0.99242 1.22158 1.02717 0.99969 0.96221 1.45261 1.08137 1.54420 1.21787 1.21732 0.84037 0.83590 0.89240 1.93302 1.75490 1.56241 1.32288 1.45058 1.02522 1.53072 1.28577 1.20348 0.83291 0.99736 0.90466 1.19433 0.94802 0.94067 0.98326 1.21050 0.94109 1.00886 1.01395 1.21149 0.95074 0.95268 0.97712 1.21425 1.01154 0.98092 1.03802 1.19574 0.93040 0.86804 0.93605 1.83520 1.22839 1.37944 1.70887 1.20696 0.80332 1.13710 1.32717 0.89842 1.25247 0.95483 0.99613 0.98398 1.69722 1.07165 1.33756 1.45529 0.85255 0.79038 0.77813 0.78861 1.19287 1.19306 1.18683 1.20292 0.91773 1.00416 1.06109 0.92562 0.91490 0.92915 0.93039 0.88063 0.93504 0.90460 0.89278 0.90935 0.88961 0.91346 0.74911 0.74981 0.88029 0.89672 0.83259 0.83820 0.87193 0.90566 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.18 71.98 0.66 -1.22 16 2 C -0.16 -2.62 4.81 30.59 0.15 -2.47 16 3 C 0.18 2.60 0.83 3.60 0.00 2.60 16 4 C -0.19 -3.33 8.22 71.98 0.59 -2.74 16 5 C -0.15 -1.27 7.89 71.98 0.57 -0.70 16 6 N -0.67 -9.44 5.11 -309.89 -1.58 -11.02 16 7 C 0.58 11.66 7.49 179.06 1.34 13.00 16 8 S -0.70 -19.76 22.06 -56.49 -1.25 -21.00 16 9 N -0.66 -12.07 5.55 -353.91 -1.97 -14.03 16 10 C 0.18 4.07 5.25 85.63 0.45 4.52 16 11 C -0.07 -1.72 5.25 -19.88 -0.10 -1.83 16 12 C -0.16 -3.86 9.70 22.30 0.22 -3.65 16 13 C -0.07 -2.20 10.04 22.25 0.22 -1.98 16 14 C -0.23 -8.99 9.17 22.39 0.21 -8.79 16 15 C 0.12 5.13 6.65 22.58 0.15 5.28 16 16 O -0.24 -12.66 8.59 -22.65 -0.19 -12.85 16 17 C -0.40 -22.62 9.95 67.92 0.68 -21.94 16 18 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 19 C 0.01 0.64 5.49 84.83 0.47 1.10 16 20 N -0.92 -53.84 13.96 21.61 0.30 -53.54 16 21 Si 0.97 44.47 28.62 68.60 1.96 46.43 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 C -0.17 -5.72 9.65 22.39 0.22 -5.50 16 26 H 0.06 0.77 6.50 -2.39 -0.02 0.75 16 27 H 0.07 0.63 6.46 -2.38 -0.02 0.61 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 2.39 4.68 -16.32 -0.08 2.31 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.19 6.39 -2.39 -0.02 1.18 16 33 H 0.09 2.18 4.64 -15.92 -0.07 2.11 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.64 6.67 -2.38 -0.02 0.62 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.41 3.51 8.49 -92.71 -0.79 2.72 16 38 H 0.41 5.94 8.48 -92.70 -0.79 5.16 16 39 H 0.10 2.19 7.93 -2.39 -0.02 2.17 16 40 H 0.09 2.12 7.93 -2.39 -0.02 2.10 16 41 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 43 H 0.11 4.91 5.64 -2.91 -0.02 4.90 16 44 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -68.64 367.23 2.41 -66.23 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.67 Total: 24.11 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 5.81 Total: -24.31 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.25 Total: -78.60 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.19 Total: -12.85 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.96 Total: 46.43 kcal Atomic # 16 Polarization: -19.76 SS G_CDS: -1.25 Total: -21.00 kcal Total: -68.64 2.41 -66.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338286420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.181 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds