Wall clock time and date at job start Tue Mar 31 2020 14:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.53001 * 109.47337 * 119.99936 * 2 1 3 5 5 H 1.09003 * 109.47241 * 303.71056 * 4 2 1 6 6 C 1.52996 * 109.47219 * 63.71244 * 4 2 1 7 7 N 1.46498 * 109.47009 * 174.99980 * 6 4 2 8 8 C 1.34783 * 120.00107 * 180.02562 * 7 6 4 9 9 O 1.21286 * 119.99643 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00402 * 180.02562 * 8 7 6 11 11 S 1.81003 * 109.47443 * 179.97438 * 10 8 7 12 12 C 1.76198 * 100.00122 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99933 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00090 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99484 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00123 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47055 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46857 * 120.00227 * 16 14 12 19 19 H 1.48505 * 109.47202 * 240.00083 * 16 14 12 20 20 N 1.46506 * 109.47409 * 183.71598 * 4 2 1 21 21 C 1.39662 * 120.00307 * 124.90889 * 20 4 2 22 22 C 1.38912 * 120.07481 * 172.86583 * 21 20 4 23 23 C 1.38113 * 119.92588 * 180.27780 * 22 21 20 24 24 C 1.38287 * 120.07203 * 359.51718 * 23 22 21 25 25 C 1.38286 * 120.14899 * 0.46017 * 24 23 22 26 26 C 1.38098 * 120.07769 * 359.79449 * 25 24 23 27 27 H 1.08999 * 109.47089 * 299.99585 * 1 2 3 28 28 H 1.08994 * 109.47130 * 60.00403 * 1 2 3 29 29 H 1.09002 * 109.46785 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47289 * 239.99683 * 2 1 3 31 31 H 1.08994 * 109.47017 * 175.48577 * 3 2 1 32 32 H 1.09001 * 109.46803 * 295.48396 * 3 2 1 33 33 H 1.09000 * 109.46775 * 55.48490 * 3 2 1 34 34 H 1.09002 * 109.47293 * 295.00106 * 6 4 2 35 35 H 1.09004 * 109.47050 * 55.00023 * 6 4 2 36 36 H 0.97001 * 120.00501 * 0.02562 * 7 6 4 37 37 H 1.09000 * 109.47566 * 300.00101 * 10 8 7 38 38 H 1.09004 * 109.47034 * 59.99830 * 10 8 7 39 39 H 0.97008 * 119.99323 * 179.97438 * 15 14 12 40 40 H 0.97004 * 119.99776 * 304.91178 * 20 4 2 41 41 H 1.07995 * 120.03956 * 359.97438 * 22 21 20 42 42 H 1.08000 * 119.96215 * 179.72473 * 23 22 21 43 43 H 1.07996 * 119.92280 * 180.21537 * 24 23 22 44 44 H 1.08000 * 119.96321 * 179.77116 * 25 24 23 45 45 H 1.07999 * 120.04398 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6234 -0.2472 2.1380 6 6 1.6078 -2.1881 1.2035 7 7 2.1955 -2.9060 2.3372 8 6 1.9510 -4.2212 2.5021 9 8 1.2439 -4.8102 1.7120 10 6 2.5551 -4.9595 3.6686 11 16 2.0439 -6.6950 3.6144 12 6 2.8679 -7.3017 5.0487 13 1 3.4656 -6.6337 5.6513 14 6 2.7482 -8.6379 5.4049 15 7 2.0194 -9.4518 4.6707 16 14 3.6213 -9.2809 6.9259 17 1 4.3694 -8.1732 7.5727 18 1 2.6201 -9.8241 7.8788 19 1 4.5679 -10.3566 6.5357 20 7 3.5023 -0.6442 1.2949 21 6 4.1393 -0.1200 2.4218 22 6 5.5227 -0.1812 2.5311 23 6 6.1489 0.3330 3.6496 24 6 5.4011 0.9173 4.6554 25 6 4.0237 0.9803 4.5495 26 6 3.3907 0.4634 3.4363 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1269 1.4436 0.0809 32 1 1.7442 1.9324 -0.9277 33 1 1.6121 1.9791 0.8468 34 1 0.5208 -2.2486 1.2592 35 1 1.9494 -2.6387 0.2715 36 1 2.7607 -2.4349 2.9693 37 1 3.6420 -4.8987 3.6136 38 1 2.2127 -4.5092 4.6003 39 1 1.9360 -10.3858 4.9195 40 1 4.0282 -0.9573 0.5422 41 1 6.1076 -0.6347 1.7447 42 1 7.2242 0.2818 3.7372 43 1 5.8935 1.3218 5.5273 44 1 3.4423 1.4340 5.3385 45 1 2.3150 0.5125 3.3544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347601118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:27 Heat of formation + Delta-G solvation = -20.791720 kcal Electronic energy + Delta-G solvation = -24498.298585 eV Core-core repulsion = 21027.348177 eV Total energy + Delta-G solvation = -3470.950408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13246 -38.97348 -37.68510 -34.24779 -33.87690 -32.41065 -31.05189 -30.31780 -29.02812 -27.82690 -26.69660 -25.46011 -23.59803 -22.75599 -21.66942 -20.54880 -19.95685 -17.91626 -17.74176 -16.61623 -16.33000 -16.01859 -15.88764 -15.09582 -14.78937 -14.67806 -14.55937 -14.23225 -14.01695 -13.80689 -13.55650 -13.32874 -13.11762 -12.94971 -12.83518 -12.53976 -12.47059 -12.06924 -11.75646 -11.57419 -11.51875 -11.33082 -11.10639 -11.05614 -10.99880 -10.79169 -10.74496 -10.26405 -9.78376 -9.37685 -9.07060 -9.06090 -8.84132 -8.21196 -7.59647 -6.47901 -6.20210 -3.90297 1.29600 1.46897 3.01868 3.11605 3.16397 3.22815 3.29768 3.35254 3.73730 3.75808 4.22157 4.34017 4.52988 4.57872 4.77216 4.80384 4.96159 5.00334 5.13984 5.15130 5.19237 5.28064 5.30773 5.33738 5.37617 5.49690 5.54009 5.56857 5.61985 5.67281 5.76727 5.81582 5.88709 5.92433 5.96603 5.98145 6.14336 6.17972 6.36740 6.51274 6.64476 6.69034 7.15092 7.49273 7.61901 7.74872 8.37461 8.64722 9.25404 10.87295 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003087 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.705547 B = 9066.762912 C =10842.210489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.142 4.142 4 C 0.140 3.860 5 H 0.097 0.903 6 C 0.107 3.893 7 N -0.733 5.733 8 C 0.531 3.469 9 O -0.520 6.520 10 C -0.152 4.152 11 S -0.060 6.060 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.739 5.739 21 C 0.218 3.782 22 C -0.195 4.195 23 C -0.072 4.072 24 C -0.181 4.181 25 C -0.071 4.071 26 C -0.203 4.203 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.267 0.733 40 H 0.401 0.599 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 25.833 -6.384 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.199 4.199 4 C 0.034 3.966 5 H 0.115 0.885 6 C -0.018 4.018 7 N -0.388 5.388 8 C 0.317 3.683 9 O -0.395 6.395 10 C -0.303 4.303 11 S 0.166 5.834 12 C -0.682 4.682 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.367 5.367 21 C 0.116 3.884 22 C -0.217 4.217 23 C -0.090 4.090 24 C -0.201 4.201 25 C -0.090 4.090 26 C -0.225 4.225 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.235 0.765 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.996 24.662 -7.719 25.919 hybrid contribution 1.872 0.312 1.885 2.675 sum 3.869 24.973 -5.835 25.936 Atomic orbital electron populations 1.21899 0.94170 1.02644 1.02201 1.21419 0.96385 0.96779 0.97679 1.21765 1.01584 0.95069 1.01509 1.21374 0.80885 0.94575 0.99798 0.88516 1.21765 0.98802 0.90846 0.90404 1.45902 1.53561 1.09796 1.29507 1.20301 0.80385 0.81196 0.86369 1.90696 1.37030 1.66941 1.44789 1.23516 1.03680 1.04711 0.98377 1.85360 1.66148 0.95081 1.36797 1.22917 1.35558 0.97536 1.12224 0.90893 1.24993 0.95327 0.95734 0.97562 1.70036 1.37402 1.05120 1.37777 0.86117 0.79144 0.78793 0.81458 1.19588 1.20567 1.20572 1.44644 1.05106 1.69193 1.17794 1.17815 0.91536 0.91824 0.87270 1.20611 0.92565 1.07876 1.00686 1.20893 0.99496 0.95680 0.92959 1.20908 0.94091 1.05000 1.00109 1.20898 0.94577 0.96966 0.96564 1.20715 0.99475 1.06444 0.95889 0.92402 0.92199 0.91791 0.90612 0.92180 0.92796 0.92800 0.90547 0.91529 0.76746 0.89375 0.89343 0.92272 0.76452 0.86365 0.86347 0.86642 0.86361 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.92 37.16 0.33 -0.67 16 2 C -0.10 -0.69 2.68 -90.62 -0.24 -0.93 16 3 C -0.14 -0.92 9.07 37.16 0.34 -0.58 16 4 C 0.14 1.11 2.02 -67.93 -0.14 0.97 16 5 H 0.10 0.77 5.32 -51.93 -0.28 0.49 16 6 C 0.11 1.20 4.97 -4.04 -0.02 1.18 16 7 N -0.73 -10.15 5.39 -60.29 -0.32 -10.48 16 8 C 0.53 10.19 7.85 -10.99 -0.09 10.10 16 9 O -0.52 -11.94 15.86 5.55 0.09 -11.86 16 10 C -0.15 -3.19 6.16 36.00 0.22 -2.97 16 11 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 12 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 13 H 0.07 2.01 7.80 -52.48 -0.41 1.61 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 16 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.74 -5.84 3.61 -52.16 -0.19 -6.03 16 21 C 0.22 2.00 6.09 -83.79 -0.51 1.48 16 22 C -0.19 -1.82 9.90 -39.38 -0.39 -2.21 16 23 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 24 C -0.18 -1.66 10.04 -39.55 -0.40 -2.06 16 25 C -0.07 -0.65 10.04 -39.61 -0.40 -1.05 16 26 C -0.20 -1.87 9.31 -39.38 -0.37 -2.23 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.47 6.64 -51.93 -0.34 0.13 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.43 7.36 -51.93 -0.38 0.05 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.90 6.78 -51.93 -0.35 0.54 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 4.96 7.65 -40.82 -0.31 4.65 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.40 2.94 8.85 -40.82 -0.36 2.58 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 1.00 5.76 -52.49 -0.30 0.70 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -34.02 383.44 -9.95 -43.97 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.95 Total: 4.69 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.86 Total: -13.16 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.22 Total: -42.18 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.02 -9.95 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347601118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.177 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds