Wall clock time and date at job start Tue Mar 31 2020 14:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.53001 * 109.47337 * 119.99936 * 2 1 3 5 5 H 1.09003 * 109.47241 * 303.71056 * 4 2 1 6 6 C 1.52996 * 109.47219 * 63.71244 * 4 2 1 7 7 N 1.46498 * 109.47009 * 174.99980 * 6 4 2 8 8 C 1.34783 * 120.00107 * 180.02562 * 7 6 4 9 9 O 1.21286 * 119.99643 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00402 * 180.02562 * 8 7 6 11 11 S 1.81003 * 109.47443 * 179.97438 * 10 8 7 12 12 C 1.76198 * 100.00122 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99933 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00090 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99484 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00123 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47055 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46857 * 120.00227 * 16 14 12 19 19 H 1.48505 * 109.47202 * 240.00083 * 16 14 12 20 20 N 1.46506 * 109.47409 * 183.71598 * 4 2 1 21 21 C 1.39662 * 120.00307 * 124.90889 * 20 4 2 22 22 C 1.38912 * 120.07481 * 172.86583 * 21 20 4 23 23 C 1.38113 * 119.92588 * 180.27780 * 22 21 20 24 24 C 1.38287 * 120.07203 * 359.51718 * 23 22 21 25 25 C 1.38286 * 120.14899 * 0.46017 * 24 23 22 26 26 C 1.38098 * 120.07769 * 359.79449 * 25 24 23 27 27 H 1.08999 * 109.47089 * 299.99585 * 1 2 3 28 28 H 1.08994 * 109.47130 * 60.00403 * 1 2 3 29 29 H 1.09002 * 109.46785 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47289 * 239.99683 * 2 1 3 31 31 H 1.08994 * 109.47017 * 175.48577 * 3 2 1 32 32 H 1.09001 * 109.46803 * 295.48396 * 3 2 1 33 33 H 1.09000 * 109.46775 * 55.48490 * 3 2 1 34 34 H 1.09002 * 109.47293 * 295.00106 * 6 4 2 35 35 H 1.09004 * 109.47050 * 55.00023 * 6 4 2 36 36 H 0.97001 * 120.00501 * 0.02562 * 7 6 4 37 37 H 1.09000 * 109.47566 * 300.00101 * 10 8 7 38 38 H 1.09004 * 109.47034 * 59.99830 * 10 8 7 39 39 H 0.97008 * 119.99323 * 179.97438 * 15 14 12 40 40 H 0.97004 * 119.99776 * 304.91178 * 20 4 2 41 41 H 1.07995 * 120.03956 * 359.97438 * 22 21 20 42 42 H 1.08000 * 119.96215 * 179.72473 * 23 22 21 43 43 H 1.07996 * 119.92280 * 180.21537 * 24 23 22 44 44 H 1.08000 * 119.96321 * 179.77116 * 25 24 23 45 45 H 1.07999 * 120.04398 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6234 -0.2472 2.1380 6 6 1.6078 -2.1881 1.2035 7 7 2.1955 -2.9060 2.3372 8 6 1.9510 -4.2212 2.5021 9 8 1.2439 -4.8102 1.7120 10 6 2.5551 -4.9595 3.6686 11 16 2.0439 -6.6950 3.6144 12 6 2.8679 -7.3017 5.0487 13 1 3.4656 -6.6337 5.6513 14 6 2.7482 -8.6379 5.4049 15 7 2.0194 -9.4518 4.6707 16 14 3.6213 -9.2809 6.9259 17 1 4.3694 -8.1732 7.5727 18 1 2.6201 -9.8241 7.8788 19 1 4.5679 -10.3566 6.5357 20 7 3.5023 -0.6442 1.2949 21 6 4.1393 -0.1200 2.4218 22 6 5.5227 -0.1812 2.5311 23 6 6.1489 0.3330 3.6496 24 6 5.4011 0.9173 4.6554 25 6 4.0237 0.9803 4.5495 26 6 3.3907 0.4634 3.4363 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1269 1.4436 0.0809 32 1 1.7442 1.9324 -0.9277 33 1 1.6121 1.9791 0.8468 34 1 0.5208 -2.2486 1.2592 35 1 1.9494 -2.6387 0.2715 36 1 2.7607 -2.4349 2.9693 37 1 3.6420 -4.8987 3.6136 38 1 2.2127 -4.5092 4.6003 39 1 1.9360 -10.3858 4.9195 40 1 4.0282 -0.9573 0.5422 41 1 6.1076 -0.6347 1.7447 42 1 7.2242 0.2818 3.7372 43 1 5.8935 1.3218 5.5273 44 1 3.4423 1.4340 5.3385 45 1 2.3150 0.5125 3.3544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347601118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:27 Heat of formation + Delta-G solvation = -41.788122 kcal Electronic energy + Delta-G solvation = -24499.209058 eV Core-core repulsion = 21027.348177 eV Total energy + Delta-G solvation = -3471.860881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04754 -40.17292 -38.48644 -35.31355 -34.69521 -34.59417 -31.76479 -31.56307 -30.00217 -28.64863 -27.70067 -27.33986 -24.43979 -23.46452 -22.34485 -21.77544 -20.83305 -19.83348 -18.48757 -17.84767 -17.54877 -16.96157 -16.89034 -16.77559 -16.37196 -15.87418 -15.42620 -15.21697 -14.98960 -14.83933 -14.54586 -14.48051 -14.20363 -13.99521 -13.81515 -13.55001 -13.34467 -13.17326 -12.97862 -12.92107 -12.68259 -12.58248 -12.25008 -12.16812 -11.91594 -11.73336 -11.71383 -11.42347 -11.16866 -11.08194 -10.84820 -10.30105 -10.12549 -9.75371 -8.68160 -8.36082 -8.27700 -6.14166 0.61281 0.78172 1.25566 1.40589 1.45621 1.57529 1.58398 2.22658 2.26849 2.47558 2.98087 3.06839 3.30243 3.62303 3.80575 3.92309 4.02410 4.14566 4.18392 4.23037 4.30424 4.38797 4.46172 4.46655 4.58376 4.67406 4.69954 4.78090 4.83445 4.84316 4.93886 5.03210 5.07329 5.22048 5.25227 5.37210 5.40865 5.43229 5.47092 5.48013 5.70250 5.83845 6.02440 6.18858 6.43427 6.47820 6.84495 7.05360 7.19907 8.73427 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003087 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.705547 B = 9066.762912 C =10842.210489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.136 4.136 4 C 0.153 3.847 5 H 0.103 0.897 6 C 0.106 3.894 7 N -0.707 5.707 8 C 0.533 3.467 9 O -0.564 6.564 10 C -0.130 4.130 11 S -0.145 6.145 12 C -0.547 4.547 13 H 0.080 0.920 14 C 0.014 3.986 15 N -0.910 5.910 16 Si 0.999 3.001 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.735 5.735 21 C 0.213 3.787 22 C -0.207 4.207 23 C -0.082 4.082 24 C -0.193 4.193 25 C -0.080 4.080 26 C -0.212 4.212 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.272 0.728 40 H 0.404 0.596 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 27.639 -5.377 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.193 4.193 4 C 0.046 3.954 5 H 0.121 0.879 6 C -0.019 4.019 7 N -0.360 5.360 8 C 0.319 3.681 9 O -0.442 6.442 10 C -0.281 4.281 11 S 0.082 5.918 12 C -0.695 4.695 13 H 0.099 0.901 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.198 1.198 20 N -0.364 5.364 21 C 0.110 3.890 22 C -0.230 4.230 23 C -0.101 4.101 24 C -0.213 4.213 25 C -0.099 4.099 26 C -0.235 4.235 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.245 0.755 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.038 26.529 -6.717 27.535 hybrid contribution 1.561 -0.116 1.519 2.181 sum 4.599 26.413 -5.198 27.310 Atomic orbital electron populations 1.21902 0.93937 1.02175 1.02910 1.21358 0.96466 0.96881 0.96853 1.21704 1.01092 0.94604 1.01929 1.21265 0.80992 0.92232 1.00863 0.87930 1.21984 0.98628 0.92471 0.88843 1.45671 1.52408 1.07962 1.29998 1.20006 0.80038 0.82607 0.85441 1.90686 1.39175 1.68221 1.46115 1.23356 1.04518 1.00037 1.00185 1.85503 1.67398 1.01249 1.37636 1.23232 1.35735 0.98250 1.12313 0.90147 1.26123 0.95933 0.95878 1.01135 1.70190 1.38935 1.05626 1.39924 0.84906 0.77923 0.78331 0.76793 1.18152 1.19787 1.19819 1.44607 1.04984 1.69062 1.17699 1.17895 0.91632 0.91984 0.87499 1.20800 0.92882 1.08210 1.01105 1.21150 1.00386 0.95566 0.92966 1.21163 0.94396 1.05074 1.00629 1.21162 0.94849 0.96877 0.96988 1.20883 0.99980 1.06589 0.96017 0.91892 0.91382 0.92818 0.90513 0.92782 0.92086 0.92741 0.90751 0.92113 0.75503 0.87891 0.87671 0.91941 0.76036 0.85705 0.85076 0.85438 0.84920 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.92 71.98 0.64 -1.11 16 2 C -0.10 -1.11 2.68 -10.79 -0.03 -1.14 16 3 C -0.14 -1.47 9.07 71.98 0.65 -0.82 16 4 C 0.15 2.15 2.02 44.99 0.09 2.24 16 5 H 0.10 1.40 5.32 -2.39 -0.01 1.38 16 6 C 0.11 2.24 4.97 86.38 0.43 2.67 16 7 N -0.71 -18.65 5.39 -463.06 -2.49 -21.14 16 8 C 0.53 20.24 7.85 87.65 0.69 20.93 16 9 O -0.56 -26.30 15.86 -3.05 -0.05 -26.35 16 10 C -0.13 -5.37 6.16 71.23 0.44 -4.93 16 11 S -0.14 -8.19 20.57 -56.49 -1.16 -9.35 16 12 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 13 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 14 C 0.01 0.81 5.49 84.86 0.47 1.28 16 15 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 16 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 N -0.73 -10.35 3.61 -318.95 -1.15 -11.50 16 21 C 0.21 3.52 6.09 38.22 0.23 3.75 16 22 C -0.21 -3.57 9.90 22.40 0.22 -3.34 16 23 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 24 C -0.19 -3.21 10.04 22.29 0.22 -2.99 16 25 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 26 C -0.21 -3.50 9.31 22.40 0.21 -3.29 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.74 6.64 -2.39 -0.02 0.72 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.67 7.36 -2.39 -0.02 0.65 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 1.68 6.78 -2.39 -0.02 1.67 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.41 9.33 7.65 -92.71 -0.71 8.62 16 37 H 0.10 3.94 8.14 -2.39 -0.02 3.93 16 38 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 39 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 40 H 0.40 5.28 8.85 -92.71 -0.82 4.46 16 41 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.13 1.84 5.76 -2.91 -0.02 1.82 16 Total: -1.00 -74.47 383.44 2.29 -72.18 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.53 Total: 26.18 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 5.36 Total: -20.14 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -3.36 Total: -88.62 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -74.47 2.29 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347601118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.395 kcal (2) G-P(sol) polarization free energy of solvation -74.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds