Wall clock time and date at job start Tue Mar 31 2020 14:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46890 * 2 1 4 4 C 1.52997 * 109.46662 * 119.99900 * 2 1 3 5 5 H 1.08999 * 109.47272 * 295.57567 * 4 2 1 6 6 N 1.46904 * 109.46869 * 175.58197 * 4 2 1 7 7 C 1.46894 * 110.99913 * 156.68734 * 6 4 2 8 8 C 1.53002 * 109.47144 * 183.54466 * 7 6 4 9 9 H 1.09001 * 109.46956 * 59.99976 * 8 7 6 10 10 O 1.42906 * 109.47014 * 299.99850 * 8 7 6 11 11 C 1.50702 * 109.47439 * 180.02562 * 8 7 6 12 12 H 1.08001 * 119.99934 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00118 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99786 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00104 * 179.97438 * 13 11 8 16 16 H 1.48493 * 109.46770 * 90.00099 * 15 13 11 17 17 H 1.48500 * 109.47184 * 210.00073 * 15 13 11 18 18 H 1.48500 * 109.46935 * 330.00611 * 15 13 11 19 19 C 1.50696 * 109.47449 * 55.58192 * 4 2 1 20 20 N 1.30977 * 126.43841 * 255.32319 * 19 4 2 21 21 C 1.35218 * 105.57890 * 180.11909 * 20 19 4 22 22 C 1.48438 * 126.41517 * 179.84652 * 21 20 19 23 23 N 1.33983 * 125.64192 * 359.68121 * 22 21 20 24 24 C 1.30641 * 109.78793 * 180.02562 * 23 22 21 25 25 N 1.34577 * 108.28832 * 0.02562 * 24 23 22 26 26 H 0.97000 * 126.74217 * 179.97438 * 25 24 23 27 27 N 1.31482 * 125.64830 * 179.71164 * 22 21 20 28 28 N 1.30755 * 107.17258 * 359.57802 * 21 20 19 29 29 O 1.21295 * 110.09902 * 0.26557 * 28 21 20 30 30 H 1.09000 * 109.47485 * 300.00429 * 1 2 3 31 31 H 1.09006 * 109.46922 * 60.00334 * 1 2 3 32 32 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47084 * 239.99929 * 2 1 3 34 34 H 1.09000 * 109.46969 * 181.64651 * 3 2 1 35 35 H 1.09000 * 109.47489 * 301.64840 * 3 2 1 36 36 H 1.09002 * 109.47431 * 61.64686 * 3 2 1 37 37 H 1.00898 * 111.00125 * 32.73317 * 6 4 2 38 38 H 1.08994 * 109.47552 * 303.54283 * 7 6 4 39 39 H 1.09001 * 109.47213 * 63.54600 * 7 6 4 40 40 H 0.96689 * 114.00221 * 299.99845 * 10 8 7 41 41 H 0.97002 * 119.99237 * 180.02562 * 14 13 11 42 42 H 1.07994 * 125.85692 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7428 -0.1637 2.1375 6 7 3.5051 -0.8143 1.1972 7 6 4.0707 -0.9736 2.5435 8 6 5.5983 -0.9781 2.4577 9 1 5.9408 -0.0364 2.0287 10 8 6.0257 -2.0620 1.6302 11 6 6.1786 -1.1421 3.8388 12 1 5.5233 -1.2344 4.6924 13 6 7.5459 -1.1755 4.0126 14 7 8.3438 -1.0636 2.9731 15 14 8.2652 -1.3780 5.7246 16 1 8.4421 -2.8226 6.0194 17 1 9.5816 -0.6942 5.7926 18 1 7.3436 -0.7784 6.7228 19 6 1.4502 -2.1069 1.3053 20 7 0.4843 -2.5100 2.0926 21 6 0.2939 -3.8152 1.7949 22 6 -0.6956 -4.7268 2.4219 23 7 -1.5570 -4.3951 3.3931 24 6 -2.2826 -5.4329 3.7141 25 7 -1.8992 -6.4700 2.9468 26 1 -2.2616 -7.3696 2.9639 27 7 -0.8716 -5.9936 2.1166 28 7 1.1408 -4.1225 0.8472 29 8 1.8101 -3.1538 0.5561 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1296 1.4426 -0.0295 35 1 1.6527 1.9648 -0.8748 36 1 1.7010 1.9478 0.9044 37 1 3.9020 -0.0125 0.7307 38 1 3.7447 -0.1470 3.1747 39 1 3.7281 -1.9153 2.9724 40 1 5.7555 -2.9328 1.9520 41 1 9.3058 -1.0874 3.0954 42 1 -3.0574 -5.4549 4.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363800715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:12 Heat of formation + Delta-G solvation = 109.752611 kcal Electronic energy + Delta-G solvation = -27181.325976 eV Core-core repulsion = 23202.035931 eV Total energy + Delta-G solvation = -3979.290045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.48921 -42.44569 -38.23409 -35.92694 -35.67605 -33.23460 -33.03534 -32.45509 -32.05506 -31.16940 -28.41888 -27.40470 -26.02093 -25.43953 -23.97196 -23.34219 -22.31998 -21.44599 -20.50886 -19.76943 -18.87270 -18.02568 -17.24004 -16.87563 -16.27191 -15.83432 -15.71256 -15.16486 -14.85369 -14.62791 -14.48034 -14.09043 -13.99703 -13.29553 -13.00293 -12.66185 -12.57660 -12.44238 -12.33875 -12.20376 -12.07814 -11.41424 -11.29154 -11.18593 -11.00707 -10.95244 -10.89920 -10.81840 -10.73806 -10.56432 -10.50162 -10.34311 -10.06155 -9.58857 -9.02102 -8.58142 -8.20806 -8.01657 -6.00407 -4.18750 0.76605 1.36446 1.93540 2.06156 2.90695 2.96892 3.07045 3.28797 3.35768 3.38311 3.59877 4.22625 4.34201 4.41325 4.54748 4.69793 4.85293 4.97964 5.12379 5.27825 5.33718 5.43498 5.52177 5.55821 5.65924 5.70904 5.75325 5.79107 5.95882 6.02106 6.07243 6.09282 6.17666 6.22561 6.43184 6.55755 6.77503 7.27074 7.55396 7.60643 7.76424 7.84839 8.18466 8.21113 8.84380 9.45736 9.61514 11.03696 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003549 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.881919 B = 7887.506357 C = 9653.507796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.150 4.150 4 C 0.177 3.823 5 H 0.091 0.909 6 N -0.672 5.672 7 C 0.030 3.970 8 C 0.236 3.764 9 H 0.055 0.945 10 O -0.554 6.554 11 C -0.575 4.575 12 H 0.055 0.945 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.219 3.781 20 N -0.454 5.454 21 C 0.237 3.763 22 C 0.315 3.685 23 N -0.507 5.507 24 C 0.267 3.733 25 N -0.478 5.478 26 H 0.447 0.553 27 N -0.271 5.271 28 N -0.351 5.351 29 O 0.116 5.884 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.357 0.643 38 H 0.033 0.967 39 H 0.058 0.942 40 H 0.345 0.655 41 H 0.260 0.740 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.279 -3.053 -2.954 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.207 4.207 4 C 0.064 3.936 5 H 0.109 0.891 6 N -0.307 5.307 7 C -0.098 4.098 8 C 0.177 3.823 9 H 0.073 0.927 10 O -0.356 6.356 11 C -0.613 4.613 12 H 0.073 0.927 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.003 4.003 20 N -0.187 5.187 21 C -0.036 4.036 22 C 0.033 3.967 23 N -0.235 5.235 24 C -0.032 4.032 25 N -0.199 5.199 26 H 0.293 0.707 27 N -0.104 5.104 28 N -0.055 5.055 29 O 0.050 5.950 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.180 0.820 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.188 0.812 41 H 0.070 0.930 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -21.683 -3.965 -3.930 22.390 hybrid contribution -0.315 -0.379 2.087 2.145 sum -21.998 -4.344 -1.843 22.499 Atomic orbital electron populations 1.21848 0.94325 1.01804 1.02458 1.21326 0.96328 0.96824 0.97152 1.21887 1.01801 0.94506 1.02545 1.20136 0.90829 0.82508 1.00175 0.89116 1.60332 1.00160 1.48390 1.21861 1.23077 1.00588 0.99840 0.86316 1.19314 0.84249 0.88318 0.90371 0.92721 1.86547 1.80499 1.15818 1.52717 1.21609 0.92023 1.54277 0.93387 0.92703 1.25009 0.97213 0.93875 0.96472 1.70080 1.03441 1.46733 1.29031 0.86677 0.78561 0.78341 0.84832 1.20552 1.21084 1.19845 1.28898 0.90279 0.94213 0.86898 1.72053 1.15913 1.07514 1.23264 1.21598 0.97007 0.89111 0.95835 1.19832 0.94599 0.88205 0.94083 1.70555 1.08553 1.29125 1.15242 1.26278 0.98492 0.82406 0.96020 1.48219 1.28524 1.14079 1.29051 0.70662 1.78405 1.06139 1.10920 1.14896 1.75036 1.06240 1.08648 1.15532 1.85406 1.46086 1.14375 1.49146 0.91891 0.91939 0.93282 0.89108 0.91580 0.91645 0.92184 0.81997 0.94913 0.92337 0.81216 0.92971 0.75166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.88 37.16 0.33 -1.16 16 2 C -0.10 -1.05 2.63 -90.62 -0.24 -1.29 16 3 C -0.15 -1.38 8.98 37.16 0.33 -1.05 16 4 C 0.18 2.45 2.18 -68.87 -0.15 2.30 16 5 H 0.09 1.24 7.77 -51.93 -0.40 0.84 16 6 N -0.67 -10.97 6.18 -107.96 -0.67 -11.64 16 7 C 0.03 0.60 5.11 -3.83 -0.02 0.58 16 8 C 0.24 5.79 3.00 -27.88 -0.08 5.70 16 9 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 10 O -0.55 -14.28 12.59 -35.23 -0.44 -14.73 16 11 C -0.57 -15.64 8.76 -34.44 -0.30 -15.94 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 14 N -0.86 -25.18 12.84 55.43 0.71 -24.47 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.22 3.50 5.59 -12.99 -0.07 3.43 16 20 N -0.45 -7.72 11.55 -9.88 -0.11 -7.84 16 21 C 0.24 4.13 8.16 -156.12 -1.27 2.85 16 22 C 0.31 4.92 8.08 -156.62 -1.27 3.65 16 23 N -0.51 -6.79 11.21 -12.37 -0.14 -6.93 16 24 C 0.27 2.04 13.11 -90.68 -1.19 0.85 16 25 N -0.48 -3.77 7.44 29.52 0.22 -3.55 16 26 H 0.45 1.48 8.96 -182.34 -1.63 -0.16 16 27 N -0.27 -3.74 12.83 32.11 0.41 -3.32 16 28 N -0.35 -6.28 12.20 30.97 0.38 -5.91 16 29 O 0.12 2.01 11.29 18.04 0.20 2.22 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.58 7.07 -51.93 -0.37 0.21 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.64 6.45 -51.93 -0.34 0.31 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.36 5.40 6.42 -39.29 -0.25 5.15 16 38 H 0.03 0.62 7.97 -51.93 -0.41 0.21 16 39 H 0.06 1.23 8.00 -51.93 -0.42 0.82 16 40 H 0.34 8.29 9.04 45.56 0.41 8.70 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.23 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -36.00 363.55 -8.92 -44.92 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.91 Total: 7.48 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -4.03 Total: 2.08 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.80 Total: -63.66 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.24 Total: -12.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.00 -8.92 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363800715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.675 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds