Wall clock time and date at job start Tue Mar 31 2020 14:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46890 * 2 1 4 4 C 1.52997 * 109.46662 * 119.99900 * 2 1 3 5 5 H 1.08999 * 109.47272 * 295.57567 * 4 2 1 6 6 N 1.46904 * 109.46869 * 175.58197 * 4 2 1 7 7 C 1.46894 * 110.99913 * 156.68734 * 6 4 2 8 8 C 1.53002 * 109.47144 * 183.54466 * 7 6 4 9 9 H 1.09001 * 109.46956 * 59.99976 * 8 7 6 10 10 O 1.42906 * 109.47014 * 299.99850 * 8 7 6 11 11 C 1.50702 * 109.47439 * 180.02562 * 8 7 6 12 12 H 1.08001 * 119.99934 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00118 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99786 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00104 * 179.97438 * 13 11 8 16 16 H 1.48493 * 109.46770 * 90.00099 * 15 13 11 17 17 H 1.48500 * 109.47184 * 210.00073 * 15 13 11 18 18 H 1.48500 * 109.46935 * 330.00611 * 15 13 11 19 19 C 1.50696 * 109.47449 * 55.58192 * 4 2 1 20 20 N 1.30977 * 126.43841 * 255.32319 * 19 4 2 21 21 C 1.35218 * 105.57890 * 180.11909 * 20 19 4 22 22 C 1.48438 * 126.41517 * 179.84652 * 21 20 19 23 23 N 1.33983 * 125.64192 * 359.68121 * 22 21 20 24 24 C 1.30641 * 109.78793 * 180.02562 * 23 22 21 25 25 N 1.34577 * 108.28832 * 0.02562 * 24 23 22 26 26 H 0.97000 * 126.74217 * 179.97438 * 25 24 23 27 27 N 1.31482 * 125.64830 * 179.71164 * 22 21 20 28 28 N 1.30755 * 107.17258 * 359.57802 * 21 20 19 29 29 O 1.21295 * 110.09902 * 0.26557 * 28 21 20 30 30 H 1.09000 * 109.47485 * 300.00429 * 1 2 3 31 31 H 1.09006 * 109.46922 * 60.00334 * 1 2 3 32 32 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47084 * 239.99929 * 2 1 3 34 34 H 1.09000 * 109.46969 * 181.64651 * 3 2 1 35 35 H 1.09000 * 109.47489 * 301.64840 * 3 2 1 36 36 H 1.09002 * 109.47431 * 61.64686 * 3 2 1 37 37 H 1.00898 * 111.00125 * 32.73317 * 6 4 2 38 38 H 1.08994 * 109.47552 * 303.54283 * 7 6 4 39 39 H 1.09001 * 109.47213 * 63.54600 * 7 6 4 40 40 H 0.96689 * 114.00221 * 299.99845 * 10 8 7 41 41 H 0.97002 * 119.99237 * 180.02562 * 14 13 11 42 42 H 1.07994 * 125.85692 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7428 -0.1637 2.1375 6 7 3.5051 -0.8143 1.1972 7 6 4.0707 -0.9736 2.5435 8 6 5.5983 -0.9781 2.4577 9 1 5.9408 -0.0364 2.0287 10 8 6.0257 -2.0620 1.6302 11 6 6.1786 -1.1421 3.8388 12 1 5.5233 -1.2344 4.6924 13 6 7.5459 -1.1755 4.0126 14 7 8.3438 -1.0636 2.9731 15 14 8.2652 -1.3780 5.7246 16 1 8.4421 -2.8226 6.0194 17 1 9.5816 -0.6942 5.7926 18 1 7.3436 -0.7784 6.7228 19 6 1.4502 -2.1069 1.3053 20 7 0.4843 -2.5100 2.0926 21 6 0.2939 -3.8152 1.7949 22 6 -0.6956 -4.7268 2.4219 23 7 -1.5570 -4.3951 3.3931 24 6 -2.2826 -5.4329 3.7141 25 7 -1.8992 -6.4700 2.9468 26 1 -2.2616 -7.3696 2.9639 27 7 -0.8716 -5.9936 2.1166 28 7 1.1408 -4.1225 0.8472 29 8 1.8101 -3.1538 0.5561 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1296 1.4426 -0.0295 35 1 1.6527 1.9648 -0.8748 36 1 1.7010 1.9478 0.9044 37 1 3.9020 -0.0125 0.7307 38 1 3.7447 -0.1470 3.1747 39 1 3.7281 -1.9153 2.9724 40 1 5.7555 -2.9328 1.9520 41 1 9.3058 -1.0874 3.0954 42 1 -3.0574 -5.4549 4.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363800715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:11 Heat of formation + Delta-G solvation = 79.380669 kcal Electronic energy + Delta-G solvation = -27182.643002 eV Core-core repulsion = 23202.035931 eV Total energy + Delta-G solvation = -3980.607071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.77090 -43.28047 -39.46938 -37.61494 -37.01612 -34.48413 -34.19351 -34.12017 -33.45572 -32.17832 -30.14013 -28.26544 -27.53580 -26.59463 -25.52364 -24.48199 -23.26372 -22.77583 -21.98385 -20.82857 -19.66956 -19.30764 -19.00385 -18.33438 -17.50139 -16.87617 -16.68311 -16.64323 -16.48378 -15.82558 -15.70112 -15.66406 -15.52603 -14.52788 -14.45954 -14.12812 -13.68291 -13.56537 -13.40163 -13.27560 -13.17580 -12.95029 -12.85944 -12.78875 -12.64750 -12.36411 -12.27939 -12.02628 -11.99114 -11.75672 -11.52060 -11.39441 -11.30359 -11.01458 -10.71860 -10.68219 -10.08422 -9.52961 -8.12843 -6.38012 -0.35328 0.28621 0.97783 1.27311 1.40332 1.41225 1.51601 1.70273 1.91820 2.17643 2.37253 2.46706 3.12015 3.15932 3.46782 3.66269 3.66860 3.93577 4.06182 4.14580 4.28330 4.32767 4.38797 4.39571 4.56513 4.61399 4.68035 4.78654 4.83248 4.91461 4.96509 4.99121 5.02975 5.18039 5.35750 5.42171 5.60852 5.75906 5.84364 6.06668 6.10671 6.38799 6.72673 6.73831 6.95868 7.35221 7.58089 8.91327 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003549 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.881919 B = 7887.506357 C = 9653.507796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.180 3.820 5 H 0.099 0.901 6 N -0.675 5.675 7 C 0.053 3.947 8 C 0.235 3.765 9 H 0.034 0.966 10 O -0.568 6.568 11 C -0.589 4.589 12 H 0.055 0.945 13 C 0.029 3.971 14 N -0.895 5.895 15 Si 0.955 3.045 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.221 3.779 20 N -0.466 5.466 21 C 0.233 3.767 22 C 0.285 3.715 23 N -0.549 5.549 24 C 0.294 3.706 25 N -0.457 5.457 26 H 0.467 0.533 27 N -0.301 5.301 28 N -0.372 5.372 29 O 0.102 5.898 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.027 0.973 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.365 0.635 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.349 0.651 41 H 0.262 0.738 42 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.304 -2.961 -1.733 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.204 4.204 4 C 0.067 3.933 5 H 0.116 0.884 6 N -0.312 5.312 7 C -0.076 4.076 8 C 0.177 3.823 9 H 0.052 0.948 10 O -0.371 6.371 11 C -0.627 4.627 12 H 0.073 0.927 13 C -0.174 4.174 14 N -0.532 5.532 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.001 4.001 20 N -0.199 5.199 21 C -0.040 4.040 22 C 0.004 3.996 23 N -0.279 5.279 24 C -0.004 4.004 25 N -0.180 5.180 26 H 0.319 0.681 27 N -0.135 5.135 28 N -0.078 5.078 29 O 0.038 5.962 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.190 0.810 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -23.730 -3.885 -2.713 24.199 hybrid contribution 0.179 -0.488 1.726 1.802 sum -23.551 -4.374 -0.987 23.974 Atomic orbital electron populations 1.21810 0.93496 1.00801 1.03760 1.21328 0.96854 0.97490 0.95236 1.21885 1.01393 0.93267 1.03863 1.20338 0.88929 0.81764 1.02224 0.88391 1.60132 1.01889 1.49249 1.19879 1.22588 0.97355 0.99455 0.88234 1.19222 0.87171 0.87044 0.88898 0.94815 1.86501 1.81131 1.16384 1.53075 1.22005 0.92455 1.53691 0.94592 0.92694 1.25823 0.97722 0.93558 1.00259 1.70203 1.03673 1.48053 1.31247 0.85626 0.77887 0.78234 0.80233 1.20343 1.20569 1.18941 1.29340 0.89943 0.94523 0.86247 1.72043 1.16513 1.07692 1.23700 1.22075 0.96978 0.89530 0.95376 1.19789 0.95612 0.88642 0.95603 1.70495 1.09660 1.31920 1.15779 1.27386 0.97416 0.80445 0.95113 1.48125 1.26833 1.15293 1.27701 0.68122 1.78264 1.08156 1.10517 1.16611 1.75000 1.07146 1.09103 1.16599 1.85365 1.46452 1.14697 1.49661 0.91474 0.89749 0.95376 0.89339 0.92193 0.89629 0.91563 0.81031 0.93978 0.93786 0.80676 0.92954 0.69124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.88 71.98 0.64 -2.04 16 2 C -0.09 -1.84 2.63 -10.79 -0.03 -1.87 16 3 C -0.15 -2.42 8.98 71.98 0.65 -1.78 16 4 C 0.18 4.93 2.18 44.17 0.10 5.03 16 5 H 0.10 2.59 7.77 -2.39 -0.02 2.57 16 6 N -0.67 -22.07 6.18 -495.47 -3.06 -25.14 16 7 C 0.05 2.11 5.11 86.31 0.44 2.55 16 8 C 0.23 11.73 3.00 29.85 0.09 11.82 16 9 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 10 O -0.57 -29.97 12.59 -148.98 -1.88 -31.85 16 11 C -0.59 -32.31 8.76 25.60 0.22 -32.09 16 12 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 13 C 0.03 1.64 5.40 84.65 0.46 2.09 16 14 N -0.89 -53.24 12.84 21.45 0.28 -52.96 16 15 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 C 0.22 7.20 5.59 88.36 0.49 7.70 16 20 N -0.47 -16.18 11.55 -302.50 -3.49 -19.67 16 21 C 0.23 8.36 8.16 137.30 1.12 9.48 16 22 C 0.29 8.97 8.08 137.48 1.11 10.08 16 23 N -0.55 -14.12 11.21 -193.05 -2.16 -16.28 16 24 C 0.29 3.60 13.11 180.37 2.37 5.96 16 25 N -0.46 -6.17 7.44 -60.51 -0.45 -6.62 16 26 H 0.47 1.77 8.96 -213.10 -1.91 -0.14 16 27 N -0.30 -8.19 12.83 -52.33 -0.67 -8.87 16 28 N -0.37 -13.86 12.20 -59.12 -0.72 -14.58 16 29 O 0.10 3.65 11.29 74.62 0.84 4.49 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.03 0.65 7.07 -2.39 -0.02 0.63 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.08 6.45 -2.39 -0.02 1.06 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.36 10.97 6.42 -89.70 -0.58 10.40 16 38 H 0.04 1.59 7.97 -2.39 -0.02 1.57 16 39 H 0.04 1.88 8.00 -2.39 -0.02 1.86 16 40 H 0.35 17.29 9.04 -74.06 -0.67 16.62 16 41 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.29 -0.64 8.06 -2.91 -0.02 -0.66 16 Total: -1.00 -80.73 363.55 -3.70 -84.42 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -2.06 Total: 24.47 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 7.66 Total: 16.94 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -10.29 Total: -144.12 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.03 Total: -27.36 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -80.73 -3.70 -84.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363800715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.805 kcal (2) G-P(sol) polarization free energy of solvation -80.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds