Wall clock time and date at job start Tue Mar 31 2020 12:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47204 * 2 1 4 4 C 1.38148 * 119.97451 * 100.30026 * 3 2 1 5 5 C 1.38817 * 119.94811 * 180.27388 * 4 3 2 6 6 N 1.40069 * 120.03978 * 179.72318 * 5 4 3 7 7 C 1.34774 * 119.99663 * 214.81302 * 6 5 4 8 8 O 1.21591 * 120.00451 * 355.37086 * 7 6 5 9 9 N 1.34779 * 120.00025 * 175.37202 * 7 6 5 10 10 C 1.47025 * 125.64381 * 0.04339 * 9 7 6 11 11 C 1.54325 * 107.26796 * 181.02182 * 10 9 7 12 12 C 1.55159 * 102.94346 * 22.19416 * 11 10 9 13 13 O 1.42897 * 111.00484 * 82.57016 * 12 11 10 14 14 C 1.50696 * 111.03640 * 206.40808 * 12 11 10 15 15 H 1.07995 * 120.00122 * 356.79566 * 14 12 11 16 16 C 1.37880 * 119.99854 * 176.79565 * 14 12 11 17 17 N 1.31518 * 120.00176 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00087 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46807 * 59.99974 * 18 16 14 20 20 H 1.48501 * 109.47201 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47007 * 300.00237 * 18 16 14 22 22 C 1.47420 * 125.65053 * 180.02562 * 9 7 6 23 23 C 1.38860 * 119.91721 * 359.44580 * 5 4 3 24 24 C 1.38104 * 119.95410 * 0.27863 * 23 5 4 25 25 C 1.38446 * 119.97976 * 279.99926 * 3 2 1 26 26 F 1.35102 * 119.95538 * 0.02562 * 25 3 2 27 27 H 1.09000 * 109.46610 * 299.99969 * 1 2 3 28 28 H 1.09001 * 109.46767 * 59.99733 * 1 2 3 29 29 H 1.08998 * 109.46816 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46960 * 239.99648 * 2 1 3 31 31 H 1.09001 * 109.46767 * 120.00267 * 2 1 3 32 32 H 1.07992 * 120.02331 * 0.02562 * 4 3 2 33 33 H 0.96994 * 120.00314 * 34.81079 * 6 5 4 34 34 H 1.08997 * 109.88207 * 300.43586 * 10 9 7 35 35 H 1.08995 * 109.88034 * 61.60749 * 10 9 7 36 36 H 1.09002 * 110.72048 * 263.82936 * 11 10 9 37 37 H 1.09002 * 110.72219 * 140.55684 * 11 10 9 38 38 H 0.96706 * 114.00026 * 186.34877 * 13 12 11 39 39 H 0.97003 * 119.99805 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.36918 * 37.07120 * 22 9 7 41 41 H 1.09002 * 110.46033 * 274.79010 * 22 9 7 42 42 H 1.07992 * 120.02658 * 180.29723 * 23 5 4 43 43 H 1.07999 * 119.97941 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4642 2.0002 1.1774 5 6 2.9215 3.3109 1.1778 6 7 3.3544 3.9021 2.3716 7 6 3.1367 5.2139 2.5914 8 8 2.6408 5.9023 1.7204 9 7 3.4687 5.7627 3.7767 10 6 4.0734 5.0499 4.9116 11 6 4.2499 6.0729 6.0535 12 6 3.2158 7.1734 5.6973 13 8 1.9088 6.8138 6.1493 14 6 3.6308 8.5082 6.2603 15 1 4.5189 8.5846 6.8700 16 6 2.8765 9.6320 5.9971 17 7 1.7952 9.5391 5.2542 18 14 3.3912 11.2868 6.6945 19 1 4.7439 11.6367 6.1916 20 1 2.4208 12.3270 6.2683 21 1 3.4184 11.2122 8.1773 22 6 3.2861 7.1772 4.1500 23 6 2.9548 4.0332 -0.0077 24 6 2.5275 3.4484 -1.1836 25 6 2.0667 2.1425 -1.1810 26 9 1.6492 1.5722 -2.3324 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.4423 1.4352 2.0975 33 1 3.8107 3.3676 3.0400 34 1 3.4160 4.2429 5.2352 35 1 5.0437 4.6469 4.6217 36 1 5.2612 6.4795 6.0541 37 1 4.0148 5.6201 7.0168 38 1 1.2132 7.4227 5.8657 39 1 1.2648 10.3298 5.0687 40 1 2.3580 7.5638 3.7290 41 1 4.1332 7.7732 3.8104 42 1 3.3147 5.0513 -0.0102 43 1 2.5528 4.0099 -2.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434726628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:51 Heat of formation + Delta-G solvation = -99.414288 kcal Electronic energy + Delta-G solvation = -27121.222037 eV Core-core repulsion = 23080.649122 eV Total energy + Delta-G solvation = -4040.572915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.85983 -40.48314 -38.93195 -37.42034 -34.90549 -34.40777 -33.62634 -32.23971 -30.47940 -29.93938 -28.61434 -27.77442 -25.16511 -24.25567 -23.07841 -22.57493 -21.27492 -19.73648 -19.50398 -18.07395 -17.50965 -17.15056 -16.87389 -16.31669 -15.67699 -15.37540 -15.16690 -14.71176 -14.57839 -14.30198 -14.11946 -13.90021 -13.63048 -13.33426 -13.12948 -12.92008 -12.86496 -12.72340 -12.28239 -12.03702 -11.94969 -11.69235 -11.53162 -11.22480 -11.06761 -10.98230 -10.89857 -10.68912 -10.52518 -10.26890 -10.09094 -9.67643 -9.46130 -8.95482 -8.73402 -8.46001 -8.09724 -7.74639 -6.32301 -4.41970 1.11493 1.18948 2.82728 3.19757 3.25918 3.27286 3.32743 3.72913 4.16955 4.25774 4.27049 4.49142 4.67533 4.92087 4.94642 5.13071 5.20600 5.28419 5.29529 5.32910 5.49305 5.53334 5.66313 5.68535 5.77367 5.83882 5.91910 5.98536 6.02324 6.17288 6.27476 6.30205 6.41539 6.52238 6.62382 6.77307 6.81452 7.01240 7.10744 7.23177 7.43039 7.69847 7.96942 8.27510 8.61104 8.85691 9.26373 9.35832 10.75107 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.002680 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.609862 B =10445.896603 C =10822.854945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.125 4.125 5 C 0.173 3.827 6 N -0.690 5.690 7 C 0.714 3.286 8 O -0.579 6.579 9 N -0.621 5.621 10 C 0.101 3.899 11 C -0.116 4.116 12 C 0.250 3.750 13 O -0.583 6.583 14 C -0.539 4.539 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.893 5.893 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.110 3.890 23 C -0.098 4.098 24 C -0.130 4.130 25 C 0.071 3.929 26 F -0.143 7.143 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.405 0.595 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.383 0.617 39 H 0.272 0.728 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.152 0.848 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -16.304 -7.629 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.146 4.146 5 C 0.076 3.924 6 N -0.337 5.337 7 C 0.417 3.583 8 O -0.456 6.456 9 N -0.357 5.357 10 C -0.023 4.023 11 C -0.154 4.154 12 C 0.209 3.791 13 O -0.392 6.392 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.531 5.531 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.011 4.011 23 C -0.119 4.119 24 C -0.150 4.150 25 C 0.051 3.949 26 F -0.122 7.122 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.170 0.830 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.406 -16.147 -8.091 18.220 hybrid contribution 0.085 1.096 0.226 1.122 sum 2.491 -15.051 -7.865 17.164 Atomic orbital electron populations 1.21746 0.94458 1.01821 1.02533 1.20448 0.96516 0.91686 1.03114 1.19604 1.01507 0.97101 0.91707 1.20606 1.01433 0.94740 0.97858 1.17545 0.97084 0.92190 0.85543 1.42729 1.61990 1.09718 1.19304 1.15501 0.79378 0.80875 0.82559 1.90892 1.50324 1.60644 1.43760 1.47983 1.63382 1.12923 1.11373 1.22020 0.96161 0.96235 0.87836 1.22600 1.00184 0.96025 0.96555 1.19612 0.81192 0.91142 0.87170 1.86090 1.18412 1.55799 1.78893 1.21410 1.11417 0.91774 1.33122 0.91514 1.25081 0.94521 0.99704 0.93867 1.69646 1.15520 1.30981 1.36970 0.86446 0.78500 0.82369 0.79499 1.20010 1.21062 1.19981 1.23262 1.02188 0.76599 0.99092 1.21275 0.99478 1.01524 0.89578 1.21041 1.00961 0.93324 0.99631 1.17454 1.03333 0.92472 0.81627 1.91447 1.88218 1.84918 1.47602 0.92294 0.92434 0.92242 0.90748 0.90592 0.84942 0.75920 0.92340 0.92848 0.90295 0.90597 0.76579 0.91835 0.89648 0.92105 0.83050 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.08 -0.72 5.79 -27.88 -0.16 -0.88 16 3 C -0.10 -1.11 5.14 -104.58 -0.54 -1.65 16 4 C -0.13 -1.45 9.59 -39.40 -0.38 -1.83 16 5 C 0.17 2.43 6.30 -83.65 -0.53 1.90 16 6 N -0.69 -10.05 5.30 -14.21 -0.08 -10.13 16 7 C 0.71 13.70 8.33 -86.92 -0.72 12.98 16 8 O -0.58 -13.05 14.03 5.29 0.07 -12.97 16 9 N -0.62 -12.08 3.33 -176.25 -0.59 -12.67 16 10 C 0.10 1.62 6.15 -3.06 -0.02 1.60 16 11 C -0.12 -2.15 6.13 -24.89 -0.15 -2.30 16 12 C 0.25 5.79 0.87 -89.63 -0.08 5.71 16 13 O -0.58 -14.43 13.15 -35.23 -0.46 -14.90 16 14 C -0.54 -13.56 8.26 -34.44 -0.28 -13.85 16 15 H 0.07 1.64 7.78 -52.49 -0.41 1.23 16 16 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -23.34 10.72 55.43 0.59 -22.74 16 18 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 22 C 0.11 2.54 5.50 -2.54 -0.01 2.52 16 23 C -0.10 -1.45 8.69 -39.40 -0.34 -1.79 16 24 C -0.13 -1.69 10.02 -39.54 -0.40 -2.08 16 25 C 0.07 0.89 7.24 -39.41 -0.29 0.61 16 26 F -0.14 -1.79 16.65 2.25 0.04 -1.75 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 7.94 -51.93 -0.41 0.22 16 31 H 0.08 0.56 8.00 -51.93 -0.42 0.14 16 32 H 0.13 1.23 8.03 -52.49 -0.42 0.80 16 33 H 0.41 4.66 7.82 -40.82 -0.32 4.34 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.38 9.87 7.32 45.56 0.33 10.20 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.09 2.24 7.47 -51.93 -0.39 1.85 16 41 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.15 2.52 6.22 -52.49 -0.33 2.19 16 43 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -28.82 359.10 -8.94 -37.76 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -5.29 Total: 15.33 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.63 Total: 1.75 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.07 Total: -45.54 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.39 Total: -27.87 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.82 -8.94 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434726628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.650 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds