Wall clock time and date at job start Tue Mar 31 2020 12:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47204 * 2 1 4 4 C 1.38148 * 119.97451 * 100.30026 * 3 2 1 5 5 C 1.38817 * 119.94811 * 180.27388 * 4 3 2 6 6 N 1.40069 * 120.03978 * 179.72318 * 5 4 3 7 7 C 1.34774 * 119.99663 * 214.81302 * 6 5 4 8 8 O 1.21591 * 120.00451 * 355.37086 * 7 6 5 9 9 N 1.34779 * 120.00025 * 175.37202 * 7 6 5 10 10 C 1.47025 * 125.64381 * 0.04339 * 9 7 6 11 11 C 1.54325 * 107.26796 * 181.02182 * 10 9 7 12 12 C 1.55159 * 102.94346 * 22.19416 * 11 10 9 13 13 O 1.42897 * 111.00484 * 82.57016 * 12 11 10 14 14 C 1.50696 * 111.03640 * 206.40808 * 12 11 10 15 15 H 1.07995 * 120.00122 * 356.79566 * 14 12 11 16 16 C 1.37880 * 119.99854 * 176.79565 * 14 12 11 17 17 N 1.31518 * 120.00176 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00087 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46807 * 59.99974 * 18 16 14 20 20 H 1.48501 * 109.47201 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47007 * 300.00237 * 18 16 14 22 22 C 1.47420 * 125.65053 * 180.02562 * 9 7 6 23 23 C 1.38860 * 119.91721 * 359.44580 * 5 4 3 24 24 C 1.38104 * 119.95410 * 0.27863 * 23 5 4 25 25 C 1.38446 * 119.97976 * 279.99926 * 3 2 1 26 26 F 1.35102 * 119.95538 * 0.02562 * 25 3 2 27 27 H 1.09000 * 109.46610 * 299.99969 * 1 2 3 28 28 H 1.09001 * 109.46767 * 59.99733 * 1 2 3 29 29 H 1.08998 * 109.46816 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46960 * 239.99648 * 2 1 3 31 31 H 1.09001 * 109.46767 * 120.00267 * 2 1 3 32 32 H 1.07992 * 120.02331 * 0.02562 * 4 3 2 33 33 H 0.96994 * 120.00314 * 34.81079 * 6 5 4 34 34 H 1.08997 * 109.88207 * 300.43586 * 10 9 7 35 35 H 1.08995 * 109.88034 * 61.60749 * 10 9 7 36 36 H 1.09002 * 110.72048 * 263.82936 * 11 10 9 37 37 H 1.09002 * 110.72219 * 140.55684 * 11 10 9 38 38 H 0.96706 * 114.00026 * 186.34877 * 13 12 11 39 39 H 0.97003 * 119.99805 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.36918 * 37.07120 * 22 9 7 41 41 H 1.09002 * 110.46033 * 274.79010 * 22 9 7 42 42 H 1.07992 * 120.02658 * 180.29723 * 23 5 4 43 43 H 1.07999 * 119.97941 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4642 2.0002 1.1774 5 6 2.9215 3.3109 1.1778 6 7 3.3544 3.9021 2.3716 7 6 3.1367 5.2139 2.5914 8 8 2.6408 5.9023 1.7204 9 7 3.4687 5.7627 3.7767 10 6 4.0734 5.0499 4.9116 11 6 4.2499 6.0729 6.0535 12 6 3.2158 7.1734 5.6973 13 8 1.9088 6.8138 6.1493 14 6 3.6308 8.5082 6.2603 15 1 4.5189 8.5846 6.8700 16 6 2.8765 9.6320 5.9971 17 7 1.7952 9.5391 5.2542 18 14 3.3912 11.2868 6.6945 19 1 4.7439 11.6367 6.1916 20 1 2.4208 12.3270 6.2683 21 1 3.4184 11.2122 8.1773 22 6 3.2861 7.1772 4.1500 23 6 2.9548 4.0332 -0.0077 24 6 2.5275 3.4484 -1.1836 25 6 2.0667 2.1425 -1.1810 26 9 1.6492 1.5722 -2.3324 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.4423 1.4352 2.0975 33 1 3.8107 3.3676 3.0400 34 1 3.4160 4.2429 5.2352 35 1 5.0437 4.6469 4.6217 36 1 5.2612 6.4795 6.0541 37 1 4.0148 5.6201 7.0168 38 1 1.2132 7.4227 5.8657 39 1 1.2648 10.3298 5.0687 40 1 2.3580 7.5638 3.7290 41 1 4.1332 7.7732 3.8104 42 1 3.3147 5.0513 -0.0102 43 1 2.5528 4.0099 -2.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434726628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:50 Heat of formation + Delta-G solvation = -117.520504 kcal Electronic energy + Delta-G solvation = -27122.007181 eV Core-core repulsion = 23080.649122 eV Total energy + Delta-G solvation = -4041.358059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.85763 -41.81636 -40.19549 -38.94752 -36.13047 -36.05071 -34.65318 -34.19158 -31.97344 -30.93446 -29.82821 -29.33998 -26.95251 -25.15126 -24.49013 -23.61689 -22.37015 -21.47848 -20.78251 -19.49949 -18.98279 -18.50678 -18.08471 -17.41329 -17.02702 -16.90645 -16.59832 -16.21414 -16.18966 -15.41446 -15.18452 -14.86028 -14.79723 -14.68030 -14.60809 -14.35678 -13.91771 -13.90761 -13.60444 -13.48632 -13.31688 -13.01066 -12.81300 -12.74355 -12.53213 -12.31319 -12.26799 -12.08724 -11.97672 -11.80852 -11.43711 -11.22131 -11.04916 -10.64662 -10.32603 -9.92818 -9.58220 -8.97560 -8.24719 -6.41216 0.06709 0.20393 1.41756 1.44686 1.48993 1.53154 1.96517 2.38514 2.60946 2.90223 3.01799 3.29517 3.63754 3.76377 3.79472 4.05991 4.12225 4.17215 4.23256 4.31431 4.35789 4.45780 4.50948 4.61974 4.65458 4.74611 4.94871 4.96738 5.04065 5.06670 5.09262 5.14198 5.21043 5.29661 5.31747 5.36034 5.39404 5.46358 5.46684 5.76614 5.94073 6.00653 6.10643 6.65407 6.90228 7.29411 7.36638 7.40767 8.80509 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.002680 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.609862 B =10445.896603 C =10822.854945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.093 4.093 4 C -0.111 4.111 5 C 0.152 3.848 6 N -0.668 5.668 7 C 0.710 3.290 8 O -0.622 6.622 9 N -0.626 5.626 10 C 0.102 3.898 11 C -0.111 4.111 12 C 0.232 3.768 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.126 3.874 23 C -0.118 4.118 24 C -0.135 4.135 25 C 0.065 3.935 26 F -0.143 7.143 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.423 0.577 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.374 0.626 39 H 0.269 0.731 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.125 0.875 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -19.051 -6.771 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.131 4.131 5 C 0.057 3.943 6 N -0.317 5.317 7 C 0.413 3.587 8 O -0.503 6.503 9 N -0.361 5.361 10 C -0.020 4.020 11 C -0.148 4.148 12 C 0.191 3.809 13 O -0.396 6.396 14 C -0.593 4.593 15 H 0.089 0.911 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.194 1.194 22 C 0.002 3.998 23 C -0.139 4.139 24 C -0.154 4.154 25 C 0.045 3.955 26 F -0.121 7.121 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.183 0.817 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.223 0.777 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.427 -18.967 -7.216 20.580 hybrid contribution -0.245 1.889 -0.114 1.908 sum 3.182 -17.078 -7.330 18.855 Atomic orbital electron populations 1.21751 0.94353 1.02863 1.01602 1.20555 0.96460 0.89963 1.04677 1.19965 1.00232 0.98310 0.90963 1.20866 0.99638 0.93477 0.99169 1.17749 0.98447 0.93257 0.84846 1.42370 1.61509 1.07954 1.19912 1.15664 0.79047 0.82103 0.81908 1.90870 1.52123 1.62163 1.45102 1.47876 1.63930 1.11817 1.12490 1.22231 0.98529 0.95497 0.85715 1.22603 0.99050 0.95072 0.98096 1.19866 0.81430 0.92507 0.87050 1.86080 1.18947 1.55522 1.79027 1.21786 1.11498 0.92995 1.33061 0.91143 1.25825 0.94621 1.02859 0.94204 1.69773 1.16388 1.31426 1.37962 0.85530 0.78094 0.78615 0.78925 1.19477 1.21337 1.19431 1.22752 0.99268 0.78675 0.99085 1.21129 1.01047 1.00750 0.90987 1.21117 1.00836 0.93898 0.99544 1.17606 1.03228 0.92394 0.82222 1.91449 1.88187 1.84804 1.47710 0.92740 0.93874 0.90275 0.90163 0.88113 0.81722 0.73794 0.90365 0.88612 0.89128 0.89518 0.77683 0.92173 0.93894 0.93736 0.85739 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.89 71.98 0.71 -1.48 16 2 C -0.08 -1.14 5.79 29.85 0.17 -0.97 16 3 C -0.09 -1.89 5.14 -19.84 -0.10 -1.99 16 4 C -0.11 -2.25 9.59 22.39 0.21 -2.04 16 5 C 0.15 4.11 6.30 38.11 0.24 4.35 16 6 N -0.67 -18.43 5.30 -317.12 -1.68 -20.11 16 7 C 0.71 27.30 8.33 179.05 1.49 28.80 16 8 O -0.62 -29.29 14.03 -4.00 -0.06 -29.34 16 9 N -0.63 -24.09 3.33 -829.80 -2.76 -26.85 16 10 C 0.10 2.98 6.15 86.73 0.53 3.51 16 11 C -0.11 -3.87 6.13 31.78 0.19 -3.67 16 12 C 0.23 10.80 0.87 -10.16 -0.01 10.79 16 13 O -0.59 -29.49 13.15 -148.98 -1.96 -31.45 16 14 C -0.56 -28.09 8.26 25.60 0.21 -27.88 16 15 H 0.07 3.42 7.78 -2.91 -0.02 3.40 16 16 C 0.03 1.33 5.30 84.65 0.45 1.78 16 17 N -0.92 -49.56 10.72 21.45 0.23 -49.33 16 18 Si 0.96 41.21 29.54 68.60 2.03 43.23 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 C 0.13 5.97 5.50 86.85 0.48 6.45 16 23 C -0.12 -3.58 8.69 22.39 0.19 -3.38 16 24 C -0.13 -3.50 10.02 22.30 0.22 -3.28 16 25 C 0.07 1.56 7.24 22.38 0.16 1.73 16 26 F -0.14 -3.39 16.65 44.97 0.75 -2.64 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.10 7.94 -2.39 -0.02 1.08 16 31 H 0.10 0.99 8.00 -2.39 -0.02 0.97 16 32 H 0.17 2.26 8.03 -2.91 -0.02 2.24 16 33 H 0.42 8.34 7.82 -92.71 -0.72 7.62 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.94 8.03 -2.39 -0.02 2.92 16 37 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.37 19.99 7.32 -74.05 -0.54 19.45 16 39 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.04 2.38 7.47 -2.39 -0.02 2.36 16 41 H 0.04 2.20 8.03 -2.39 -0.02 2.18 16 42 H 0.12 4.44 6.22 -2.91 -0.02 4.42 16 43 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -65.45 359.10 1.50 -63.95 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.21 Total: 39.81 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.17 Total: 12.72 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.21 Total: -96.28 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -2.02 Total: -60.79 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.75 Total: -2.64 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -65.45 1.50 -63.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434726628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.571 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds