Wall clock time and date at job start Tue Mar 31 2020 12:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47376 * 2 1 4 4 C 1.38141 * 119.97872 * 99.72652 * 3 2 1 5 5 C 1.38820 * 119.95656 * 179.79152 * 4 3 2 6 6 N 1.40056 * 120.04823 * 180.22928 * 5 4 3 7 7 C 1.34776 * 120.00387 * 213.53914 * 6 5 4 8 8 O 1.21595 * 119.99793 * 5.31411 * 7 6 5 9 9 N 1.34776 * 119.99916 * 185.32168 * 7 6 5 10 10 C 1.47018 * 125.65250 * 359.68780 * 9 7 6 11 11 C 1.54337 * 107.26840 * 178.85509 * 10 9 7 12 12 C 1.55153 * 103.01815 * 338.14082 * 11 10 9 13 13 O 1.42899 * 111.00079 * 277.23484 * 12 11 10 14 14 C 1.50693 * 111.03773 * 153.39711 * 12 11 10 15 15 H 1.08002 * 119.99908 * 6.33132 * 14 12 11 16 16 C 1.37878 * 120.00303 * 186.32890 * 14 12 11 17 17 N 1.31516 * 119.99971 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00126 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47254 * 59.99900 * 18 16 14 20 20 H 1.48501 * 109.47032 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99910 * 18 16 14 22 22 C 1.47426 * 125.64508 * 179.97438 * 9 7 6 23 23 C 1.38867 * 119.91067 * 0.50660 * 5 4 3 24 24 C 1.38099 * 119.95404 * 359.72705 * 23 5 4 25 25 C 1.38451 * 119.97930 * 280.00024 * 3 2 1 26 26 F 1.35099 * 119.95467 * 359.97438 * 25 3 2 27 27 H 1.09003 * 109.46736 * 299.99791 * 1 2 3 28 28 H 1.08999 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47589 * 59.99773 * 1 2 3 30 30 H 1.08996 * 109.47589 * 120.00227 * 2 1 3 31 31 H 1.09004 * 109.47260 * 240.00231 * 2 1 3 32 32 H 1.07996 * 120.02077 * 0.02562 * 4 3 2 33 33 H 0.97010 * 119.99701 * 33.54003 * 6 5 4 34 34 H 1.09003 * 109.88171 * 298.39610 * 10 9 7 35 35 H 1.08997 * 109.88100 * 59.55683 * 10 9 7 36 36 H 1.09001 * 110.84703 * 219.67311 * 11 10 9 37 37 H 1.08999 * 110.51262 * 96.45292 * 11 10 9 38 38 H 0.96703 * 113.99766 * 173.65299 * 13 12 11 39 39 H 0.96993 * 120.00030 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.37036 * 322.92846 * 22 9 7 41 41 H 1.08999 * 110.36495 * 85.14267 * 22 9 7 42 42 H 1.07995 * 120.02648 * 179.74826 * 23 5 4 43 43 H 1.07997 * 119.97578 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4530 2.0041 1.1794 5 6 2.9198 3.3115 1.1781 6 7 3.3513 3.9033 2.3719 7 6 3.1652 5.2224 2.5760 8 8 2.5377 5.8800 1.7683 9 7 3.6746 5.8127 3.6754 10 6 4.4441 5.1387 4.7313 11 6 4.8410 6.2130 5.7657 12 6 4.7498 7.5315 4.9529 13 8 5.9421 7.7502 4.1962 14 6 4.4630 8.7042 5.8547 15 1 4.4520 8.5713 6.9265 16 6 4.2147 9.9470 5.3117 17 7 4.2286 10.1090 4.0066 18 14 3.8599 11.4008 6.4296 19 1 5.0191 11.6277 7.3295 20 1 3.6289 12.6143 5.6053 21 1 2.6503 11.1164 7.2427 22 6 3.5472 7.2401 4.0212 23 6 2.9529 4.0338 -0.0075 24 6 2.5269 3.4486 -1.1835 25 6 2.0666 2.1424 -1.1811 26 9 1.6500 1.5718 -2.3326 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.4224 1.4422 2.1011 33 1 3.7843 3.3636 3.0520 34 1 3.8304 4.3730 5.2060 35 1 5.3404 4.6871 4.3059 36 1 5.8576 6.0502 6.1236 37 1 4.1354 6.2225 6.5965 38 1 5.8950 8.5090 3.5986 39 1 4.0542 10.9834 3.6246 40 1 3.6055 7.8548 3.1230 41 1 2.6080 7.4215 4.5438 42 1 3.3119 5.0524 -0.0099 43 1 2.5529 4.0099 -2.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434726633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:55 Heat of formation + Delta-G solvation = -100.010548 kcal Electronic energy + Delta-G solvation = -27107.650229 eV Core-core repulsion = 23067.051458 eV Total energy + Delta-G solvation = -4040.598770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.85659 -40.48125 -38.93327 -37.42059 -34.91480 -34.40222 -33.63023 -32.27870 -30.48043 -29.93725 -28.61896 -27.75468 -25.17119 -24.27346 -23.07696 -22.58900 -21.27268 -19.74607 -19.48922 -18.06775 -17.50111 -17.13284 -16.86906 -16.40836 -15.66513 -15.28727 -15.18403 -14.71465 -14.54353 -14.34799 -14.12581 -13.90711 -13.61304 -13.33594 -13.15363 -12.91149 -12.85464 -12.73553 -12.21655 -12.14099 -11.96115 -11.71454 -11.52487 -11.23784 -11.06209 -10.97710 -10.90410 -10.69787 -10.53687 -10.27864 -10.07444 -9.73679 -9.43403 -8.96290 -8.74263 -8.45732 -8.08744 -7.73757 -6.32105 -4.42180 1.11731 1.18571 2.83189 3.19771 3.25919 3.27324 3.31929 3.75146 4.16947 4.25955 4.26830 4.47964 4.67056 4.90967 4.94728 5.11447 5.19308 5.27311 5.29598 5.31356 5.48451 5.53139 5.64805 5.67188 5.76109 5.82920 5.91088 5.97741 6.00618 6.16638 6.26828 6.29237 6.41745 6.52457 6.62161 6.78955 6.81903 7.00853 7.11658 7.23348 7.44526 7.69508 7.96992 8.27673 8.61315 8.86063 9.24513 9.33099 10.74959 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.002651 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.407153 B =10559.051782 C =10948.976761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.127 4.127 5 C 0.176 3.824 6 N -0.690 5.690 7 C 0.714 3.286 8 O -0.578 6.578 9 N -0.621 5.621 10 C 0.100 3.900 11 C -0.115 4.115 12 C 0.249 3.751 13 O -0.582 6.582 14 C -0.539 4.539 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.892 5.892 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.112 3.888 23 C -0.098 4.098 24 C -0.128 4.128 25 C 0.070 3.930 26 F -0.143 7.143 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.405 0.595 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.382 0.618 39 H 0.271 0.729 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.148 0.852 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -17.552 -4.949 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.149 4.149 5 C 0.080 3.920 6 N -0.337 5.337 7 C 0.416 3.584 8 O -0.455 6.455 9 N -0.357 5.357 10 C -0.023 4.023 11 C -0.153 4.153 12 C 0.209 3.791 13 O -0.391 6.391 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.530 5.530 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.010 4.010 23 C -0.118 4.118 24 C -0.147 4.147 25 C 0.050 3.950 26 F -0.122 7.122 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.241 0.759 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.166 0.834 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.041 -17.412 -5.374 18.475 hybrid contribution -0.301 1.015 0.426 1.141 sum -3.341 -16.398 -4.948 17.451 Atomic orbital electron populations 1.21742 0.94495 1.01798 1.02491 1.20443 0.96466 0.91718 1.03138 1.19596 1.01541 0.97015 0.91684 1.20565 1.01735 0.94735 0.97817 1.17533 0.96736 0.92215 0.85562 1.42775 1.63393 1.08809 1.18756 1.15506 0.80132 0.80754 0.82002 1.90918 1.45711 1.62936 1.45935 1.48010 1.54785 1.12352 1.20556 1.22023 0.94550 0.96178 0.89537 1.22595 1.01544 0.94472 0.96717 1.19617 0.81330 0.90963 0.87232 1.86107 1.39034 1.54015 1.59944 1.21397 1.49791 0.93075 0.93497 0.91529 1.25082 0.93558 0.99218 0.95343 1.69698 1.48409 1.24821 1.10078 0.86450 0.78947 0.81098 0.80352 1.19988 1.21065 1.20010 1.23244 1.00582 0.76018 1.01119 1.21150 0.99596 1.01386 0.89707 1.21018 1.00776 0.93344 0.99578 1.17436 1.03501 0.92430 0.81639 1.91446 1.88243 1.84897 1.47596 0.92364 0.92257 0.92419 0.90604 0.90721 0.84985 0.75922 0.92874 0.92322 0.90593 0.90307 0.76850 0.91870 0.89399 0.92183 0.83435 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.15 0.37 -0.88 16 2 C -0.08 -0.70 5.78 -27.89 -0.16 -0.86 16 3 C -0.10 -1.09 5.14 -104.58 -0.54 -1.63 16 4 C -0.13 -1.46 9.58 -39.40 -0.38 -1.83 16 5 C 0.18 2.48 6.28 -83.65 -0.53 1.96 16 6 N -0.69 -10.09 5.30 -14.21 -0.08 -10.16 16 7 C 0.71 13.73 8.23 -86.92 -0.72 13.01 16 8 O -0.58 -13.12 14.28 5.28 0.08 -13.04 16 9 N -0.62 -12.11 3.33 -176.24 -0.59 -12.70 16 10 C 0.10 1.61 6.16 -3.06 -0.02 1.59 16 11 C -0.12 -2.14 6.13 -24.89 -0.15 -2.29 16 12 C 0.25 5.76 0.87 -89.64 -0.08 5.68 16 13 O -0.58 -14.26 13.16 -35.23 -0.46 -14.72 16 14 C -0.54 -13.55 8.27 -34.44 -0.28 -13.84 16 15 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 16 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 17 N -0.89 -23.24 10.69 55.43 0.59 -22.64 16 18 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.11 2.58 5.38 -2.54 -0.01 2.57 16 23 C -0.10 -1.47 8.65 -39.40 -0.34 -1.81 16 24 C -0.13 -1.68 10.02 -39.54 -0.40 -2.07 16 25 C 0.07 0.88 7.24 -39.41 -0.29 0.60 16 26 F -0.14 -1.79 16.65 2.25 0.04 -1.75 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 31 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 32 H 0.13 1.18 8.04 -52.49 -0.42 0.75 16 33 H 0.41 4.67 7.82 -40.82 -0.32 4.35 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 38 H 0.38 9.65 7.56 45.56 0.34 9.99 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 41 H 0.06 1.44 8.03 -51.93 -0.42 1.03 16 42 H 0.15 2.53 6.41 -52.49 -0.34 2.20 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -28.80 359.36 -8.92 -37.72 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -5.28 Total: 15.07 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.61 Total: 1.92 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.07 Total: -45.50 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.39 Total: -27.77 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.80 -8.92 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434726633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.289 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds