Wall clock time and date at job start Tue Mar 31 2020 12:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47376 * 2 1 4 4 C 1.38141 * 119.97872 * 99.72652 * 3 2 1 5 5 C 1.38820 * 119.95656 * 179.79152 * 4 3 2 6 6 N 1.40056 * 120.04823 * 180.22928 * 5 4 3 7 7 C 1.34776 * 120.00387 * 213.53914 * 6 5 4 8 8 O 1.21595 * 119.99793 * 5.31411 * 7 6 5 9 9 N 1.34776 * 119.99916 * 185.32168 * 7 6 5 10 10 C 1.47018 * 125.65250 * 359.68780 * 9 7 6 11 11 C 1.54337 * 107.26840 * 178.85509 * 10 9 7 12 12 C 1.55153 * 103.01815 * 338.14082 * 11 10 9 13 13 O 1.42899 * 111.00079 * 277.23484 * 12 11 10 14 14 C 1.50693 * 111.03773 * 153.39711 * 12 11 10 15 15 H 1.08002 * 119.99908 * 6.33132 * 14 12 11 16 16 C 1.37878 * 120.00303 * 186.32890 * 14 12 11 17 17 N 1.31516 * 119.99971 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00126 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47254 * 59.99900 * 18 16 14 20 20 H 1.48501 * 109.47032 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99910 * 18 16 14 22 22 C 1.47426 * 125.64508 * 179.97438 * 9 7 6 23 23 C 1.38867 * 119.91067 * 0.50660 * 5 4 3 24 24 C 1.38099 * 119.95404 * 359.72705 * 23 5 4 25 25 C 1.38451 * 119.97930 * 280.00024 * 3 2 1 26 26 F 1.35099 * 119.95467 * 359.97438 * 25 3 2 27 27 H 1.09003 * 109.46736 * 299.99791 * 1 2 3 28 28 H 1.08999 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47589 * 59.99773 * 1 2 3 30 30 H 1.08996 * 109.47589 * 120.00227 * 2 1 3 31 31 H 1.09004 * 109.47260 * 240.00231 * 2 1 3 32 32 H 1.07996 * 120.02077 * 0.02562 * 4 3 2 33 33 H 0.97010 * 119.99701 * 33.54003 * 6 5 4 34 34 H 1.09003 * 109.88171 * 298.39610 * 10 9 7 35 35 H 1.08997 * 109.88100 * 59.55683 * 10 9 7 36 36 H 1.09001 * 110.84703 * 219.67311 * 11 10 9 37 37 H 1.08999 * 110.51262 * 96.45292 * 11 10 9 38 38 H 0.96703 * 113.99766 * 173.65299 * 13 12 11 39 39 H 0.96993 * 120.00030 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.37036 * 322.92846 * 22 9 7 41 41 H 1.08999 * 110.36495 * 85.14267 * 22 9 7 42 42 H 1.07995 * 120.02648 * 179.74826 * 23 5 4 43 43 H 1.07997 * 119.97578 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4530 2.0041 1.1794 5 6 2.9198 3.3115 1.1781 6 7 3.3513 3.9033 2.3719 7 6 3.1652 5.2224 2.5760 8 8 2.5377 5.8800 1.7683 9 7 3.6746 5.8127 3.6754 10 6 4.4441 5.1387 4.7313 11 6 4.8410 6.2130 5.7657 12 6 4.7498 7.5315 4.9529 13 8 5.9421 7.7502 4.1962 14 6 4.4630 8.7042 5.8547 15 1 4.4520 8.5713 6.9265 16 6 4.2147 9.9470 5.3117 17 7 4.2286 10.1090 4.0066 18 14 3.8599 11.4008 6.4296 19 1 5.0191 11.6277 7.3295 20 1 3.6289 12.6143 5.6053 21 1 2.6503 11.1164 7.2427 22 6 3.5472 7.2401 4.0212 23 6 2.9529 4.0338 -0.0075 24 6 2.5269 3.4486 -1.1835 25 6 2.0666 2.1424 -1.1811 26 9 1.6500 1.5718 -2.3326 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.4224 1.4422 2.1011 33 1 3.7843 3.3636 3.0520 34 1 3.8304 4.3730 5.2060 35 1 5.3404 4.6871 4.3059 36 1 5.8576 6.0502 6.1236 37 1 4.1354 6.2225 6.5965 38 1 5.8950 8.5090 3.5986 39 1 4.0542 10.9834 3.6246 40 1 3.6055 7.8548 3.1230 41 1 2.6080 7.4215 4.5438 42 1 3.3119 5.0524 -0.0099 43 1 2.5529 4.0099 -2.1058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434726633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:54 Heat of formation + Delta-G solvation = -118.259684 kcal Electronic energy + Delta-G solvation = -27108.441571 eV Core-core repulsion = 23067.051458 eV Total energy + Delta-G solvation = -4041.390112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.85766 -41.81901 -40.19967 -38.95055 -36.13065 -36.05200 -34.65490 -34.22875 -31.97259 -30.93110 -29.82642 -29.32955 -26.96005 -25.16706 -24.48594 -23.62863 -22.36875 -21.48845 -20.76790 -19.49651 -18.95085 -18.52397 -18.10468 -17.51589 -17.03927 -16.78304 -16.58135 -16.23249 -16.17963 -15.41604 -15.22649 -14.85494 -14.78859 -14.64860 -14.61166 -14.36605 -13.93594 -13.85501 -13.63457 -13.51092 -13.35307 -13.00187 -12.81267 -12.73824 -12.53454 -12.33465 -12.27350 -12.08779 -11.96710 -11.80126 -11.44710 -11.20450 -11.09767 -10.65831 -10.32633 -9.93947 -9.57752 -8.96433 -8.24415 -6.41450 0.06191 0.19676 1.41972 1.44526 1.49284 1.53015 1.95918 2.38395 2.61422 2.90137 3.02016 3.29157 3.62904 3.75704 3.78629 4.04547 4.12080 4.17477 4.21559 4.29601 4.36260 4.46380 4.50673 4.61957 4.65503 4.75348 4.94656 4.96815 5.05276 5.07215 5.09462 5.13375 5.19766 5.29303 5.31541 5.36472 5.38945 5.46601 5.46882 5.76104 5.93278 6.01072 6.10952 6.65466 6.89879 7.27466 7.35347 7.40610 8.80372 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.002651 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.407153 B =10559.051782 C =10948.976761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.091 4.091 4 C -0.110 4.110 5 C 0.156 3.844 6 N -0.668 5.668 7 C 0.710 3.290 8 O -0.622 6.622 9 N -0.626 5.626 10 C 0.102 3.898 11 C -0.110 4.110 12 C 0.232 3.768 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.962 3.038 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.128 3.872 23 C -0.121 4.121 24 C -0.133 4.133 25 C 0.065 3.935 26 F -0.143 7.143 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.423 0.577 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.373 0.627 39 H 0.268 0.732 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -20.706 -3.427 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.131 4.131 5 C 0.061 3.939 6 N -0.317 5.317 7 C 0.413 3.587 8 O -0.503 6.503 9 N -0.362 5.362 10 C -0.020 4.020 11 C -0.148 4.148 12 C 0.191 3.809 13 O -0.395 6.395 14 C -0.594 4.594 15 H 0.088 0.912 16 C -0.175 4.175 17 N -0.554 5.554 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.194 1.194 22 C 0.004 3.996 23 C -0.142 4.142 24 C -0.153 4.153 25 C 0.045 3.955 26 F -0.121 7.121 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.262 0.738 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.134 0.866 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.206 -20.642 -3.829 21.238 hybrid contribution -0.264 1.933 -0.124 1.955 sum -3.469 -18.710 -3.953 19.435 Atomic orbital electron populations 1.21747 0.94248 1.02872 1.01656 1.20556 0.96532 0.89872 1.04699 1.19975 1.00146 0.98258 0.90878 1.20850 0.99676 0.93320 0.99237 1.17735 0.98108 0.93339 0.84755 1.42410 1.62926 1.07030 1.19383 1.15663 0.79748 0.82010 0.81324 1.90892 1.47609 1.64442 1.47329 1.47901 1.55414 1.11179 1.21664 1.22238 0.95729 0.95915 0.88127 1.22600 1.02746 0.92364 0.97093 1.19866 0.80722 0.92898 0.87379 1.86098 1.39933 1.53513 1.59909 1.21767 1.49509 0.94071 0.94010 0.91182 1.25823 0.93568 1.01686 0.96428 1.69831 1.49196 1.24972 1.11418 0.85537 0.78911 0.78094 0.78671 1.19459 1.21358 1.19445 1.22727 0.99895 0.77963 0.99001 1.20984 1.01403 1.00463 0.91309 1.21074 1.00772 0.94018 0.99389 1.17583 1.03375 0.92280 0.82299 1.91448 1.88206 1.84762 1.47723 0.92559 0.90290 0.93926 0.88004 0.90270 0.81417 0.73758 0.88478 0.90491 0.89507 0.89122 0.77897 0.92225 0.93589 0.93987 0.86588 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.08 -1.09 5.78 29.84 0.17 -0.92 16 3 C -0.09 -1.81 5.14 -19.84 -0.10 -1.91 16 4 C -0.11 -2.18 9.58 22.39 0.21 -1.96 16 5 C 0.16 4.23 6.28 38.12 0.24 4.47 16 6 N -0.67 -18.50 5.30 -317.12 -1.68 -20.18 16 7 C 0.71 27.45 8.23 179.05 1.47 28.93 16 8 O -0.62 -29.60 14.28 -4.01 -0.06 -29.66 16 9 N -0.63 -24.21 3.33 -829.77 -2.76 -26.97 16 10 C 0.10 2.97 6.16 86.73 0.53 3.51 16 11 C -0.11 -3.87 6.13 31.79 0.19 -3.67 16 12 C 0.23 10.79 0.87 -10.16 -0.01 10.78 16 13 O -0.59 -29.30 13.16 -148.98 -1.96 -31.26 16 14 C -0.56 -28.10 8.27 25.60 0.21 -27.89 16 15 H 0.07 3.41 7.79 -2.91 -0.02 3.38 16 16 C 0.03 1.34 5.29 84.65 0.45 1.79 16 17 N -0.92 -49.51 10.69 21.45 0.23 -49.28 16 18 Si 0.96 41.22 29.54 68.60 2.03 43.25 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 C 0.13 6.09 5.38 86.85 0.47 6.55 16 23 C -0.12 -3.75 8.65 22.39 0.19 -3.56 16 24 C -0.13 -3.54 10.02 22.30 0.22 -3.32 16 25 C 0.06 1.55 7.24 22.38 0.16 1.71 16 26 F -0.14 -3.40 16.65 44.97 0.75 -2.65 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.92 8.00 -2.39 -0.02 0.90 16 31 H 0.08 1.06 7.94 -2.38 -0.02 1.04 16 32 H 0.17 2.10 8.04 -2.91 -0.02 2.08 16 33 H 0.42 8.34 7.82 -92.70 -0.72 7.61 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.09 2.94 8.03 -2.39 -0.02 2.92 16 38 H 0.37 19.71 7.56 -74.06 -0.56 19.15 16 39 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.05 2.55 7.33 -2.39 -0.02 2.54 16 41 H 0.04 2.10 8.03 -2.39 -0.02 2.08 16 42 H 0.12 4.33 6.41 -2.91 -0.02 4.31 16 43 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -65.93 359.36 1.45 -64.48 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -0.23 Total: 39.09 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.14 Total: 13.18 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.21 Total: -96.44 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.02 Total: -60.92 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.75 Total: -2.65 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -65.93 1.45 -64.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434726633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.781 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds