Wall clock time and date at job start Tue Mar 31 2020 13:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47064 * 2 1 4 4 C 1.33823 * 124.52111 * 89.99779 * 3 2 1 5 5 C 1.37481 * 115.09871 * 179.70388 * 4 3 2 6 6 C 1.36647 * 113.29483 * 0.49834 * 5 4 3 7 7 C 1.46583 * 125.45443 * 179.79741 * 6 5 4 8 8 O 1.21705 * 120.00341 * 27.89720 * 7 6 5 9 9 N 1.34783 * 119.99857 * 207.89281 * 7 6 5 10 10 C 1.46922 * 120.62740 * 6.68291 * 9 7 6 11 11 C 1.53190 * 108.77300 * 126.39440 * 10 9 7 12 12 C 1.53044 * 109.31657 * 54.63142 * 11 10 9 13 13 C 1.53038 * 109.53532 * 298.63554 * 12 11 10 14 14 C 1.46919 * 120.63021 * 186.68583 * 9 7 6 15 15 H 1.08998 * 109.70708 * 113.74735 * 14 9 7 16 16 C 1.53002 * 109.58788 * 353.39508 * 14 9 7 17 17 N 1.46499 * 109.47134 * 71.83836 * 16 14 9 18 18 C 1.36939 * 120.00018 * 187.77637 * 17 16 14 19 19 H 1.07999 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99948 * 180.27570 * 18 17 16 21 21 N 1.31617 * 120.00064 * 179.72518 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 359.73020 * 20 18 17 23 23 H 1.48502 * 109.47267 * 89.99857 * 22 20 18 24 24 H 1.48505 * 109.47170 * 209.99783 * 22 20 18 25 25 H 1.48499 * 109.47262 * 329.99525 * 22 20 18 26 26 S 1.70616 * 124.52385 * 269.97380 * 3 2 1 27 27 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47062 * 299.99720 * 1 2 3 29 29 H 1.08993 * 109.47194 * 59.99894 * 1 2 3 30 30 H 1.09004 * 109.47138 * 239.99855 * 2 1 3 31 31 H 1.09001 * 109.47343 * 119.99817 * 2 1 3 32 32 H 1.07995 * 122.45298 * 0.02562 * 4 3 2 33 33 H 1.07995 * 123.35058 * 180.29095 * 5 4 3 34 34 H 1.09000 * 109.59198 * 6.60454 * 10 9 7 35 35 H 1.08998 * 109.58499 * 246.17421 * 10 9 7 36 36 H 1.09007 * 109.49867 * 294.68001 * 11 10 9 37 37 H 1.09005 * 109.50210 * 174.58604 * 11 10 9 38 38 H 1.08997 * 109.46192 * 178.61308 * 12 11 10 39 39 H 1.09001 * 109.44793 * 58.64958 * 12 11 10 40 40 H 1.08991 * 109.50336 * 301.41353 * 13 12 11 41 41 H 1.09003 * 109.52084 * 181.32400 * 13 12 11 42 42 H 1.08997 * 109.47216 * 311.84269 * 16 14 9 43 43 H 1.09000 * 109.47511 * 191.83999 * 16 14 9 44 44 H 0.96999 * 119.99989 * 7.78677 * 17 16 14 45 45 H 0.97001 * 120.00367 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7432 3.4123 0.8775 6 6 2.8472 3.7231 -0.4491 7 6 3.3020 5.0081 -0.9882 8 8 4.0742 5.6976 -0.3482 9 7 2.8651 5.4261 -2.1928 10 6 1.8238 4.6794 -2.9117 11 6 0.6892 5.6420 -3.2757 12 6 1.2622 6.8289 -4.0538 13 6 2.2684 7.5778 -3.1769 14 6 3.4210 6.6370 -2.8119 15 1 3.9732 6.3689 -3.7126 16 6 4.3586 7.3339 -1.8239 17 7 5.5876 6.5495 -1.6806 18 6 6.5107 6.8910 -0.7286 19 1 6.3327 7.7385 -0.0832 20 6 7.6778 6.1512 -0.5966 21 7 8.5676 6.4828 0.3148 22 14 7.9856 4.6851 -1.7126 23 1 8.7025 5.1340 -2.9332 24 1 8.8113 3.6811 -0.9945 25 1 6.6876 4.0747 -2.0971 26 16 2.3552 2.3322 -1.4057 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1446 1.7374 2.0965 33 1 2.9927 4.1020 1.6703 34 1 1.4379 3.8842 -2.2738 35 1 2.2442 4.2497 -3.8210 36 1 0.2104 6.0013 -2.3647 37 1 -0.0447 5.1230 -3.8924 38 1 0.4534 7.5031 -4.3353 39 1 1.7622 6.4666 -4.9520 40 1 1.7750 7.9187 -2.2668 41 1 2.6588 8.4366 -3.7228 42 1 3.8670 7.4192 -0.8548 43 1 4.6039 8.3288 -2.1957 44 1 5.7474 5.7882 -2.2601 45 1 9.3830 5.9656 0.4073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491254074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:32 Heat of formation + Delta-G solvation = 45.244829 kcal Electronic energy + Delta-G solvation = -26195.741060 eV Core-core repulsion = 22727.654212 eV Total energy + Delta-G solvation = -3468.086849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.22552 -38.11212 -36.82603 -34.78853 -33.70665 -32.70353 -31.98050 -30.22077 -28.68560 -26.49156 -25.15999 -24.37325 -22.76655 -22.33150 -21.77320 -20.74124 -19.98234 -18.29528 -17.81242 -16.98083 -16.05154 -15.60684 -15.26408 -15.05881 -14.62663 -14.37996 -14.30336 -13.95668 -13.79145 -13.71321 -13.39949 -12.92162 -12.77717 -12.66137 -12.51025 -12.32374 -12.09160 -12.01844 -11.82369 -11.63618 -11.30256 -11.26140 -11.08309 -10.94057 -10.84198 -10.72841 -10.44797 -10.26040 -9.98527 -9.35916 -8.78112 -8.64370 -8.38640 -8.29524 -8.18067 -6.82818 -5.51543 -2.79169 0.71527 1.53896 1.97334 2.60775 3.23211 3.50260 3.53383 3.56910 3.67184 4.54921 4.65578 4.75058 4.80691 4.81063 4.82976 4.98549 5.03139 5.07570 5.26752 5.29868 5.40128 5.48886 5.52192 5.53880 5.60042 5.67014 5.73796 5.77278 5.80251 5.83566 5.90683 5.91866 6.01018 6.03074 6.12539 6.14019 6.29934 6.35269 6.50432 6.58481 6.85628 7.20028 7.77898 8.23930 8.65586 8.76856 9.46157 10.19239 10.39454 11.68652 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.005746 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.862314 B = 4872.110213 C = 6693.808351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.221 4.221 4 C -0.145 4.145 5 C -0.068 4.068 6 C -0.241 4.241 7 C 0.551 3.449 8 O -0.429 6.429 9 N -0.614 5.614 10 C 0.096 3.904 11 C -0.130 4.130 12 C -0.118 4.118 13 C -0.127 4.127 14 C 0.141 3.859 15 H 0.067 0.933 16 C 0.159 3.841 17 N -0.730 5.730 18 C -0.198 4.198 19 H 0.087 0.913 20 C -0.005 4.005 21 N -0.945 5.945 22 Si 0.879 3.121 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.283 1.283 26 S 0.192 5.808 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.017 0.983 44 H 0.354 0.646 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 -10.069 -7.053 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 C -0.339 4.339 4 C -0.176 4.176 5 C -0.100 4.100 6 C -0.361 4.361 7 C 0.336 3.664 8 O -0.299 6.299 9 N -0.352 5.352 10 C -0.029 4.029 11 C -0.168 4.168 12 C -0.156 4.156 13 C -0.166 4.166 14 C 0.038 3.962 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.374 5.374 18 C -0.329 4.329 19 H 0.104 0.896 20 C -0.199 4.199 21 N -0.595 5.595 22 Si 0.711 3.289 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.209 1.209 26 S 0.460 5.540 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.186 0.814 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.865 -9.865 -8.013 25.290 hybrid contribution 0.449 -1.124 0.824 1.464 sum -21.416 -10.989 -7.189 25.121 Atomic orbital electron populations 1.21787 0.94355 1.01824 1.02478 1.20085 0.96096 0.89816 1.03175 1.24389 1.08573 1.01983 0.98977 1.19896 1.04228 0.94185 0.99266 1.20708 0.97463 0.96487 0.95324 1.24919 1.14067 0.99359 0.97775 1.17128 0.82354 0.84781 0.82187 1.91243 1.29331 1.52507 1.56774 1.47732 1.40401 1.27750 1.19268 1.22027 0.88970 0.94626 0.97289 1.21874 0.97294 0.96856 1.00791 1.21510 0.98690 0.97009 0.98348 1.21906 0.96271 0.98126 1.00289 1.21570 0.93837 0.84096 0.96737 0.91459 1.21008 0.86695 0.92372 0.96749 1.42627 1.19236 1.34177 1.41326 1.18960 0.94945 1.10204 1.08745 0.89551 1.24532 0.97414 0.98854 0.99061 1.69688 1.10805 1.42300 1.36754 0.86591 0.77127 0.84386 0.80773 1.21617 1.22137 1.20941 1.83030 1.60734 1.02419 1.07863 0.92160 0.92247 0.92490 0.90951 0.90169 0.84454 0.83163 0.89529 0.91622 0.91429 0.90998 0.91778 0.91869 0.91283 0.90610 0.91873 0.96505 0.81413 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.46 6.36 -27.88 -0.18 -0.64 16 3 C -0.22 -2.61 5.53 -35.86 -0.20 -2.81 16 4 C -0.14 -1.87 10.00 -41.41 -0.41 -2.29 16 5 C -0.07 -1.07 10.12 -40.43 -0.41 -1.48 16 6 C -0.24 -4.01 5.80 -36.79 -0.21 -4.23 16 7 C 0.55 10.65 7.31 -12.89 -0.09 10.55 16 8 O -0.43 -10.31 10.46 5.18 0.05 -10.26 16 9 N -0.61 -9.83 2.97 -166.79 -0.50 -10.33 16 10 C 0.10 1.13 5.50 -3.71 -0.02 1.11 16 11 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 12 C -0.12 -1.14 5.88 -26.69 -0.16 -1.30 16 13 C -0.13 -1.56 5.35 -26.61 -0.14 -1.70 16 14 C 0.14 2.28 2.92 -67.60 -0.20 2.08 16 15 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.16 3.34 4.89 -4.04 -0.02 3.32 16 17 N -0.73 -18.81 3.34 -59.91 -0.20 -19.01 16 18 C -0.20 -6.04 9.58 -15.06 -0.14 -6.18 16 19 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.94 -31.73 13.97 55.49 0.78 -30.95 16 22 Si 0.88 24.17 27.73 -169.99 -4.71 19.46 16 23 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.29 -8.20 7.11 56.52 0.40 -7.80 16 25 H -0.28 -7.52 6.52 56.52 0.37 -7.15 16 26 S 0.19 2.44 19.13 -107.50 -2.06 0.38 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 34 H 0.09 0.99 3.87 -24.64 -0.10 0.90 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.45 6.07 -51.95 -0.32 1.14 16 43 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 44 H 0.35 9.12 5.55 -40.82 -0.23 8.89 16 45 H 0.25 8.16 8.31 -40.82 -0.34 7.82 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -36.27 360.98 -10.27 -46.53 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.99 Total: 4.65 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.08 Total: -5.91 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.08 Total: -60.29 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.05 Total: -10.26 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.71 Total: 19.46 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.06 Total: 0.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.27 -10.27 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491254074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.779 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds