Wall clock time and date at job start Tue Mar 31 2020 13:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47064 * 2 1 4 4 C 1.33823 * 124.52111 * 89.99779 * 3 2 1 5 5 C 1.37481 * 115.09871 * 179.70388 * 4 3 2 6 6 C 1.36647 * 113.29483 * 0.49834 * 5 4 3 7 7 C 1.46583 * 125.45443 * 179.79741 * 6 5 4 8 8 O 1.21705 * 120.00341 * 27.89720 * 7 6 5 9 9 N 1.34783 * 119.99857 * 207.89281 * 7 6 5 10 10 C 1.46922 * 120.62740 * 6.68291 * 9 7 6 11 11 C 1.53190 * 108.77300 * 126.39440 * 10 9 7 12 12 C 1.53044 * 109.31657 * 54.63142 * 11 10 9 13 13 C 1.53038 * 109.53532 * 298.63554 * 12 11 10 14 14 C 1.46919 * 120.63021 * 186.68583 * 9 7 6 15 15 H 1.08998 * 109.70708 * 113.74735 * 14 9 7 16 16 C 1.53002 * 109.58788 * 353.39508 * 14 9 7 17 17 N 1.46499 * 109.47134 * 71.83836 * 16 14 9 18 18 C 1.36939 * 120.00018 * 187.77637 * 17 16 14 19 19 H 1.07999 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99948 * 180.27570 * 18 17 16 21 21 N 1.31617 * 120.00064 * 179.72518 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 359.73020 * 20 18 17 23 23 H 1.48502 * 109.47267 * 89.99857 * 22 20 18 24 24 H 1.48505 * 109.47170 * 209.99783 * 22 20 18 25 25 H 1.48499 * 109.47262 * 329.99525 * 22 20 18 26 26 S 1.70616 * 124.52385 * 269.97380 * 3 2 1 27 27 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47062 * 299.99720 * 1 2 3 29 29 H 1.08993 * 109.47194 * 59.99894 * 1 2 3 30 30 H 1.09004 * 109.47138 * 239.99855 * 2 1 3 31 31 H 1.09001 * 109.47343 * 119.99817 * 2 1 3 32 32 H 1.07995 * 122.45298 * 0.02562 * 4 3 2 33 33 H 1.07995 * 123.35058 * 180.29095 * 5 4 3 34 34 H 1.09000 * 109.59198 * 6.60454 * 10 9 7 35 35 H 1.08998 * 109.58499 * 246.17421 * 10 9 7 36 36 H 1.09007 * 109.49867 * 294.68001 * 11 10 9 37 37 H 1.09005 * 109.50210 * 174.58604 * 11 10 9 38 38 H 1.08997 * 109.46192 * 178.61308 * 12 11 10 39 39 H 1.09001 * 109.44793 * 58.64958 * 12 11 10 40 40 H 1.08991 * 109.50336 * 301.41353 * 13 12 11 41 41 H 1.09003 * 109.52084 * 181.32400 * 13 12 11 42 42 H 1.08997 * 109.47216 * 311.84269 * 16 14 9 43 43 H 1.09000 * 109.47511 * 191.83999 * 16 14 9 44 44 H 0.96999 * 119.99989 * 7.78677 * 17 16 14 45 45 H 0.97001 * 120.00367 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7432 3.4123 0.8775 6 6 2.8472 3.7231 -0.4491 7 6 3.3020 5.0081 -0.9882 8 8 4.0742 5.6976 -0.3482 9 7 2.8651 5.4261 -2.1928 10 6 1.8238 4.6794 -2.9117 11 6 0.6892 5.6420 -3.2757 12 6 1.2622 6.8289 -4.0538 13 6 2.2684 7.5778 -3.1769 14 6 3.4210 6.6370 -2.8119 15 1 3.9732 6.3689 -3.7126 16 6 4.3586 7.3339 -1.8239 17 7 5.5876 6.5495 -1.6806 18 6 6.5107 6.8910 -0.7286 19 1 6.3327 7.7385 -0.0832 20 6 7.6778 6.1512 -0.5966 21 7 8.5676 6.4828 0.3148 22 14 7.9856 4.6851 -1.7126 23 1 8.7025 5.1340 -2.9332 24 1 8.8113 3.6811 -0.9945 25 1 6.6876 4.0747 -2.0971 26 16 2.3552 2.3322 -1.4057 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1446 1.7374 2.0965 33 1 2.9927 4.1020 1.6703 34 1 1.4379 3.8842 -2.2738 35 1 2.2442 4.2497 -3.8210 36 1 0.2104 6.0013 -2.3647 37 1 -0.0447 5.1230 -3.8924 38 1 0.4534 7.5031 -4.3353 39 1 1.7622 6.4666 -4.9520 40 1 1.7750 7.9187 -2.2668 41 1 2.6588 8.4366 -3.7228 42 1 3.8670 7.4192 -0.8548 43 1 4.6039 8.3288 -2.1957 44 1 5.7474 5.7882 -2.2601 45 1 9.3830 5.9656 0.4073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491254074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:32 Heat of formation + Delta-G solvation = 21.827324 kcal Electronic energy + Delta-G solvation = -26196.756519 eV Core-core repulsion = 22727.654212 eV Total energy + Delta-G solvation = -3469.102308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55697 -39.17539 -38.05295 -36.60578 -34.72728 -33.85372 -33.74174 -32.00511 -29.69586 -27.93454 -26.40503 -25.52955 -24.15832 -23.52898 -23.07735 -22.06738 -21.07922 -19.78514 -19.32222 -18.51712 -17.21106 -16.79119 -16.68500 -16.33918 -16.15827 -15.74508 -15.51798 -15.13279 -14.88913 -14.77032 -14.68199 -14.44348 -14.03889 -13.97034 -13.81563 -13.71642 -13.46747 -13.18952 -12.96725 -12.88491 -12.68829 -12.40792 -12.28565 -12.11316 -12.05856 -11.87451 -11.81250 -11.69359 -11.46536 -11.35540 -10.96971 -10.08671 -9.73496 -9.48257 -9.34131 -8.97252 -7.95064 -5.19937 -0.41918 0.44182 0.91144 1.26595 1.33293 1.38816 1.47704 1.99690 2.29713 2.50043 3.35808 3.52773 3.65012 3.73765 3.85305 3.98793 4.05331 4.14710 4.24485 4.27580 4.34101 4.35810 4.42121 4.50048 4.53562 4.64597 4.80030 4.85617 4.91418 4.93785 5.01627 5.04005 5.07746 5.12408 5.17153 5.22377 5.23345 5.28632 5.35972 5.44443 5.48996 5.74153 5.81675 6.27139 6.47445 7.15158 7.37298 7.92481 8.11725 9.29073 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.005746 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.862314 B = 4872.110213 C = 6693.808351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.204 4.204 4 C -0.161 4.161 5 C -0.075 4.075 6 C -0.292 4.292 7 C 0.548 3.452 8 O -0.501 6.501 9 N -0.610 5.610 10 C 0.087 3.913 11 C -0.125 4.125 12 C -0.112 4.112 13 C -0.121 4.121 14 C 0.144 3.856 15 H 0.076 0.924 16 C 0.159 3.841 17 N -0.729 5.729 18 C -0.181 4.181 19 H 0.043 0.957 20 C -0.077 4.077 21 N -0.996 5.996 22 Si 0.954 3.046 23 H -0.273 1.273 24 H -0.299 1.299 25 H -0.270 1.270 26 S 0.250 5.750 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.019 0.981 44 H 0.355 0.645 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.406 -13.180 -10.352 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.323 4.323 4 C -0.191 4.191 5 C -0.108 4.108 6 C -0.412 4.412 7 C 0.334 3.666 8 O -0.376 6.376 9 N -0.347 5.347 10 C -0.036 4.036 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.160 4.160 14 C 0.041 3.959 15 H 0.094 0.906 16 C 0.033 3.967 17 N -0.372 5.372 18 C -0.313 4.313 19 H 0.061 0.939 20 C -0.266 4.266 21 N -0.650 5.650 22 Si 0.783 3.217 23 H -0.199 1.199 24 H -0.226 1.226 25 H -0.196 1.196 26 S 0.519 5.481 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.188 0.812 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.024 -12.977 -11.393 30.404 hybrid contribution 1.217 -0.181 1.914 2.275 sum -23.808 -13.158 -9.479 28.806 Atomic orbital electron populations 1.21784 0.92915 1.03136 1.02392 1.20286 0.97203 0.87487 1.04462 1.24938 1.05878 1.03201 0.98328 1.19991 1.05074 0.93128 1.00866 1.20814 0.97516 0.97562 0.94927 1.24803 1.17000 1.00376 0.99005 1.17630 0.81256 0.85231 0.82435 1.91210 1.32844 1.54662 1.58902 1.47894 1.40594 1.27645 1.18521 1.22387 0.88670 0.95100 0.97439 1.21886 0.96823 0.96531 1.01050 1.21511 0.98481 0.97079 0.97870 1.21881 0.95430 0.97934 1.00706 1.21519 0.94537 0.84851 0.94991 0.90612 1.21037 0.85973 0.92580 0.97121 1.42515 1.19974 1.34599 1.40106 1.18853 0.95721 1.08413 1.08313 0.93853 1.25314 0.97421 1.02492 1.01388 1.69888 1.11569 1.44167 1.39394 0.85396 0.77275 0.80161 0.78863 1.19900 1.22591 1.19586 1.82636 1.59176 0.99595 1.06739 0.90210 0.92638 0.92342 0.89591 0.89009 0.82493 0.85316 0.89190 0.89708 0.92362 0.87518 0.89432 0.90604 0.92389 0.89399 0.94489 0.96343 0.81246 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.82 16 2 C -0.06 -0.75 6.36 29.85 0.19 -0.56 16 3 C -0.20 -4.28 5.53 24.68 0.14 -4.14 16 4 C -0.16 -3.99 10.00 21.09 0.21 -3.78 16 5 C -0.07 -2.44 10.12 21.72 0.22 -2.22 16 6 C -0.29 -9.80 5.80 24.08 0.14 -9.66 16 7 C 0.55 21.81 7.31 86.42 0.63 22.44 16 8 O -0.50 -25.75 10.46 -4.36 -0.05 -25.79 16 9 N -0.61 -19.11 2.97 -799.81 -2.38 -21.49 16 10 C 0.09 1.80 5.50 86.36 0.48 2.27 16 11 C -0.12 -1.90 6.08 30.67 0.19 -1.71 16 12 C -0.11 -1.71 5.88 30.62 0.18 -1.53 16 13 C -0.12 -2.74 5.35 30.67 0.16 -2.58 16 14 C 0.14 4.57 2.92 44.98 0.13 4.70 16 15 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 16 C 0.16 6.97 4.89 86.38 0.42 7.40 16 17 N -0.73 -38.88 3.34 -343.46 -1.15 -40.03 16 18 C -0.18 -11.68 9.58 84.03 0.80 -10.87 16 19 H 0.04 3.10 8.06 -2.91 -0.02 3.07 16 20 C -0.08 -5.06 5.50 84.86 0.47 -4.60 16 21 N -1.00 -70.13 13.97 21.65 0.30 -69.83 16 22 Si 0.95 51.41 27.73 68.60 1.90 53.31 16 23 H -0.27 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 25 H -0.27 -13.77 6.52 99.48 0.65 -13.12 16 26 S 0.25 5.71 19.13 -56.49 -1.08 4.63 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 33 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.09 1.80 3.87 -19.74 -0.08 1.72 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.04 1.85 6.07 -2.63 -0.02 1.83 16 43 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 44 H 0.36 18.44 5.55 -92.71 -0.51 17.93 16 45 H 0.25 16.88 8.31 -92.71 -0.77 16.11 16 Total: -1.00 -85.70 360.98 2.97 -82.73 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.34 Total: 22.13 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.07 Total: -5.66 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -3.22 Total: -131.35 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.90 Total: 53.31 kcal Atomic # 16 Polarization: 5.71 SS G_CDS: -1.08 Total: 4.63 kcal Total: -85.70 2.97 -82.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491254074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.555 kcal (2) G-P(sol) polarization free energy of solvation -85.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds