Wall clock time and date at job start Tue Mar 31 2020 13:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00294 * 2 1 3 5 5 C 1.52998 * 109.47417 * 174.99935 * 4 2 1 6 6 N 1.46495 * 109.47641 * 179.97438 * 5 4 2 7 7 C 1.46494 * 120.00139 * 270.80075 * 6 5 4 8 8 C 1.50698 * 109.47059 * 265.44570 * 7 6 5 9 9 H 1.08000 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00337 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00324 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99741 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46756 * 89.99903 * 12 10 8 14 14 H 1.48493 * 109.46972 * 209.99505 * 12 10 8 15 15 H 1.48502 * 109.47100 * 330.00076 * 12 10 8 16 16 C 1.34786 * 119.99962 * 90.79574 * 6 5 4 17 17 O 1.21622 * 119.99605 * 354.40609 * 16 6 5 18 18 C 1.47249 * 119.99892 * 174.68127 * 16 6 5 19 19 N 1.30560 * 125.54227 * 172.73023 * 18 16 6 20 20 C 1.30707 * 115.90840 * 179.77982 * 19 18 16 21 21 C 1.50693 * 122.11053 * 180.21674 * 20 19 18 22 22 C 1.53000 * 117.50114 * 163.93786 * 21 20 19 23 23 C 1.52999 * 117.49845 * 95.31244 * 21 20 19 24 24 C 1.34237 * 115.77996 * 0.51437 * 20 19 18 25 25 S 1.71076 * 109.09233 * 359.72538 * 24 20 19 26 26 H 1.08998 * 109.47255 * 299.99607 * 1 2 3 27 27 H 1.08997 * 109.47386 * 60.00086 * 1 2 3 28 28 H 1.09006 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46907 * 240.00080 * 2 1 3 30 30 H 1.09002 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46806 * 300.00241 * 3 2 1 32 32 H 1.08994 * 109.46876 * 59.99565 * 3 2 1 33 33 H 1.08998 * 109.47378 * 54.99711 * 4 2 1 34 34 H 1.09000 * 109.46830 * 294.99619 * 4 2 1 35 35 H 1.08998 * 109.47030 * 59.99562 * 5 4 2 36 36 H 1.09011 * 109.46996 * 300.00132 * 5 4 2 37 37 H 1.09005 * 109.47422 * 25.44280 * 7 6 5 38 38 H 1.08995 * 109.47585 * 145.44622 * 7 6 5 39 39 H 0.97000 * 120.00116 * 180.02562 * 11 10 8 40 40 H 1.08997 * 115.55019 * 309.64650 * 21 20 19 41 41 H 1.09002 * 117.49416 * 359.97438 * 22 21 20 42 42 H 1.08997 * 117.50020 * 145.02481 * 22 21 20 43 43 H 1.08997 * 117.50532 * 214.98163 * 23 21 20 44 44 H 1.09005 * 117.50074 * 359.97438 * 23 21 20 45 45 H 1.07998 * 125.45180 * 179.72588 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0532 -1.5212 2.3843 7 6 4.3850 -0.7548 3.5879 8 6 5.8592 -0.4420 3.5937 9 1 6.4863 -0.7806 2.7822 10 6 6.4075 0.2765 4.6350 11 7 7.6940 0.5490 4.6403 12 14 5.3227 0.8628 6.0382 13 1 5.2850 -0.1737 7.1010 14 1 5.8737 2.1239 6.5961 15 1 3.9473 1.1042 5.5331 16 6 4.1972 -2.8614 2.3777 17 8 3.8267 -3.5080 1.4166 18 6 4.7975 -3.5430 3.5367 19 7 4.8671 -4.8359 3.7045 20 6 5.4458 -5.2387 4.8051 21 6 5.6058 -6.6997 5.1376 22 6 6.6074 -7.0693 6.2335 23 6 6.9321 -7.3672 4.7683 24 6 5.8831 -4.2686 5.6234 25 16 5.5317 -2.7469 4.9253 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9994 0.1674 1.1420 36 1 3.8532 -1.3941 0.3001 37 1 3.8163 0.1751 3.5949 38 1 4.1345 -1.3406 4.4723 39 1 8.0797 1.0542 5.3730 40 1 4.7005 -7.3016 5.0590 41 1 7.1510 -6.2556 6.7137 42 1 6.3611 -7.9145 6.8762 43 1 6.8995 -8.4082 4.4471 44 1 7.6888 -6.7495 4.2844 45 1 6.3776 -4.4240 6.5709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520962501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:23 Heat of formation + Delta-G solvation = 24.048076 kcal Electronic energy + Delta-G solvation = -25376.830226 eV Core-core repulsion = 21907.824217 eV Total energy + Delta-G solvation = -3469.006009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71526 -38.96086 -36.70771 -36.10972 -35.06318 -32.90004 -30.38196 -29.05236 -27.92249 -27.07147 -25.80780 -23.97095 -23.03920 -22.24000 -21.87580 -19.83832 -19.11691 -18.50612 -17.49015 -17.35556 -16.19305 -15.76622 -15.34594 -15.14992 -14.76023 -14.73105 -14.17298 -13.96951 -13.65257 -13.22750 -13.05789 -13.01600 -12.78660 -12.53666 -12.41482 -12.15225 -11.97865 -11.72789 -11.42337 -11.37127 -11.03957 -10.98279 -10.83570 -10.54657 -10.52690 -10.47425 -10.34896 -10.26025 -9.99456 -9.83065 -9.55674 -9.24317 -8.87401 -8.67111 -7.95769 -7.88996 -6.56243 -4.52628 1.03869 2.13708 2.65544 2.92326 2.97919 3.05768 3.09427 3.43727 3.82744 3.97394 4.07476 4.64184 4.76753 4.98058 5.00340 5.05117 5.07347 5.14829 5.16213 5.51955 5.55383 5.65799 5.68098 5.74240 5.76778 5.81245 5.89012 5.91035 5.92114 6.00600 6.01364 6.06094 6.16086 6.22044 6.26695 6.29900 6.36170 6.38420 6.53363 6.58093 6.67076 6.99729 7.11569 7.79509 8.03868 8.35008 8.50636 8.75409 8.97302 10.53344 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010813 B = 0.005024 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.802288 B = 5571.673075 C = 7566.907846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.124 3.876 6 N -0.587 5.587 7 C 0.192 3.808 8 C -0.532 4.532 9 H 0.091 0.909 10 C 0.092 3.908 11 N -0.862 5.862 12 Si 0.847 3.153 13 H -0.261 1.261 14 H -0.274 1.274 15 H -0.256 1.256 16 C 0.599 3.401 17 O -0.534 6.534 18 C -0.046 4.046 19 N -0.412 5.412 20 C 0.067 3.933 21 C -0.075 4.075 22 C -0.175 4.175 23 C -0.169 4.169 24 C -0.359 4.359 25 S 0.352 5.648 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.274 0.726 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -2.559 0.885 7.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.170 4.170 5 C 0.002 3.998 6 N -0.318 5.318 7 C 0.068 3.932 8 C -0.577 4.577 9 H 0.109 0.891 10 C -0.117 4.117 11 N -0.496 5.496 12 Si 0.672 3.328 13 H -0.186 1.186 14 H -0.199 1.199 15 H -0.180 1.180 16 C 0.384 3.616 17 O -0.411 6.411 18 C -0.318 4.318 19 N -0.129 5.129 20 C -0.073 4.073 21 C -0.095 4.095 22 C -0.212 4.212 23 C -0.206 4.206 24 C -0.500 4.500 25 S 0.618 5.382 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.018 -2.124 0.396 7.343 hybrid contribution -0.020 -0.549 1.214 1.333 sum -7.038 -2.673 1.611 7.699 Atomic orbital electron populations 1.21821 0.95504 1.01558 1.01351 1.21045 0.95464 0.96322 0.98435 1.21919 1.01669 0.95817 1.01380 1.22035 0.96255 1.00911 0.97769 1.21465 0.93163 0.97747 0.87456 1.47647 1.63892 1.05112 1.15186 1.20132 0.97985 0.92602 0.82455 1.21469 0.91533 1.35155 1.09545 0.89101 1.24862 0.94938 0.94313 0.97605 1.69859 1.10983 1.36603 1.32155 0.87209 0.82040 0.80226 0.83360 1.18580 1.19865 1.17959 1.16717 0.78282 0.81835 0.84738 1.90732 1.50338 1.65281 1.34764 1.27075 1.09755 0.92520 1.02489 1.66257 1.14682 1.12753 1.19251 1.19010 1.02216 0.95027 0.91054 1.20295 0.94488 0.91222 1.03531 1.22992 1.03170 1.03225 0.91814 1.22944 0.98832 1.01158 0.97696 1.27908 1.10839 1.04651 1.06606 1.86573 1.43268 0.99375 1.08942 0.92860 0.92982 0.92814 0.91088 0.91998 0.93113 0.92691 0.91565 0.91829 0.89643 0.90405 0.92861 0.95200 0.91566 0.86936 0.88642 0.88545 0.88646 0.88794 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 2 C -0.09 -1.12 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.68 8.95 37.16 0.33 -1.35 16 4 C -0.13 -1.91 5.01 -26.73 -0.13 -2.05 16 5 C 0.12 2.11 5.11 -4.05 -0.02 2.09 16 6 N -0.59 -11.83 2.47 -176.40 -0.44 -12.27 16 7 C 0.19 3.94 3.79 -5.20 -0.02 3.92 16 8 C -0.53 -12.46 7.19 -34.44 -0.25 -12.71 16 9 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 10 C 0.09 2.19 4.94 -17.82 -0.09 2.10 16 11 N -0.86 -22.21 13.96 55.43 0.77 -21.43 16 12 Si 0.85 17.38 26.92 -169.99 -4.58 12.80 16 13 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.26 -4.94 6.54 56.52 0.37 -4.57 16 16 C 0.60 13.44 7.62 -12.59 -0.10 13.34 16 17 O -0.53 -12.96 16.70 5.26 0.09 -12.87 16 18 C -0.05 -1.02 7.19 -14.43 -0.10 -1.13 16 19 N -0.41 -9.10 10.57 -7.69 -0.08 -9.18 16 20 C 0.07 1.29 6.35 -84.48 -0.54 0.75 16 21 C -0.07 -1.16 6.28 -91.78 -0.58 -1.74 16 22 C -0.17 -2.16 9.89 -26.73 -0.26 -2.43 16 23 C -0.17 -2.28 10.23 -26.73 -0.27 -2.56 16 24 C -0.36 -6.60 10.23 29.32 0.30 -6.30 16 25 S 0.35 7.17 15.22 -107.50 -1.64 5.53 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.38 6.50 -51.93 -0.34 1.04 16 36 H 0.08 1.37 7.48 -51.92 -0.39 0.98 16 37 H 0.05 1.04 7.09 -51.93 -0.37 0.67 16 38 H 0.03 0.62 4.36 -26.10 -0.11 0.51 16 39 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.10 1.18 6.72 -51.93 -0.35 0.83 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.16 2.52 6.85 -52.49 -0.36 2.16 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -27.78 371.13 -8.85 -36.62 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.92 Total: 5.83 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.65 Total: -10.63 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.26 Total: -42.89 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -4.58 Total: 12.80 kcal Atomic # 16 Polarization: 7.17 SS G_CDS: -1.64 Total: 5.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.78 -8.85 -36.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520962501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.673 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds