Wall clock time and date at job start Tue Mar 31 2020 13:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00294 * 2 1 3 5 5 C 1.52998 * 109.47417 * 174.99935 * 4 2 1 6 6 N 1.46495 * 109.47641 * 179.97438 * 5 4 2 7 7 C 1.46494 * 120.00139 * 270.80075 * 6 5 4 8 8 C 1.50698 * 109.47059 * 265.44570 * 7 6 5 9 9 H 1.08000 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00337 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00324 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99741 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46756 * 89.99903 * 12 10 8 14 14 H 1.48493 * 109.46972 * 209.99505 * 12 10 8 15 15 H 1.48502 * 109.47100 * 330.00076 * 12 10 8 16 16 C 1.34786 * 119.99962 * 90.79574 * 6 5 4 17 17 O 1.21622 * 119.99605 * 354.40609 * 16 6 5 18 18 C 1.47249 * 119.99892 * 174.68127 * 16 6 5 19 19 N 1.30560 * 125.54227 * 172.73023 * 18 16 6 20 20 C 1.30707 * 115.90840 * 179.77982 * 19 18 16 21 21 C 1.50693 * 122.11053 * 180.21674 * 20 19 18 22 22 C 1.53000 * 117.50114 * 163.93786 * 21 20 19 23 23 C 1.52999 * 117.49845 * 95.31244 * 21 20 19 24 24 C 1.34237 * 115.77996 * 0.51437 * 20 19 18 25 25 S 1.71076 * 109.09233 * 359.72538 * 24 20 19 26 26 H 1.08998 * 109.47255 * 299.99607 * 1 2 3 27 27 H 1.08997 * 109.47386 * 60.00086 * 1 2 3 28 28 H 1.09006 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46907 * 240.00080 * 2 1 3 30 30 H 1.09002 * 109.47119 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46806 * 300.00241 * 3 2 1 32 32 H 1.08994 * 109.46876 * 59.99565 * 3 2 1 33 33 H 1.08998 * 109.47378 * 54.99711 * 4 2 1 34 34 H 1.09000 * 109.46830 * 294.99619 * 4 2 1 35 35 H 1.08998 * 109.47030 * 59.99562 * 5 4 2 36 36 H 1.09011 * 109.46996 * 300.00132 * 5 4 2 37 37 H 1.09005 * 109.47422 * 25.44280 * 7 6 5 38 38 H 1.08995 * 109.47585 * 145.44622 * 7 6 5 39 39 H 0.97000 * 120.00116 * 180.02562 * 11 10 8 40 40 H 1.08997 * 115.55019 * 309.64650 * 21 20 19 41 41 H 1.09002 * 117.49416 * 359.97438 * 22 21 20 42 42 H 1.08997 * 117.50020 * 145.02481 * 22 21 20 43 43 H 1.08997 * 117.50532 * 214.98163 * 23 21 20 44 44 H 1.09005 * 117.50074 * 359.97438 * 23 21 20 45 45 H 1.07998 * 125.45180 * 179.72588 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0532 -1.5212 2.3843 7 6 4.3850 -0.7548 3.5879 8 6 5.8592 -0.4420 3.5937 9 1 6.4863 -0.7806 2.7822 10 6 6.4075 0.2765 4.6350 11 7 7.6940 0.5490 4.6403 12 14 5.3227 0.8628 6.0382 13 1 5.2850 -0.1737 7.1010 14 1 5.8737 2.1239 6.5961 15 1 3.9473 1.1042 5.5331 16 6 4.1972 -2.8614 2.3777 17 8 3.8267 -3.5080 1.4166 18 6 4.7975 -3.5430 3.5367 19 7 4.8671 -4.8359 3.7045 20 6 5.4458 -5.2387 4.8051 21 6 5.6058 -6.6997 5.1376 22 6 6.6074 -7.0693 6.2335 23 6 6.9321 -7.3672 4.7683 24 6 5.8831 -4.2686 5.6234 25 16 5.5317 -2.7469 4.9253 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9994 0.1674 1.1420 36 1 3.8532 -1.3941 0.3001 37 1 3.8163 0.1751 3.5949 38 1 4.1345 -1.3406 4.4723 39 1 8.0797 1.0542 5.3730 40 1 4.7005 -7.3016 5.0590 41 1 7.1510 -6.2556 6.7137 42 1 6.3611 -7.9145 6.8762 43 1 6.8995 -8.4082 4.4471 44 1 7.6888 -6.7495 4.2844 45 1 6.3776 -4.4240 6.5709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520962501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:23 Heat of formation + Delta-G solvation = 9.198679 kcal Electronic energy + Delta-G solvation = -25377.474144 eV Core-core repulsion = 21907.824217 eV Total energy + Delta-G solvation = -3469.649927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32247 -40.50359 -37.95870 -37.34816 -36.63216 -34.66464 -31.83723 -30.58215 -29.54014 -27.96127 -27.31718 -25.30712 -24.76045 -23.35301 -23.15091 -20.88601 -20.58442 -20.11871 -19.20724 -19.00808 -17.75556 -17.36296 -16.72859 -16.56349 -16.23100 -15.97520 -15.67919 -15.25031 -14.88829 -14.76826 -14.57706 -14.45854 -14.30761 -14.02949 -13.67831 -13.35180 -13.14030 -12.99889 -12.71947 -12.60533 -12.37780 -12.23495 -12.15810 -11.86298 -11.78444 -11.70726 -11.57143 -11.45381 -11.41406 -11.34748 -11.13623 -10.99455 -10.54268 -10.32633 -9.61461 -9.45251 -8.39182 -6.41301 -0.59445 0.48834 1.07716 1.33663 1.38520 1.42684 1.48205 1.86245 2.20764 2.27227 2.87432 2.96150 3.25831 3.67507 3.92627 3.95944 3.98217 4.07830 4.08067 4.24240 4.29212 4.37613 4.40557 4.52688 4.55063 4.62813 4.71481 4.74949 4.82495 4.85410 4.93429 4.94461 5.06575 5.10882 5.15485 5.16666 5.20858 5.22994 5.25267 5.34579 5.50447 5.52894 5.55259 6.01651 6.30654 6.56627 6.76069 7.03905 7.14580 8.74361 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010813 B = 0.005024 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.802288 B = 5571.673075 C = 7566.907846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.120 4.120 5 C 0.119 3.881 6 N -0.583 5.583 7 C 0.196 3.804 8 C -0.532 4.532 9 H 0.045 0.955 10 C 0.056 3.944 11 N -0.910 5.910 12 Si 0.890 3.110 13 H -0.246 1.246 14 H -0.275 1.275 15 H -0.232 1.232 16 C 0.591 3.409 17 O -0.564 6.564 18 C -0.073 4.073 19 N -0.436 5.436 20 C 0.059 3.941 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.170 4.170 24 C -0.343 4.343 25 S 0.345 5.655 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.276 0.724 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.076 0.924 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 -2.825 2.775 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.159 4.159 5 C -0.002 4.002 6 N -0.313 5.313 7 C 0.073 3.927 8 C -0.576 4.576 9 H 0.063 0.937 10 C -0.149 4.149 11 N -0.546 5.546 12 Si 0.711 3.289 13 H -0.170 1.170 14 H -0.200 1.200 15 H -0.155 1.155 16 C 0.377 3.623 17 O -0.445 6.445 18 C -0.344 4.344 19 N -0.154 5.154 20 C -0.081 4.081 21 C -0.124 4.124 22 C -0.184 4.184 23 C -0.207 4.207 24 C -0.484 4.484 25 S 0.609 5.391 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.300 -2.358 2.263 8.920 hybrid contribution 0.451 -0.604 0.601 0.964 sum -7.849 -2.962 2.864 8.865 Atomic orbital electron populations 1.21792 0.94043 1.01639 1.02432 1.21035 0.96639 0.96566 0.96767 1.21900 1.01059 0.95185 1.02426 1.21941 0.93947 1.00434 0.99567 1.21686 0.95102 0.97501 0.85944 1.47772 1.63034 1.04576 1.15949 1.20091 0.96315 0.93382 0.82932 1.21314 0.92490 1.35433 1.08348 0.93689 1.25453 0.95727 0.94052 0.99634 1.69977 1.13000 1.38249 1.33409 0.86504 0.81516 0.80004 0.80851 1.16999 1.20037 1.15493 1.16960 0.78191 0.82478 0.84697 1.90691 1.51951 1.65978 1.35866 1.27117 1.11122 0.92971 1.03232 1.66314 1.15482 1.12923 1.20728 1.19605 1.01134 0.97253 0.90066 1.20432 0.95896 0.89096 1.06997 1.23138 1.00159 1.03870 0.91196 1.23020 0.96806 1.01846 0.99051 1.28101 1.09882 1.02904 1.07492 1.86340 1.43487 1.00628 1.08629 0.92338 0.91344 0.93274 0.91420 0.92939 0.91438 0.92299 0.93328 0.91166 0.88719 0.91572 0.90914 0.94335 0.91452 0.86295 0.88406 0.85423 0.86393 0.90539 0.78846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 2 C -0.09 -2.09 2.92 -10.80 -0.03 -2.12 16 3 C -0.15 -3.08 8.95 71.98 0.64 -2.43 16 4 C -0.12 -3.48 5.01 30.59 0.15 -3.33 16 5 C 0.12 4.14 5.11 86.38 0.44 4.58 16 6 N -0.58 -24.02 2.47 -830.25 -2.05 -26.07 16 7 C 0.20 8.01 3.79 85.63 0.32 8.33 16 8 C -0.53 -25.45 7.19 25.60 0.18 -25.27 16 9 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 10 C 0.06 2.69 4.94 84.66 0.42 3.11 16 11 N -0.91 -47.91 13.96 21.45 0.30 -47.61 16 12 Si 0.89 34.29 26.92 68.60 1.85 36.14 16 13 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 14 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 16 C 0.59 27.45 7.62 86.61 0.66 28.11 16 17 O -0.56 -28.60 16.70 -4.10 -0.07 -28.66 16 18 C -0.07 -3.32 7.19 87.25 0.63 -2.70 16 19 N -0.44 -19.49 10.57 -178.25 -1.88 -21.38 16 20 C 0.06 2.21 6.35 41.81 0.27 2.47 16 21 C -0.10 -3.00 6.28 -11.54 -0.07 -3.08 16 22 C -0.15 -3.10 9.89 30.60 0.30 -2.79 16 23 C -0.17 -4.22 10.23 30.60 0.31 -3.90 16 24 C -0.34 -12.05 10.23 66.91 0.68 -11.37 16 25 S 0.34 13.95 15.22 -56.49 -0.86 13.09 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.17 6.57 -2.39 -0.02 1.16 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 3.08 6.50 -2.39 -0.02 3.07 16 36 H 0.07 2.44 7.48 -2.38 -0.02 2.42 16 37 H 0.07 2.71 7.09 -2.38 -0.02 2.69 16 38 H 0.04 1.56 4.36 -18.82 -0.08 1.48 16 39 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 40 H 0.12 3.26 8.14 -2.39 -0.02 3.25 16 41 H 0.10 2.04 6.72 -2.39 -0.02 2.02 16 42 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.19 5.43 6.85 -2.91 -0.02 5.41 16 Total: -1.00 -62.49 371.13 3.71 -58.78 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.85 Total: 28.20 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.58 Total: -12.49 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -3.63 Total: -95.06 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.07 Total: -28.66 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 1.85 Total: 36.14 kcal Atomic # 16 Polarization: 13.95 SS G_CDS: -0.86 Total: 13.09 kcal Total: -62.49 3.71 -58.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520962501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.977 kcal (2) G-P(sol) polarization free energy of solvation -62.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds