Wall clock time and date at job start Tue Mar 31 2020 13:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46544 * 2 1 4 4 C 1.37474 * 123.35346 * 264.87997 * 3 2 1 5 5 C 1.33814 * 115.10300 * 180.27584 * 4 3 2 6 6 S 1.70621 * 110.95439 * 359.74342 * 5 4 3 7 7 C 1.36655 * 123.35218 * 84.68263 * 3 2 1 8 8 C 1.46583 * 125.45581 * 0.02562 * 7 3 2 9 9 O 1.21700 * 119.99700 * 53.78218 * 8 7 3 10 10 N 1.34770 * 120.00094 * 233.77599 * 8 7 3 11 11 C 1.46924 * 120.63269 * 5.27691 * 10 8 7 12 12 C 1.53188 * 108.89775 * 233.67705 * 11 10 8 13 13 C 1.53034 * 109.31278 * 305.29502 * 12 11 10 14 14 C 1.53039 * 109.54152 * 61.36358 * 13 12 11 15 15 C 1.47204 * 120.81687 * 185.42223 * 10 8 7 16 16 H 1.09003 * 109.55818 * 246.16472 * 15 10 8 17 17 C 1.53001 * 109.53079 * 6.53426 * 15 10 8 18 18 N 1.46503 * 109.47572 * 278.07038 * 17 15 10 19 19 C 1.36933 * 120.00503 * 183.39934 * 18 17 15 20 20 H 1.07998 * 119.99755 * 340.88297 * 19 18 17 21 21 C 1.38810 * 120.00301 * 160.88927 * 19 18 17 22 22 N 1.31621 * 120.00012 * 173.96197 * 21 19 18 23 23 Si 1.86798 * 119.99802 * 353.96606 * 21 19 18 24 24 H 1.48505 * 109.46987 * 84.38577 * 23 21 19 25 25 H 1.48505 * 109.46716 * 204.37995 * 23 21 19 26 26 H 1.48489 * 109.47210 * 324.38223 * 23 21 19 27 27 H 1.09002 * 109.46973 * 184.38914 * 1 2 3 28 28 H 1.08998 * 109.47379 * 304.38875 * 1 2 3 29 29 H 1.09000 * 109.47422 * 64.39258 * 1 2 3 30 30 H 1.08993 * 109.46991 * 240.00168 * 2 1 3 31 31 H 1.08991 * 109.47162 * 119.99675 * 2 1 3 32 32 H 1.08000 * 122.44595 * 0.04430 * 4 3 2 33 33 H 1.07996 * 124.52430 * 179.77178 * 5 4 3 34 34 H 1.09005 * 109.58661 * 113.81727 * 11 10 8 35 35 H 1.09002 * 109.58880 * 353.53828 * 11 10 8 36 36 H 1.09001 * 109.49830 * 65.24535 * 12 11 10 37 37 H 1.08999 * 109.49812 * 185.34196 * 12 11 10 38 38 H 1.09005 * 109.46446 * 181.38271 * 13 12 11 39 39 H 1.09003 * 109.46232 * 301.35490 * 13 12 11 40 40 H 1.08994 * 109.49665 * 58.58466 * 14 13 12 41 41 H 1.08999 * 109.50077 * 178.65455 * 14 13 12 42 42 H 1.09003 * 109.47437 * 38.07039 * 17 15 10 43 43 H 1.09002 * 109.47197 * 158.06636 * 17 15 10 44 44 H 0.97008 * 119.99727 * 3.38997 * 18 17 15 45 45 H 0.97000 * 119.99957 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3807 2.0994 -1.1437 5 6 2.8113 3.3517 -0.9520 6 16 2.7952 3.7554 0.7057 7 6 2.1828 2.1645 1.1366 8 6 1.8874 1.7069 2.4974 9 8 2.3894 0.6807 2.9168 10 7 1.0598 2.4227 3.2843 11 6 0.3562 3.5994 2.7561 12 6 0.6431 4.7985 3.6651 13 6 0.2710 4.4418 5.1060 14 6 1.1246 3.2626 5.5782 15 6 0.8431 2.0460 4.6907 16 1 -0.1895 1.7249 4.8276 17 6 1.7919 0.9062 5.0670 18 7 1.2262 -0.3685 4.6181 19 6 1.8690 -1.5425 4.9070 20 1 2.9139 -1.5331 5.1797 21 6 1.1776 -2.7448 4.8493 22 7 1.8205 -3.8820 5.0099 23 14 -0.6652 -2.7487 4.5435 24 1 -0.9248 -2.6781 3.0831 25 1 -1.2551 -3.9967 5.0913 26 1 -1.2805 -1.5749 5.2131 27 1 -0.3633 -1.0247 0.0786 28 1 -0.3634 0.5804 0.8480 29 1 -0.3634 0.4442 -0.9267 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8899 32 1 2.3154 1.6529 -2.1249 33 1 3.1266 4.0182 -1.7411 34 1 -0.7162 3.4050 2.7351 35 1 0.7084 3.8133 1.7470 36 1 1.7029 5.0483 3.6143 37 1 0.0513 5.6532 3.3375 38 1 0.4511 5.3017 5.7512 39 1 -0.7831 4.1680 5.1518 40 1 2.1798 3.5267 5.5093 41 1 0.8759 3.0244 6.6124 42 1 2.7578 1.0640 4.5872 43 1 1.9229 0.8847 6.1489 44 1 0.3961 -0.3808 4.1163 45 1 1.3373 -4.7222 4.9699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570093447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:16 Heat of formation + Delta-G solvation = 37.923393 kcal Electronic energy + Delta-G solvation = -26753.336622 eV Core-core repulsion = 23284.932292 eV Total energy + Delta-G solvation = -3468.404330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35024 -38.39325 -36.85154 -34.63218 -32.77342 -32.68124 -31.99863 -30.23442 -29.16486 -26.45456 -25.20814 -24.38829 -22.56597 -22.27564 -21.87088 -20.73389 -19.75915 -18.22662 -17.84962 -17.02619 -15.95889 -15.82179 -15.34596 -14.80250 -14.46546 -14.34021 -14.08831 -13.96923 -13.79374 -13.57173 -13.31982 -13.09772 -12.76986 -12.57474 -12.53465 -12.34673 -12.09066 -11.80091 -11.73228 -11.42498 -11.29824 -11.07194 -10.86883 -10.82493 -10.73948 -10.66124 -10.64475 -10.33070 -10.07233 -9.41596 -8.84872 -8.58871 -8.55743 -8.39334 -8.16258 -6.77926 -5.57168 -2.89034 0.70380 1.42439 1.89348 2.53634 3.13169 3.43236 3.49100 3.55551 3.57710 4.63216 4.72770 4.78633 4.80969 4.82289 4.93515 5.05571 5.22709 5.25704 5.31333 5.40086 5.45334 5.53385 5.58375 5.69843 5.75110 5.75224 5.75680 5.82680 5.85624 5.93218 6.00388 6.04206 6.06600 6.14554 6.23870 6.29516 6.35171 6.49181 6.55576 6.64134 6.83833 7.22924 7.70505 8.32929 8.60364 8.66417 9.46533 10.17319 10.42811 11.62328 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.005982 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.567874 B = 4679.613891 C = 6187.932818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.040 4.040 4 C -0.134 4.134 5 C -0.250 4.250 6 S 0.185 5.815 7 C -0.242 4.242 8 C 0.561 3.439 9 O -0.440 6.440 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.127 4.127 15 C 0.139 3.861 16 H 0.070 0.930 17 C 0.156 3.844 18 N -0.725 5.725 19 C -0.213 4.213 20 H 0.081 0.919 21 C 0.001 3.999 22 N -0.939 5.939 23 Si 0.876 3.124 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.278 1.278 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.351 0.649 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 22.153 -10.318 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.166 4.166 5 C -0.387 4.387 6 S 0.453 5.547 7 C -0.362 4.362 8 C 0.345 3.655 9 O -0.311 6.311 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.171 4.171 13 C -0.156 4.156 14 C -0.166 4.166 15 C 0.037 3.963 16 H 0.088 0.912 17 C 0.029 3.971 18 N -0.368 5.368 19 C -0.343 4.343 20 H 0.099 0.901 21 C -0.193 4.193 22 N -0.588 5.588 23 Si 0.707 3.293 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.203 1.203 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.182 0.818 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.026 22.741 -9.154 24.598 hybrid contribution -1.711 -1.224 -1.505 2.586 sum -3.737 21.518 -10.659 24.302 Atomic orbital electron populations 1.21662 0.94694 1.02188 1.01171 1.20419 0.96048 0.90764 1.04528 1.19424 0.98190 0.97294 0.90479 1.19883 1.03099 0.94103 0.99536 1.25142 1.10028 1.01681 1.01863 1.83009 1.61325 1.11842 0.98516 1.24699 1.14475 0.98709 0.98361 1.17116 0.80813 0.84425 0.83129 1.91211 1.49046 1.20705 1.70129 1.47953 1.46052 1.29186 1.11309 1.21844 0.97122 0.85297 0.98085 1.21912 1.02122 0.97386 0.95714 1.21519 1.00049 0.98191 0.95868 1.21915 1.00628 0.94564 0.99444 1.21670 1.00625 0.95173 0.78860 0.91223 1.21114 0.96318 0.83944 0.95760 1.42251 1.27218 1.01905 1.65442 1.18940 0.94657 0.83133 1.37620 0.90088 1.24827 0.96906 0.95424 1.02178 1.69722 1.34663 0.96643 1.57754 0.86644 0.88361 0.76624 0.77714 1.21529 1.22312 1.20326 0.92021 0.92892 0.93136 0.90911 0.88419 0.84233 0.81895 0.91679 0.89821 0.91511 0.90952 0.91778 0.91832 0.91382 0.90462 0.92448 0.95915 0.81817 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 37.16 0.37 -1.65 16 2 C -0.08 -1.21 5.93 -27.88 -0.17 -1.38 16 3 C -0.04 -0.58 5.16 -105.47 -0.54 -1.13 16 4 C -0.13 -1.56 9.96 -41.41 -0.41 -1.97 16 5 C -0.25 -2.54 10.92 29.18 0.32 -2.22 16 6 S 0.19 2.04 20.92 -107.50 -2.25 -0.21 16 7 C -0.24 -3.62 5.05 -36.79 -0.19 -3.81 16 8 C 0.56 9.93 6.86 -12.90 -0.09 9.85 16 9 O -0.44 -9.91 10.39 5.19 0.05 -9.86 16 10 N -0.61 -9.19 2.98 -166.58 -0.50 -9.69 16 11 C 0.10 1.13 6.15 -3.71 -0.02 1.11 16 12 C -0.13 -1.21 6.08 -26.62 -0.16 -1.37 16 13 C -0.12 -1.14 5.88 -26.69 -0.16 -1.30 16 14 C -0.13 -1.56 5.27 -26.61 -0.14 -1.70 16 15 C 0.14 2.24 2.95 -67.45 -0.20 2.04 16 16 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 17 C 0.16 3.27 4.97 -4.04 -0.02 3.25 16 18 N -0.73 -18.42 3.30 -59.91 -0.20 -18.62 16 19 C -0.21 -6.41 10.36 -15.06 -0.16 -6.57 16 20 H 0.08 2.67 8.06 -52.49 -0.42 2.24 16 21 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 22 N -0.94 -30.97 13.97 55.49 0.78 -30.20 16 23 Si 0.88 23.35 27.46 -169.99 -4.67 18.68 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.98 8.12 -51.93 -0.42 0.55 16 31 H 0.10 1.92 6.85 -51.93 -0.36 1.56 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.89 4.62 -48.64 -0.22 0.67 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.32 5.64 -52.63 -0.30 1.02 16 43 H 0.02 0.49 7.97 -51.93 -0.41 0.08 16 44 H 0.35 8.85 6.25 -40.82 -0.26 8.60 16 45 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -35.04 362.67 -10.00 -45.04 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.02 Total: 6.28 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.66 Total: -6.89 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.08 Total: -58.50 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.05 Total: -9.86 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.67 Total: 18.68 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.25 Total: -0.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.04 -10.00 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570093447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.961 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds