Wall clock time and date at job start Tue Mar 31 2020 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46544 * 2 1 4 4 C 1.37474 * 123.35346 * 264.87997 * 3 2 1 5 5 C 1.33814 * 115.10300 * 180.27584 * 4 3 2 6 6 S 1.70621 * 110.95439 * 359.74342 * 5 4 3 7 7 C 1.36655 * 123.35218 * 84.68263 * 3 2 1 8 8 C 1.46583 * 125.45581 * 0.02562 * 7 3 2 9 9 O 1.21700 * 119.99700 * 53.78218 * 8 7 3 10 10 N 1.34770 * 120.00094 * 233.77599 * 8 7 3 11 11 C 1.46924 * 120.63269 * 5.27691 * 10 8 7 12 12 C 1.53188 * 108.89775 * 233.67705 * 11 10 8 13 13 C 1.53034 * 109.31278 * 305.29502 * 12 11 10 14 14 C 1.53039 * 109.54152 * 61.36358 * 13 12 11 15 15 C 1.47204 * 120.81687 * 185.42223 * 10 8 7 16 16 H 1.09003 * 109.55818 * 246.16472 * 15 10 8 17 17 C 1.53001 * 109.53079 * 6.53426 * 15 10 8 18 18 N 1.46503 * 109.47572 * 278.07038 * 17 15 10 19 19 C 1.36933 * 120.00503 * 183.39934 * 18 17 15 20 20 H 1.07998 * 119.99755 * 340.88297 * 19 18 17 21 21 C 1.38810 * 120.00301 * 160.88927 * 19 18 17 22 22 N 1.31621 * 120.00012 * 173.96197 * 21 19 18 23 23 Si 1.86798 * 119.99802 * 353.96606 * 21 19 18 24 24 H 1.48505 * 109.46987 * 84.38577 * 23 21 19 25 25 H 1.48505 * 109.46716 * 204.37995 * 23 21 19 26 26 H 1.48489 * 109.47210 * 324.38223 * 23 21 19 27 27 H 1.09002 * 109.46973 * 184.38914 * 1 2 3 28 28 H 1.08998 * 109.47379 * 304.38875 * 1 2 3 29 29 H 1.09000 * 109.47422 * 64.39258 * 1 2 3 30 30 H 1.08993 * 109.46991 * 240.00168 * 2 1 3 31 31 H 1.08991 * 109.47162 * 119.99675 * 2 1 3 32 32 H 1.08000 * 122.44595 * 0.04430 * 4 3 2 33 33 H 1.07996 * 124.52430 * 179.77178 * 5 4 3 34 34 H 1.09005 * 109.58661 * 113.81727 * 11 10 8 35 35 H 1.09002 * 109.58880 * 353.53828 * 11 10 8 36 36 H 1.09001 * 109.49830 * 65.24535 * 12 11 10 37 37 H 1.08999 * 109.49812 * 185.34196 * 12 11 10 38 38 H 1.09005 * 109.46446 * 181.38271 * 13 12 11 39 39 H 1.09003 * 109.46232 * 301.35490 * 13 12 11 40 40 H 1.08994 * 109.49665 * 58.58466 * 14 13 12 41 41 H 1.08999 * 109.50077 * 178.65455 * 14 13 12 42 42 H 1.09003 * 109.47437 * 38.07039 * 17 15 10 43 43 H 1.09002 * 109.47197 * 158.06636 * 17 15 10 44 44 H 0.97008 * 119.99727 * 3.38997 * 18 17 15 45 45 H 0.97000 * 119.99957 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3807 2.0994 -1.1437 5 6 2.8113 3.3517 -0.9520 6 16 2.7952 3.7554 0.7057 7 6 2.1828 2.1645 1.1366 8 6 1.8874 1.7069 2.4974 9 8 2.3894 0.6807 2.9168 10 7 1.0598 2.4227 3.2843 11 6 0.3562 3.5994 2.7561 12 6 0.6431 4.7985 3.6651 13 6 0.2710 4.4418 5.1060 14 6 1.1246 3.2626 5.5782 15 6 0.8431 2.0460 4.6907 16 1 -0.1895 1.7249 4.8276 17 6 1.7919 0.9062 5.0670 18 7 1.2262 -0.3685 4.6181 19 6 1.8690 -1.5425 4.9070 20 1 2.9139 -1.5331 5.1797 21 6 1.1776 -2.7448 4.8493 22 7 1.8205 -3.8820 5.0099 23 14 -0.6652 -2.7487 4.5435 24 1 -0.9248 -2.6781 3.0831 25 1 -1.2551 -3.9967 5.0913 26 1 -1.2805 -1.5749 5.2131 27 1 -0.3633 -1.0247 0.0786 28 1 -0.3634 0.5804 0.8480 29 1 -0.3634 0.4442 -0.9267 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8899 32 1 2.3154 1.6529 -2.1249 33 1 3.1266 4.0182 -1.7411 34 1 -0.7162 3.4050 2.7351 35 1 0.7084 3.8133 1.7470 36 1 1.7029 5.0483 3.6143 37 1 0.0513 5.6532 3.3375 38 1 0.4511 5.3017 5.7512 39 1 -0.7831 4.1680 5.1518 40 1 2.1798 3.5267 5.5093 41 1 0.8759 3.0244 6.6124 42 1 2.7578 1.0640 4.5872 43 1 1.9229 0.8847 6.1489 44 1 0.3961 -0.3808 4.1163 45 1 1.3373 -4.7222 4.9699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570093447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:15 Heat of formation + Delta-G solvation = 15.393217 kcal Electronic energy + Delta-G solvation = -26754.313603 eV Core-core repulsion = 23284.932292 eV Total energy + Delta-G solvation = -3469.381312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60437 -39.41579 -38.03918 -36.53262 -34.03859 -33.80924 -33.69720 -31.99973 -30.20466 -27.90893 -26.46660 -25.57974 -24.12712 -23.43016 -23.22365 -22.02295 -20.82803 -19.70502 -19.23780 -18.53033 -17.14757 -17.02734 -16.65378 -16.44421 -15.86366 -15.64802 -15.29366 -15.11673 -14.86445 -14.83293 -14.60691 -14.48676 -14.21569 -14.00144 -13.87971 -13.74020 -13.38397 -13.15204 -12.96679 -12.83327 -12.67862 -12.45072 -12.34189 -12.09254 -11.98237 -11.85051 -11.77913 -11.70392 -11.55090 -11.42431 -10.89942 -10.13459 -9.71447 -9.49292 -9.28154 -8.93913 -7.99594 -5.29275 -0.27869 0.44357 1.00275 1.31491 1.35945 1.45757 1.55721 1.92325 2.21460 2.50249 3.30934 3.53430 3.66819 3.86331 3.88246 3.96025 4.06310 4.12708 4.25977 4.28662 4.31816 4.36270 4.37959 4.49606 4.57371 4.68713 4.70602 4.81563 4.83144 4.96195 5.02848 5.03870 5.08534 5.11081 5.11751 5.18720 5.24057 5.28714 5.43769 5.48615 5.49817 5.76623 5.87825 6.25170 6.48911 7.15023 7.34782 7.92140 8.14972 9.23708 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.005982 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.567874 B = 4679.613891 C = 6187.932818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C -0.046 4.046 4 C -0.149 4.149 5 C -0.229 4.229 6 S 0.238 5.762 7 C -0.287 4.287 8 C 0.560 3.440 9 O -0.511 6.511 10 N -0.605 5.605 11 C 0.094 3.906 12 C -0.127 4.127 13 C -0.113 4.113 14 C -0.121 4.121 15 C 0.145 3.855 16 H 0.067 0.933 17 C 0.156 3.844 18 N -0.722 5.722 19 C -0.204 4.204 20 H 0.034 0.966 21 C -0.066 4.066 22 N -0.988 5.988 23 Si 0.953 3.047 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.256 1.256 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.162 0.838 33 H 0.202 0.798 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.017 0.983 44 H 0.352 0.648 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 26.546 -12.371 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C -0.061 4.061 4 C -0.180 4.180 5 C -0.366 4.366 6 S 0.506 5.494 7 C -0.407 4.407 8 C 0.346 3.654 9 O -0.386 6.386 10 N -0.340 5.340 11 C -0.029 4.029 12 C -0.165 4.165 13 C -0.150 4.150 14 C -0.159 4.159 15 C 0.042 3.958 16 H 0.085 0.915 17 C 0.030 3.970 18 N -0.364 5.364 19 C -0.336 4.336 20 H 0.052 0.948 21 C -0.256 4.256 22 N -0.640 5.640 23 Si 0.780 3.220 24 H -0.208 1.208 25 H -0.222 1.222 26 H -0.180 1.180 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.180 0.820 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.183 0.817 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.134 27.239 -11.206 29.743 hybrid contribution -0.903 -2.485 -0.951 2.810 sum -5.037 24.754 -12.157 28.035 Atomic orbital electron populations 1.21604 0.93861 1.01466 1.02068 1.20319 0.96878 0.91951 1.02637 1.19522 0.98326 0.96503 0.91714 1.19983 1.03913 0.94679 0.99395 1.25638 1.07200 1.01416 1.02310 1.82760 1.59716 1.08175 0.98780 1.24534 1.17306 1.01904 0.96969 1.17589 0.79987 0.83604 0.84195 1.91175 1.51758 1.23702 1.71992 1.48081 1.45393 1.29907 1.10631 1.22167 0.97170 0.84502 0.99024 1.21926 1.02744 0.97126 0.94751 1.21514 0.99586 0.97379 0.96558 1.21889 1.01180 0.93977 0.98890 1.21516 0.98688 0.95036 0.80549 0.91470 1.21119 0.96861 0.84109 0.94869 1.42150 1.26823 1.01968 1.65470 1.18807 0.92941 0.85382 1.36456 0.94825 1.25609 1.02405 0.94727 1.02874 1.69917 1.36808 0.97361 1.59904 0.85430 0.81473 0.77205 0.77899 1.20804 1.22186 1.18027 0.93162 0.94465 0.89941 0.89186 0.93818 0.82003 0.78098 0.90710 0.89040 0.91610 0.87634 0.89389 0.91188 0.91842 0.89905 0.94619 0.96490 0.81685 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.89 71.98 0.71 -3.11 16 2 C -0.08 -2.52 5.93 29.85 0.18 -2.34 16 3 C -0.05 -1.30 5.16 -20.42 -0.11 -1.40 16 4 C -0.15 -3.02 9.96 21.08 0.21 -2.81 16 5 C -0.23 -3.65 10.92 66.81 0.73 -2.92 16 6 S 0.24 4.54 20.92 -56.49 -1.18 3.36 16 7 C -0.29 -8.49 5.05 24.08 0.12 -8.37 16 8 C 0.56 20.56 6.86 86.42 0.59 21.15 16 9 O -0.51 -24.85 10.39 -4.35 -0.05 -24.90 16 10 N -0.60 -18.11 2.98 -799.15 -2.39 -20.50 16 11 C 0.09 1.86 6.15 86.36 0.53 2.39 16 12 C -0.13 -1.81 6.08 30.67 0.19 -1.62 16 13 C -0.11 -1.75 5.88 30.62 0.18 -1.57 16 14 C -0.12 -2.79 5.27 30.67 0.16 -2.63 16 15 C 0.15 4.68 2.95 44.92 0.13 4.81 16 16 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 17 C 0.16 6.96 4.97 86.38 0.43 7.39 16 18 N -0.72 -38.61 3.30 -343.44 -1.13 -39.74 16 19 C -0.20 -13.12 10.36 84.03 0.87 -12.25 16 20 H 0.03 2.43 8.06 -2.91 -0.02 2.41 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.99 -68.56 13.97 21.65 0.30 -68.26 16 23 Si 0.95 50.05 27.46 68.60 1.88 51.93 16 24 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16 26 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 31 H 0.04 1.87 6.85 -2.39 -0.02 1.86 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.09 1.69 4.62 -4.48 -0.02 1.67 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.79 5.64 -13.47 -0.08 1.72 16 43 H 0.02 0.78 7.97 -2.39 -0.02 0.76 16 44 H 0.35 18.36 6.25 -92.70 -0.58 17.78 16 45 H 0.26 16.77 8.31 -92.71 -0.77 16.00 16 Total: -1.00 -84.45 362.67 3.17 -81.28 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.34 Total: 23.90 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.40 Total: -7.08 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -3.22 Total: -128.50 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 1.88 Total: 51.93 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.18 Total: 3.36 kcal Total: -84.45 3.17 -81.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570093447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.670 kcal (2) G-P(sol) polarization free energy of solvation -84.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds