Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 C 1.52997 * 109.46902 * 239.99734 * 2 1 3 5 5 C 1.52995 * 109.46705 * 119.99517 * 2 1 3 6 6 H 1.09002 * 109.47854 * 300.00229 * 5 2 1 7 7 N 1.46900 * 109.47002 * 179.97438 * 5 2 1 8 8 C 1.50705 * 109.47070 * 60.00389 * 5 2 1 9 9 O 1.21295 * 120.00054 * 99.99323 * 8 5 2 10 10 N 1.34776 * 120.00105 * 279.99540 * 8 5 2 11 11 C 1.40139 * 120.00334 * 184.43035 * 10 8 5 12 12 C 1.38653 * 120.09603 * 325.29187 * 11 10 8 13 13 C 1.38243 * 120.00761 * 179.97438 * 12 11 10 14 14 C 1.38304 * 120.21308 * 0.02562 * 13 12 11 15 15 C 1.38200 * 120.19521 * 0.02562 * 14 13 12 16 16 C 1.38782 * 119.98854 * 359.97438 * 15 14 13 17 17 S 1.76207 * 120.10363 * 180.02562 * 16 15 14 18 18 C 1.81403 * 102.99877 * 359.97438 * 17 16 15 19 19 C 1.50692 * 109.46941 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00334 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00047 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99911 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00452 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47102 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47382 * 119.99875 * 23 21 19 26 26 H 1.48500 * 109.47287 * 240.00074 * 23 21 19 27 27 H 1.09000 * 109.46893 * 300.00295 * 1 2 3 28 28 H 1.09002 * 109.46773 * 60.00018 * 1 2 3 29 29 H 1.08991 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47270 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47352 * 299.99627 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99555 * 3 2 1 33 33 H 1.09000 * 109.47104 * 299.99725 * 4 2 1 34 34 H 1.09002 * 109.47204 * 60.00512 * 4 2 1 35 35 H 1.08998 * 109.46543 * 179.97438 * 4 2 1 36 36 H 1.00902 * 111.00045 * 300.00671 * 7 5 2 37 37 H 1.00900 * 111.00263 * 63.95722 * 7 5 2 38 38 H 0.97005 * 119.99417 * 4.42553 * 10 8 5 39 39 H 1.08004 * 119.99342 * 0.02562 * 12 11 10 40 40 H 1.08004 * 119.89917 * 180.02562 * 13 12 11 41 41 H 1.07993 * 119.90066 * 180.27240 * 14 13 12 42 42 H 1.08002 * 120.00317 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.46952 * 300.00423 * 18 17 16 44 44 H 1.09003 * 109.46937 * 60.00035 * 18 17 16 45 45 H 0.96999 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 1.6766 -0.2073 2.1393 7 7 3.5090 -0.7217 1.2491 8 6 1.5376 -2.1420 1.2493 9 8 2.2661 -3.0428 0.8901 10 7 0.2789 -2.4118 1.6485 11 6 -0.1585 -3.7402 1.7373 12 6 0.2987 -4.6848 0.8311 13 6 -0.1337 -5.9948 0.9207 14 6 -1.0228 -6.3680 1.9122 15 6 -1.4849 -5.4333 2.8192 16 6 -1.0562 -4.1159 2.7369 17 16 -1.6429 -2.9218 3.8922 18 6 -2.7516 -3.8901 4.9524 19 6 -3.3441 -2.9949 6.0099 20 1 -3.0805 -1.9480 6.0409 21 6 -4.2229 -3.5123 6.9379 22 7 -4.5435 -4.7872 6.9005 23 14 -4.9579 -2.4025 8.2483 24 1 -4.4400 -1.0216 8.0750 25 1 -6.4373 -2.3967 8.1193 26 1 -4.5804 -2.9070 9.5930 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 3.8703 -1.1930 0.4333 37 1 3.8710 0.2179 1.3138 38 1 -0.3241 -1.6863 1.8744 39 1 0.9934 -4.3972 0.0557 40 1 0.2239 -6.7293 0.2142 41 1 -1.3538 -7.3937 1.9802 42 1 -2.1788 -5.7282 3.5925 43 1 -3.5520 -4.3165 4.3475 44 1 -2.1891 -4.6930 5.4289 45 1 -5.1620 -5.1511 7.5531 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573458163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -24.192762 kcal Electronic energy + Delta-G solvation = -25106.734770 eV Core-core repulsion = 21635.636882 eV Total energy + Delta-G solvation = -3471.097888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86013 -38.75298 -37.23020 -34.72488 -33.28130 -32.55005 -30.75782 -29.76443 -28.61730 -27.72210 -27.52225 -25.95945 -23.50901 -22.69411 -22.13848 -20.52269 -19.26225 -17.86003 -17.43426 -16.74559 -16.29297 -15.97581 -15.31931 -15.15369 -14.86987 -14.84210 -14.46004 -14.22356 -14.04538 -13.52439 -13.29539 -13.00965 -12.96013 -12.73229 -12.53047 -12.40759 -12.31926 -12.20719 -11.97776 -11.75216 -11.61479 -11.28094 -11.15402 -11.10398 -10.99166 -10.76646 -10.26968 -10.01985 -9.70555 -9.66676 -9.23060 -9.15791 -8.88086 -8.66740 -8.04024 -6.61189 -6.29979 -4.35783 1.51333 1.69502 2.37505 2.63366 3.09705 3.18990 3.26720 3.31383 3.59173 4.07784 4.26674 4.28932 4.32714 4.39134 4.55401 4.80995 4.97812 5.07770 5.15650 5.24701 5.28419 5.33583 5.36184 5.41125 5.53775 5.56218 5.58956 5.65560 5.80067 5.81658 5.83631 5.95506 5.97279 6.21299 6.48741 6.54782 6.72214 6.78227 6.85437 6.92170 6.95842 7.19990 7.28364 7.49998 7.62911 7.85856 8.18859 8.65409 9.28438 10.81240 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003507 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.652592 B = 7981.025318 C = 9459.725807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.147 4.147 5 C 0.085 3.915 6 H 0.106 0.894 7 N -0.825 5.825 8 C 0.527 3.473 9 O -0.516 6.516 10 N -0.662 5.662 11 C 0.146 3.854 12 C -0.107 4.107 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.118 4.118 16 C -0.092 4.092 17 S -0.167 6.167 18 C 0.076 3.924 19 C -0.519 4.519 20 H 0.069 0.931 21 C 0.068 3.932 22 N -0.888 5.888 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.351 0.649 37 H 0.347 0.653 38 H 0.412 0.588 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.135 0.865 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 7.916 -15.656 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.204 4.204 5 C -0.030 4.030 6 H 0.124 0.876 7 N -0.358 5.358 8 C 0.314 3.686 9 O -0.390 6.390 10 N -0.309 5.309 11 C 0.046 3.954 12 C -0.129 4.129 13 C -0.147 4.147 14 C -0.135 4.135 15 C -0.142 4.142 16 C -0.207 4.207 17 S 0.079 5.921 18 C -0.071 4.071 19 C -0.558 4.558 20 H 0.087 0.913 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.250 0.750 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.397 8.010 -14.934 20.422 hybrid contribution -1.201 -0.055 -0.027 1.203 sum 10.196 7.956 -14.961 19.776 Atomic orbital electron populations 1.22113 0.93612 1.03027 1.02882 1.21277 0.97059 0.96217 0.95567 1.21889 1.00811 0.94572 1.02698 1.21929 1.01001 1.00842 0.96667 1.21450 0.90317 0.92448 0.98811 0.87628 1.58547 1.04449 1.23186 1.49638 1.20453 0.80728 0.91058 0.76403 1.90658 1.55626 1.47166 1.45595 1.43676 1.13579 1.06937 1.66667 1.17180 0.98304 0.84530 0.95400 1.21059 1.00573 0.92821 0.98418 1.20934 0.98765 0.95702 0.99338 1.21035 0.97855 0.99154 0.95429 1.21239 1.01096 0.91526 1.00363 1.21910 1.01989 0.98266 0.98530 1.85064 1.56280 1.18621 1.32089 1.21373 0.94049 0.96805 0.94863 1.20642 1.27065 0.95738 1.12377 0.91306 1.24952 0.95796 0.95361 0.97535 1.69950 1.34144 1.12335 1.36162 0.86272 0.78834 0.80578 0.80848 1.19381 1.20632 1.20622 0.91675 0.91764 0.91662 0.92609 0.91890 0.91917 0.91992 0.92088 0.92505 0.83331 0.83806 0.74967 0.84661 0.86198 0.86118 0.84733 0.93749 0.93716 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 7.44 37.16 0.28 -1.07 16 2 C -0.10 -0.80 0.62 -154.51 -0.10 -0.90 16 3 C -0.14 -0.89 8.14 37.16 0.30 -0.59 16 4 C -0.15 -1.24 7.88 37.16 0.29 -0.95 16 5 C 0.09 0.89 2.58 -68.86 -0.18 0.71 16 6 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 7 N -0.83 -8.19 8.81 -5.65 -0.05 -8.24 16 8 C 0.53 7.40 5.26 -10.98 -0.06 7.34 16 9 O -0.52 -8.59 13.38 5.54 0.07 -8.52 16 10 N -0.66 -9.73 3.85 -9.71 -0.04 -9.77 16 11 C 0.15 2.52 6.32 -83.43 -0.53 1.99 16 12 C -0.11 -1.73 8.70 -39.43 -0.34 -2.08 16 13 C -0.13 -1.87 10.04 -39.56 -0.40 -2.27 16 14 C -0.11 -1.80 10.04 -39.57 -0.40 -2.19 16 15 C -0.12 -2.18 9.36 -39.39 -0.37 -2.55 16 16 C -0.09 -1.75 6.12 -38.91 -0.24 -1.99 16 17 S -0.17 -3.47 20.72 -107.50 -2.23 -5.70 16 18 C 0.08 1.89 4.09 36.00 0.15 2.03 16 19 C -0.52 -13.99 9.13 -34.44 -0.31 -14.30 16 20 H 0.07 1.84 7.71 -52.49 -0.40 1.43 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 23 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.65 5.88 -51.93 -0.31 0.35 16 30 H 0.05 0.30 6.76 -51.93 -0.35 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.65 7.00 -51.93 -0.36 0.29 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.44 6.67 -51.93 -0.35 0.09 16 36 H 0.35 3.49 6.75 -39.29 -0.27 3.23 16 37 H 0.35 2.54 7.39 -39.29 -0.29 2.25 16 38 H 0.41 5.56 6.57 -40.82 -0.27 5.30 16 39 H 0.14 2.13 6.20 -52.48 -0.33 1.81 16 40 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.13 2.65 5.88 -52.49 -0.31 2.34 16 43 H 0.04 1.15 7.75 -51.92 -0.40 0.74 16 44 H 0.04 1.17 7.75 -51.92 -0.40 0.77 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -30.11 367.67 -9.53 -39.64 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.55 Total: 10.73 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.99 Total: -15.06 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.65 Total: -42.27 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.23 Total: -5.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.11 -9.53 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573458163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.446 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds