Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 C 1.52997 * 109.46902 * 239.99734 * 2 1 3 5 5 C 1.52995 * 109.46705 * 119.99517 * 2 1 3 6 6 H 1.09002 * 109.47854 * 300.00229 * 5 2 1 7 7 N 1.46900 * 109.47002 * 179.97438 * 5 2 1 8 8 C 1.50705 * 109.47070 * 60.00389 * 5 2 1 9 9 O 1.21295 * 120.00054 * 99.99323 * 8 5 2 10 10 N 1.34776 * 120.00105 * 279.99540 * 8 5 2 11 11 C 1.40139 * 120.00334 * 184.43035 * 10 8 5 12 12 C 1.38653 * 120.09603 * 325.29187 * 11 10 8 13 13 C 1.38243 * 120.00761 * 179.97438 * 12 11 10 14 14 C 1.38304 * 120.21308 * 0.02562 * 13 12 11 15 15 C 1.38200 * 120.19521 * 0.02562 * 14 13 12 16 16 C 1.38782 * 119.98854 * 359.97438 * 15 14 13 17 17 S 1.76207 * 120.10363 * 180.02562 * 16 15 14 18 18 C 1.81403 * 102.99877 * 359.97438 * 17 16 15 19 19 C 1.50692 * 109.46941 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00334 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00047 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99911 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00452 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47102 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47382 * 119.99875 * 23 21 19 26 26 H 1.48500 * 109.47287 * 240.00074 * 23 21 19 27 27 H 1.09000 * 109.46893 * 300.00295 * 1 2 3 28 28 H 1.09002 * 109.46773 * 60.00018 * 1 2 3 29 29 H 1.08991 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47270 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47352 * 299.99627 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99555 * 3 2 1 33 33 H 1.09000 * 109.47104 * 299.99725 * 4 2 1 34 34 H 1.09002 * 109.47204 * 60.00512 * 4 2 1 35 35 H 1.08998 * 109.46543 * 179.97438 * 4 2 1 36 36 H 1.00902 * 111.00045 * 300.00671 * 7 5 2 37 37 H 1.00900 * 111.00263 * 63.95722 * 7 5 2 38 38 H 0.97005 * 119.99417 * 4.42553 * 10 8 5 39 39 H 1.08004 * 119.99342 * 0.02562 * 12 11 10 40 40 H 1.08004 * 119.89917 * 180.02562 * 13 12 11 41 41 H 1.07993 * 119.90066 * 180.27240 * 14 13 12 42 42 H 1.08002 * 120.00317 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.46952 * 300.00423 * 18 17 16 44 44 H 1.09003 * 109.46937 * 60.00035 * 18 17 16 45 45 H 0.96999 * 120.00376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 1.6766 -0.2073 2.1393 7 7 3.5090 -0.7217 1.2491 8 6 1.5376 -2.1420 1.2493 9 8 2.2661 -3.0428 0.8901 10 7 0.2789 -2.4118 1.6485 11 6 -0.1585 -3.7402 1.7373 12 6 0.2987 -4.6848 0.8311 13 6 -0.1337 -5.9948 0.9207 14 6 -1.0228 -6.3680 1.9122 15 6 -1.4849 -5.4333 2.8192 16 6 -1.0562 -4.1159 2.7369 17 16 -1.6429 -2.9218 3.8922 18 6 -2.7516 -3.8901 4.9524 19 6 -3.3441 -2.9949 6.0099 20 1 -3.0805 -1.9480 6.0409 21 6 -4.2229 -3.5123 6.9379 22 7 -4.5435 -4.7872 6.9005 23 14 -4.9579 -2.4025 8.2483 24 1 -4.4400 -1.0216 8.0750 25 1 -6.4373 -2.3967 8.1193 26 1 -4.5804 -2.9070 9.5930 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 3.8703 -1.1930 0.4333 37 1 3.8710 0.2179 1.3138 38 1 -0.3241 -1.6863 1.8744 39 1 0.9934 -4.3972 0.0557 40 1 0.2239 -6.7293 0.2142 41 1 -1.3538 -7.3937 1.9802 42 1 -2.1788 -5.7282 3.5925 43 1 -3.5520 -4.3165 4.3475 44 1 -2.1891 -4.6930 5.4289 45 1 -5.1620 -5.1511 7.5531 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573458163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -42.111698 kcal Electronic energy + Delta-G solvation = -25107.511793 eV Core-core repulsion = 21635.636882 eV Total energy + Delta-G solvation = -3471.874912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94837 -39.90296 -38.21817 -35.96276 -35.32853 -33.32341 -32.16742 -31.00637 -30.60186 -28.30878 -28.26765 -26.85135 -25.43717 -24.05333 -23.42972 -21.64415 -20.16386 -19.24763 -18.49751 -18.31469 -17.92560 -16.91833 -16.82558 -16.29479 -16.15081 -15.83051 -15.58765 -15.24685 -15.09232 -14.78573 -14.72829 -14.54979 -14.36938 -14.24631 -13.83457 -13.53725 -13.13330 -13.06405 -13.02706 -12.79262 -12.72356 -12.60771 -12.52298 -12.32883 -11.92435 -11.83577 -11.75292 -11.62253 -11.37846 -10.98162 -10.89008 -10.79028 -10.51954 -9.66710 -9.36286 -8.36516 -8.22018 -6.50920 0.18577 0.32523 0.76432 1.40206 1.41035 1.51016 1.54798 1.78027 1.99253 2.35007 2.74990 2.99019 3.48435 3.57942 3.63093 3.81622 3.87969 4.03541 4.14134 4.29660 4.36723 4.43157 4.48590 4.50336 4.68860 4.72011 4.81072 4.84410 4.84896 4.89807 4.94144 4.96712 5.03862 5.17221 5.23693 5.26840 5.31423 5.36354 5.44706 5.51780 5.54406 5.80872 5.97418 6.02359 6.35651 6.53424 6.56466 7.04507 7.18099 8.75832 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003507 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.652592 B = 7981.025318 C = 9459.725807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.145 4.145 5 C 0.090 3.910 6 H 0.111 0.889 7 N -0.834 5.834 8 C 0.524 3.476 9 O -0.543 6.543 10 N -0.660 5.660 11 C 0.145 3.855 12 C -0.114 4.114 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.134 4.134 16 C -0.119 4.119 17 S -0.152 6.152 18 C 0.081 3.919 19 C -0.540 4.540 20 H 0.068 0.932 21 C 0.018 3.982 22 N -0.922 5.922 23 Si 0.978 3.022 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.275 1.275 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.351 0.649 37 H 0.362 0.638 38 H 0.416 0.584 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.112 0.888 43 H 0.022 0.978 44 H 0.018 0.982 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.737 9.296 -16.696 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.092 4.092 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.025 4.025 6 H 0.129 0.871 7 N -0.369 5.369 8 C 0.313 3.687 9 O -0.419 6.419 10 N -0.307 5.307 11 C 0.045 3.955 12 C -0.136 4.136 13 C -0.130 4.130 14 C -0.133 4.133 15 C -0.159 4.159 16 C -0.234 4.234 17 S 0.093 5.907 18 C -0.067 4.067 19 C -0.579 4.579 20 H 0.087 0.913 21 C -0.184 4.184 22 N -0.561 5.561 23 Si 0.801 3.199 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.200 1.200 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.255 0.745 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.130 0.870 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.365 9.411 -15.994 22.300 hybrid contribution -1.402 -0.573 0.153 1.523 sum 10.963 8.837 -15.842 21.195 Atomic orbital electron populations 1.22136 0.93954 1.02004 1.03750 1.21216 0.96690 0.97186 0.94109 1.21874 1.01508 0.92834 1.03404 1.21916 1.01436 0.99522 0.97370 1.21450 0.90767 0.89990 1.00282 0.87099 1.58518 1.04072 1.24492 1.49829 1.21174 0.79963 0.92421 0.75154 1.90631 1.56145 1.48393 1.46769 1.43765 1.14155 1.06165 1.66638 1.17351 0.97477 0.85940 0.94767 1.21284 1.00650 0.93328 0.98295 1.21374 0.96940 0.95848 0.98871 1.21321 0.97523 0.99880 0.94615 1.21234 1.01488 0.92217 1.00948 1.21914 1.04003 0.98181 0.99347 1.84652 1.55572 1.18285 1.32156 1.21002 0.94061 0.96508 0.95096 1.20977 1.27649 0.95970 1.13291 0.91346 1.25906 0.96007 0.96788 0.99697 1.70061 1.34738 1.14100 1.37156 0.85204 0.78140 0.78783 0.77788 1.18538 1.19783 1.20009 0.91175 0.90585 0.93578 0.91536 0.90964 0.91474 0.94430 0.90811 0.91813 0.83341 0.82030 0.74462 0.84048 0.82403 0.83318 0.86955 0.95927 0.96329 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 7.44 71.99 0.54 -1.98 16 2 C -0.09 -1.30 0.62 -52.18 -0.03 -1.33 16 3 C -0.14 -1.35 8.14 71.98 0.59 -0.77 16 4 C -0.15 -2.22 7.88 71.98 0.57 -1.66 16 5 C 0.09 1.77 2.58 44.17 0.11 1.88 16 6 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 7 N -0.83 -15.22 8.81 -171.80 -1.51 -16.73 16 8 C 0.52 14.46 5.26 87.66 0.46 14.92 16 9 O -0.54 -17.82 13.38 -3.08 -0.04 -17.86 16 10 N -0.66 -19.41 3.85 -303.01 -1.17 -20.57 16 11 C 0.15 5.01 6.32 38.22 0.24 5.25 16 12 C -0.11 -3.57 8.70 22.37 0.19 -3.37 16 13 C -0.11 -3.02 10.04 22.29 0.22 -2.79 16 14 C -0.11 -3.44 10.04 22.28 0.22 -3.22 16 15 C -0.13 -5.13 9.36 22.39 0.21 -4.92 16 16 C -0.12 -4.68 6.12 22.71 0.14 -4.54 16 17 S -0.15 -6.53 20.72 -56.49 -1.17 -7.70 16 18 C 0.08 4.24 4.09 71.23 0.29 4.53 16 19 C -0.54 -29.97 9.13 25.60 0.23 -29.74 16 20 H 0.07 3.71 7.71 -2.91 -0.02 3.69 16 21 C 0.02 0.96 5.46 84.66 0.46 1.42 16 22 N -0.92 -53.28 13.29 21.45 0.28 -53.00 16 23 Si 0.98 42.52 29.54 68.60 2.03 44.55 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.90 5.88 -2.39 -0.01 0.89 16 30 H 0.07 0.52 6.76 -2.39 -0.02 0.50 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.04 0.76 7.00 -2.39 -0.02 0.74 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.88 6.67 -2.39 -0.02 0.86 16 36 H 0.35 6.48 6.75 -89.69 -0.61 5.88 16 37 H 0.36 4.51 7.39 -89.69 -0.66 3.85 16 38 H 0.42 11.29 6.57 -92.70 -0.61 10.68 16 39 H 0.14 4.30 6.20 -2.91 -0.02 4.28 16 40 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.11 4.74 5.88 -2.91 -0.02 4.73 16 43 H 0.02 1.25 7.75 -2.39 -0.02 1.23 16 44 H 0.02 1.04 7.75 -2.39 -0.02 1.02 16 45 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -66.49 367.67 2.02 -64.47 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.85 Total: 33.17 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 4.45 Total: -26.32 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -2.40 Total: -90.30 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.04 Total: -17.86 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -6.53 SS G_CDS: -1.17 Total: -7.70 kcal Total: -66.49 2.02 -64.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573458163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.354 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds