Wall clock time and date at job start Tue Mar 31 2020 13:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46921 * 2 1 4 4 C 1.52994 * 109.47195 * 240.00496 * 2 1 3 5 5 C 1.52996 * 109.47495 * 120.00090 * 2 1 3 6 6 H 1.08995 * 109.47738 * 180.02562 * 5 2 1 7 7 N 1.46905 * 109.46959 * 300.00257 * 5 2 1 8 8 C 1.50706 * 109.46791 * 59.99865 * 5 2 1 9 9 O 1.21294 * 119.99882 * 260.00054 * 8 5 2 10 10 N 1.34772 * 119.99760 * 80.00597 * 8 5 2 11 11 C 1.40141 * 119.99910 * 185.53784 * 10 8 5 12 12 C 1.38647 * 120.10055 * 24.81932 * 11 10 8 13 13 C 1.38247 * 120.01184 * 180.02562 * 12 11 10 14 14 C 1.38305 * 120.20845 * 359.94963 * 13 12 11 15 15 C 1.38200 * 120.19676 * 0.02562 * 14 13 12 16 16 C 1.38785 * 119.99191 * 0.02562 * 15 14 13 17 17 S 1.76200 * 120.10477 * 179.97438 * 16 15 14 18 18 C 1.81395 * 102.99937 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.47315 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99701 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00530 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99643 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00282 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47009 * 60.00206 * 23 21 19 25 25 H 1.48495 * 109.46967 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47043 * 300.00345 * 23 21 19 27 27 H 1.08997 * 109.47094 * 299.99910 * 1 2 3 28 28 H 1.09004 * 109.47349 * 60.00195 * 1 2 3 29 29 H 1.09005 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46971 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47085 * 300.00222 * 3 2 1 32 32 H 1.08997 * 109.47163 * 60.00132 * 3 2 1 33 33 H 1.09005 * 109.47102 * 299.99996 * 4 2 1 34 34 H 1.09004 * 109.47536 * 59.99424 * 4 2 1 35 35 H 1.09003 * 109.47425 * 179.97438 * 4 2 1 36 36 H 1.00905 * 111.00072 * 60.00143 * 7 5 2 37 37 H 1.00895 * 110.99823 * 183.95020 * 7 5 2 38 38 H 0.97006 * 119.99933 * 5.53791 * 10 8 5 39 39 H 1.08003 * 119.99457 * 359.97438 * 12 11 10 40 40 H 1.07997 * 119.90103 * 179.97438 * 13 12 11 41 41 H 1.07995 * 119.90251 * 180.02562 * 14 13 12 42 42 H 1.08004 * 120.00416 * 179.73769 * 15 14 13 43 43 H 1.09005 * 109.47253 * 299.99934 * 18 17 16 44 44 H 1.08998 * 109.47615 * 60.00398 * 18 17 16 45 45 H 0.97001 * 120.00038 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1300 -0.7209 1.2494 7 7 1.5504 -0.0288 2.4487 8 6 1.5377 -2.1421 1.2491 9 8 0.5769 -2.4456 1.9244 10 7 2.1561 -3.0754 0.4989 11 6 1.6217 -4.3677 0.4073 12 6 0.2679 -4.5770 0.6210 13 6 -0.2573 -5.8527 0.5307 14 6 0.5637 -6.9232 0.2263 15 6 1.9143 -6.7243 0.0111 16 6 2.4504 -5.4474 0.1007 17 16 4.1720 -5.1905 -0.1724 18 6 4.7829 -6.8615 -0.5257 19 6 6.2666 -6.8097 -0.7851 20 1 6.7897 -5.8658 -0.7413 21 6 6.9563 -7.9672 -1.0772 22 7 6.3193 -9.1166 -1.1300 23 14 8.7952 -7.9027 -1.3994 24 1 9.4890 -7.3643 -0.2019 25 1 9.2952 -9.2707 -1.6885 26 1 9.0630 -7.0218 -2.5645 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7207 -1.2495 36 1 0.5417 -0.0154 2.4720 37 1 1.9259 -0.4473 3.2864 38 1 2.9711 -2.8527 0.0223 39 1 -0.3764 -3.7435 0.8589 40 1 -1.3120 -6.0137 0.6979 41 1 0.1481 -7.9176 0.1566 42 1 2.5533 -7.5632 -0.2222 43 1 4.5863 -7.5086 0.3292 44 1 4.2737 -7.2563 -1.4048 45 1 6.8045 -9.9310 -1.3359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573458164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:22 Heat of formation + Delta-G solvation = -26.656246 kcal Electronic energy + Delta-G solvation = -25134.762819 eV Core-core repulsion = 21663.558106 eV Total energy + Delta-G solvation = -3471.204713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97574 -38.70399 -37.13859 -34.85525 -33.30806 -32.73409 -30.79723 -29.73018 -28.64913 -27.50093 -27.36481 -25.91493 -23.54738 -22.79836 -22.18823 -20.57286 -19.17369 -17.88584 -17.28435 -16.77462 -16.51756 -16.27677 -15.45525 -15.11098 -14.85741 -14.75191 -14.36980 -14.14792 -13.77649 -13.60277 -13.33966 -13.05068 -13.03353 -12.80110 -12.42638 -12.35556 -12.29680 -12.22693 -11.83608 -11.80468 -11.34043 -11.13547 -10.98218 -10.96617 -10.87258 -10.82299 -10.43054 -10.19530 -9.96785 -9.76405 -9.28289 -9.22338 -8.97174 -8.68507 -8.03902 -6.65120 -6.32158 -4.38472 1.43101 1.64109 2.32314 2.54101 3.07174 3.20202 3.24357 3.27246 3.54604 4.05014 4.15107 4.24636 4.40637 4.52493 4.68698 4.83257 5.05427 5.16514 5.19966 5.23122 5.29367 5.45054 5.49201 5.53648 5.61157 5.71924 5.72210 5.76915 5.78467 5.85160 5.98164 6.10134 6.16215 6.20749 6.40176 6.51089 6.65745 6.72898 6.81557 6.88709 6.91980 7.11708 7.23485 7.41751 7.59822 7.82866 8.02158 8.62105 9.25873 10.78925 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003456 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.064091 B = 8099.439130 C = 9475.640511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.130 4.130 4 C -0.162 4.162 5 C 0.084 3.916 6 H 0.105 0.895 7 N -0.816 5.816 8 C 0.484 3.516 9 O -0.530 6.530 10 N -0.655 5.655 11 C 0.147 3.853 12 C -0.117 4.117 13 C -0.123 4.123 14 C -0.118 4.118 15 C -0.114 4.114 16 C -0.096 4.096 17 S -0.171 6.171 18 C 0.079 3.921 19 C -0.521 4.521 20 H 0.068 0.932 21 C 0.069 3.931 22 N -0.889 5.889 23 Si 0.909 3.091 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.350 0.650 37 H 0.346 0.654 38 H 0.414 0.586 39 H 0.141 0.859 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.135 0.865 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 15.559 1.892 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 C -0.188 4.188 4 C -0.219 4.219 5 C -0.032 4.032 6 H 0.123 0.877 7 N -0.345 5.345 8 C 0.270 3.730 9 O -0.407 6.407 10 N -0.299 5.299 11 C 0.046 3.954 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.138 4.138 15 C -0.139 4.139 16 C -0.212 4.212 17 S 0.075 5.925 18 C -0.068 4.068 19 C -0.561 4.561 20 H 0.086 0.914 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.253 0.747 39 H 0.159 0.841 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.904 16.886 2.070 20.207 hybrid contribution 0.239 -2.372 -0.201 2.392 sum -10.665 14.514 1.868 18.108 Atomic orbital electron populations 1.21938 0.94145 1.02196 1.02177 1.20455 0.96178 0.96347 0.92378 1.21743 1.00937 0.93963 1.02113 1.22163 1.01712 1.01068 0.96995 1.21685 1.01261 0.86883 0.93360 0.87715 1.59167 1.15440 1.56374 1.03534 1.22223 0.83697 0.88780 0.78288 1.90647 1.27306 1.81544 1.41166 1.43854 1.28772 1.09265 1.48051 1.17286 0.91937 0.83168 1.03006 1.21168 0.92908 0.98338 1.01484 1.20945 0.99489 0.92363 1.01641 1.21035 0.93402 0.98879 1.00514 1.21237 0.95966 0.95678 1.01033 1.21829 0.98676 0.94964 1.05698 1.84999 0.97233 1.24146 1.86150 1.21360 0.99586 0.85633 1.00200 1.20564 0.90576 0.94631 1.50287 0.91396 1.24947 0.99289 0.94806 0.94528 1.69931 1.36741 0.98573 1.47351 0.86376 0.83627 0.77375 0.79102 1.19812 1.20930 1.19801 0.91955 0.92176 0.92616 0.92617 0.92871 0.91191 0.91829 0.91621 0.91814 0.83517 0.84130 0.74743 0.84116 0.86207 0.86115 0.84715 0.93732 0.93717 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.89 37.16 0.29 -1.04 16 2 C -0.05 -0.47 0.62 -154.51 -0.10 -0.56 16 3 C -0.13 -1.02 8.32 37.16 0.31 -0.72 16 4 C -0.16 -1.48 7.58 37.15 0.28 -1.20 16 5 C 0.08 0.84 2.51 -68.86 -0.17 0.67 16 6 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 7 N -0.82 -7.50 8.16 -5.65 -0.05 -7.55 16 8 C 0.48 6.32 5.21 -10.98 -0.06 6.27 16 9 O -0.53 -8.11 13.12 5.55 0.07 -8.04 16 10 N -0.65 -9.34 3.69 -9.71 -0.04 -9.38 16 11 C 0.15 2.48 6.44 -83.43 -0.54 1.94 16 12 C -0.12 -1.87 8.72 -39.43 -0.34 -2.22 16 13 C -0.12 -1.81 10.04 -39.55 -0.40 -2.20 16 14 C -0.12 -1.83 10.04 -39.57 -0.40 -2.23 16 15 C -0.11 -2.10 9.36 -39.39 -0.37 -2.47 16 16 C -0.10 -1.81 6.12 -38.90 -0.24 -2.05 16 17 S -0.17 -3.51 20.55 -107.50 -2.21 -5.72 16 18 C 0.08 1.94 4.09 36.01 0.15 2.09 16 19 C -0.52 -13.95 9.13 -34.44 -0.31 -14.27 16 20 H 0.07 1.79 7.71 -52.48 -0.40 1.39 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 23 Si 0.91 20.54 29.54 -169.99 -5.02 15.51 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.06 0.54 6.67 -51.93 -0.35 0.19 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.61 7.00 -51.93 -0.36 0.24 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 33 H 0.06 0.69 6.00 -51.93 -0.31 0.38 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.35 3.28 6.75 -39.29 -0.27 3.02 16 37 H 0.35 3.13 9.06 -39.29 -0.36 2.78 16 38 H 0.41 5.58 6.82 -40.82 -0.28 5.30 16 39 H 0.14 2.21 5.79 -52.48 -0.30 1.91 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.14 2.62 5.88 -52.48 -0.31 2.31 16 43 H 0.04 1.16 7.75 -51.92 -0.40 0.75 16 44 H 0.04 1.15 7.75 -51.93 -0.40 0.75 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -28.74 369.26 -9.58 -38.32 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.65 Total: 11.65 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.99 Total: -16.23 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.65 Total: -41.06 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.21 Total: -5.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.74 -9.58 -38.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573458164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.663 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds